Cicer_arietinum_v1_Contig1693

Contig Overview
NameCicer_arietinum_v1_Contig1693
Unique NameCicer_arietinum_v1_Contig1693
Typecontig
OrganismCicer arietinum (chickpea)
Sequence length516
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
GR916655ESTGR916655:15..480 +
GR407311ESTGR407311:1..514 +
GR405819ESTGR405819:20..513 +
GR405818ESTGR405818:159..513 -
HO066917ESTHO066917:306..516 +
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
GR916655GR916655Cicer arietinumEST
GR407311GR407311Cicer arietinumEST
GR405819GR405819Cicer arietinumEST
GR405818GR405818Cicer arietinumEST
HO066917HO066917Cicer arietinumEST


Homology
[Close]
BLAST of Cicer_arietinum_v1_Contig1693 vs. TrEMBL
Match: D7UCV2_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_46.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00027169001 PE=4 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.357e-19
Identity = 47/63 (74.60%), Postives = 56/63 (88.89%), Query Frame = 3 
Query:   69 MAIMERLRMLVAQEPVLAASCLIAGFGLFLPAFVRPMLDSYQTTKQPPQPALSDVVAGMTGKK 257
            M ++E+L+ML+ QEPV+AASC IAG GLFLPA VRP+LDS +T+KQ PQPALSDVVAGMTGKK
Sbjct:    1 MPVVEKLKMLIVQEPVVAASCFIAGVGLFLPAVVRPILDSLETSKQVPQPALSDVVAGMTGKK 63
[Close]
BLAST of Cicer_arietinum_v1_Contig1693 vs. TrEMBL
Match: Q8GT82_GOSBA (Fiber protein Fb11 OS=Gossypium barbadense PE=4 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.023e-19
Identity = 46/63 (73.02%), Postives = 57/63 (90.48%), Query Frame = 3 
Query:   69 MAIMERLRMLVAQEPVLAASCLIAGFGLFLPAFVRPMLDSYQTTKQPPQPALSDVVAGMTGKK 257
            MA+M++L++ V QEPV+AASCLIAGFGLFLPA VRP+LDS +++KQ PQPAL DVVAG+TGKK
Sbjct:    1 MAVMQKLKIFVVQEPVVAASCLIAGFGLFLPAVVRPILDSLESSKQVPQPALRDVVAGVTGKK 63
[Close]
BLAST of Cicer_arietinum_v1_Contig1693 vs. TrEMBL
Match: B4FKL9_MAIZE (Fiber protein Fb11 OS=Zea mays PE=4 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.149e-18
Identity = 45/63 (71.43%), Postives = 56/63 (88.89%), Query Frame = 3 
Query:   69 MAIMERLRMLVAQEPVLAASCLIAGFGLFLPAFVRPMLDSYQTTKQPPQPALSDVVAGMTGKK 257
            MA+ME+L++ V +EPV+AASCLIAGFGLFLPA VRP+LDS+QT +Q P P L+DVVAG+TGKK
Sbjct:    1 MAVMEKLKIFVVKEPVVAASCLIAGFGLFLPAVVRPILDSWQTAEQVPPPLLNDVVAGVTGKK 63
[Close]
BLAST of Cicer_arietinum_v1_Contig1693 vs. TrEMBL
Match: Q5TKP1_ORYSJ (Os05g0542100 protein OS=Oryza sativa subsp. japonica GN=OJ1362_G11.16 PE=4 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.959e-18
Identity = 44/63 (69.84%), Postives = 54/63 (85.71%), Query Frame = 3 
Query:   69 MAIMERLRMLVAQEPVLAASCLIAGFGLFLPAFVRPMLDSYQTTKQPPQPALSDVVAGMTGKK 257
            M +ME+L++   +EPV+ ASCLIAGFGLFLPA VRPMLDS++T KQ P PAL+DVVAG+TGKK
Sbjct:    1 MGVMEKLKIFAVKEPVVTASCLIAGFGLFLPAVVRPMLDSWETAKQVPPPALNDVVAGVTGKK 63
[Close]
BLAST of Cicer_arietinum_v1_Contig1693 vs. TrEMBL
Match: B8AW76_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_20832 PE=4 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.959e-18
Identity = 44/63 (69.84%), Postives = 54/63 (85.71%), Query Frame = 3 
Query:   69 MAIMERLRMLVAQEPVLAASCLIAGFGLFLPAFVRPMLDSYQTTKQPPQPALSDVVAGMTGKK 257
            M +ME+L++   +EPV+ ASCLIAGFGLFLPA VRPMLDS++T KQ P PAL+DVVAG+TGKK
Sbjct:    1 MGVMEKLKIFAVKEPVVTASCLIAGFGLFLPAVVRPMLDSWETAKQVPPPALNDVVAGVTGKK 63
[Close]
BLAST of Cicer_arietinum_v1_Contig1693 vs. TrEMBL
Match: C5YUV8_SORBI (Putative uncharacterized protein Sb09g027070 OS=Sorghum bicolor GN=Sb09g027070 PE=4 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.445e-18
Identity = 43/63 (68.25%), Postives = 56/63 (88.89%), Query Frame = 3 
Query:   69 MAIMERLRMLVAQEPVLAASCLIAGFGLFLPAFVRPMLDSYQTTKQPPQPALSDVVAGMTGKK 257
            MA+ME+L++ V +EPV+AASCLIAGFGLFLPA VRP+LDS++T ++ P P L+DVVAG+TGKK
Sbjct:    1 MAVMEKLKIFVVKEPVVAASCLIAGFGLFLPAVVRPILDSWETAEKVPPPPLNDVVAGVTGKK 63
[Close]
BLAST of Cicer_arietinum_v1_Contig1693 vs. TrEMBL
Match: B6SNA3_MAIZE (Fiber protein Fb11 OS=Zea mays PE=4 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.445e-18
Identity = 43/63 (68.25%), Postives = 56/63 (88.89%), Query Frame = 3 
Query:   69 MAIMERLRMLVAQEPVLAASCLIAGFGLFLPAFVRPMLDSYQTTKQPPQPALSDVVAGMTGKK 257
            MA+ME+L++ V +EPV+AASCLIAGFGLFLPA VRP+LDS++T ++ P P L+DVVAG+TGKK
Sbjct:    1 MAVMEKLKIFVVKEPVVAASCLIAGFGLFLPAVVRPILDSWETAEKVPPPPLNDVVAGVTGKK 63
[Close]
BLAST of Cicer_arietinum_v1_Contig1693 vs. TrEMBL
Match: D7LEK7_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_483814 PE=4 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.302e-17
Identity = 44/63 (69.84%), Postives = 52/63 (82.54%), Query Frame = 3 
Query:   69 MAIMERLRMLVAQEPVLAASCLIAGFGLFLPAFVRPMLDSYQTTKQPPQPALSDVVAGMTGKK 257
            M IME+LRM VAQEPV+AASCLI G GLFLPA VRP+LDS + +KQ   P L+DV+AG+TGKK
Sbjct:    1 MPIMEKLRMFVAQEPVVAASCLIGGVGLFLPAVVRPILDSLEASKQVKAPPLTDVIAGVTGKK 63
[Close]
BLAST of Cicer_arietinum_v1_Contig1693 vs. TrEMBL
Match: A9PAD2_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_644598 PE=4 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.302e-17
Identity = 45/65 (69.23%), Postives = 55/65 (84.62%), Query Frame = 3 
Query:   69 MAIMERLRMLVAQEPVLAASCLIAGFGLFLPAFVRPMLDSYQTTKQPP--QPALSDVVAGMTGKK 257
            M +ME+LRM VAQEPV+AASCLIAG GLFLPA VRP+LDS + +K  P  QP++SDV+AGMTGK+
Sbjct:    1 MPVMEKLRMFVAQEPVVAASCLIAGIGLFLPAVVRPILDSLEGSKHVPEKQPSISDVLAGMTGKR 65
[Close]
BLAST of Cicer_arietinum_v1_Contig1693 vs. TrEMBL
Match: Q9ZPY5_ARATH (At2g46540/F11C10.23 OS=Arabidopsis thaliana GN=At2g46540 PE=4 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 8.231e-17
Identity = 43/63 (68.25%), Postives = 52/63 (82.54%), Query Frame = 3 
Query:   69 MAIMERLRMLVAQEPVLAASCLIAGFGLFLPAFVRPMLDSYQTTKQPPQPALSDVVAGMTGKK 257
            M +ME+LRM VAQEPV+AASCLI G GLFLPA VRP+LDS + +KQ   P L+DV+AG+TGKK
Sbjct:    1 MPVMEKLRMFVAQEPVVAASCLIGGVGLFLPAVVRPILDSLEASKQVKAPPLTDVIAGVTGKK 63
[Close]
BLAST of Cicer_arietinum_v1_Contig1693 vs. TAIR peptide
Match: AT2G46540.1 (| Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; Has 42 Blast hits to 42 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:19110687-19111681 REVERSE LENGTH=65)

HSP 1 Score: 90.1225 bits (222), Expect = 7.197e-19
Identity = 43/63 (68.25%), Postives = 52/63 (82.54%), Query Frame = 3 
Query:   69 MAIMERLRMLVAQEPVLAASCLIAGFGLFLPAFVRPMLDSYQTTKQPPQPALSDVVAGMTGKK 257
            M +ME+LRM VAQEPV+AASCLI G GLFLPA VRP+LDS + +KQ   P L+DV+AG+TGKK
Sbjct:    1 MPVMEKLRMFVAQEPVVAASCLIGGVGLFLPAVVRPILDSLEASKQVKAPPLTDVIAGVTGKK 63
The following BLAST results are available for this feature:
BLAST of Cicer_arietinum_v1_Contig1693 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
D7UCV2_VITVI1.357e-1974.60Whole genome shotgun sequence of line PN40024, sca... [more]
Q8GT82_GOSBA3.023e-1973.02Fiber protein Fb11 OS=Gossypium barbadense PE=4 SV... [more]
B4FKL9_MAIZE1.149e-1871.43Fiber protein Fb11 OS=Zea mays PE=4 SV=1[more]
Q5TKP1_ORYSJ1.959e-1869.84Os05g0542100 protein OS=Oryza sativa subsp. japoni... [more]
B8AW76_ORYSI1.959e-1869.84Putative uncharacterized protein OS=Oryza sativa s... [more]
C5YUV8_SORBI7.445e-1868.25Putative uncharacterized protein Sb09g027070 OS=So... [more]
B6SNA3_MAIZE7.445e-1868.25Fiber protein Fb11 OS=Zea mays PE=4 SV=1[more]
D7LEK7_ARALY6.302e-1769.84Putative uncharacterized protein OS=Arabidopsis ly... [more]
A9PAD2_POPTR6.302e-1769.23Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
Q9ZPY5_ARATH8.231e-1768.25At2g46540/F11C10.23 OS=Arabidopsis thaliana GN=At2... [more]
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BLAST of Cicer_arietinum_v1_Contig1693 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT2G46540.17.197e-1968.25| Symbols: | unknown protein; FUNCTIONS IN: molec... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 7..14
score

Sequences
The following sequences are available for this feature:

contig sequence

>Cicer_arietinum_v1_Contig1693 ID=Cicer_arietinum_v1_Contig1693; Name=Cicer_arietinum_v1_Contig1693; organism=Cicer arietinum; type=contig; length=516bp
AGGAGAAGAGAGTGGAAGATACGTAATTGAAGTGAAGGAGTTGGAAGGAA
TTGAGAATCAAAATCGAAATGGCTATTATGGAGAGGTTGAGAATGCTCGT
TGCTCAAGAACCAGTTCTCGCTGCTTCCTGTCTCATCGCTGGCTTTGGTC
TTTTTCTTCCTGCGTTTGTGAGACCTATGCTGGATTCATATCAGACAACC
AAACAACCTCCTCAACCTGCTTTGAGCGACGTGGTTGCAGGTATGACTGG
TAAAAAGTAAGCTGATTTACTTGAGATACAAGGGGAAAATTGTCAACTTC
TCTGCTTGAACTTTTTTTCATTGTGAGTAATAAAATTGCCCAGTTACAAA
ACATTTGATTGAGCATCCATTTGTGACAACCTATCAGTTCCAGATTCGTC
TAGTGGCTTCATTTCATATTTAGGTTAAGTGTTGGGATGAATGTCTGCTT
ATTGTGCTGCCTGATTGATTTTGCCTCTACTAAGTAATGCACTTTCTGAA
TTGTTCCTCTGGTGAC
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