Cicer_arietinum_v1_Contig1855

Contig Overview
NameCicer_arietinum_v1_Contig1855
Unique NameCicer_arietinum_v1_Contig1855
Typecontig
OrganismCicer arietinum (chickpea)
Sequence length486
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
GR913017ESTGR913017:13..227 -
FD449552ESTFD449552:13..240 +
HO065663ESTHO065663:29..257 +
GR913012ESTGR913012:13..274 +
GR915359ESTGR915359:1..274 -
ES560292ESTES560292:13..253 +
GR912594ESTGR912594:1..277 +
GR403950ESTGR403950:1..343 +
GR408793ESTGR408793:1..396 +
GR404686ESTGR404686:1..458 -
GR407199ESTGR407199:301..458 -
GR400113ESTGR400113:291..486 -
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
GR913017GR913017Cicer arietinumEST
FD449552FD449552Cicer arietinumEST
HO065663HO065663Cicer arietinumEST
GR913012GR913012Cicer arietinumEST
GR915359GR915359Cicer arietinumEST
ES560292ES560292Cicer arietinumEST
GR912594GR912594Cicer arietinumEST
GR403950GR403950Cicer arietinumEST
GR408793GR408793Cicer arietinumEST
GR404686GR404686Cicer arietinumEST
GR407199GR407199Cicer arietinumEST
GR400113GR400113Cicer arietinumEST


Homology
[Close]
BLAST of Cicer_arietinum_v1_Contig1855 vs. TrEMBL
Match: B9RKG3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1049300 PE=4 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 9.451e-7
Identity = 31/75 (41.33%), Postives = 38/75 (50.67%), Query Frame = 3 
Query:   21 MKDTGKSHKAN-GKSSPETRKDRXXXXXXXXXXXXXXXXXXFTWIGRGYEDLQIGPDYGALDSKDPNFEDREEIA 242
            MK+TGKS K++   S  + R+DR                  FTW G GY   +IG     LD+KDPNFED EE A
Sbjct:    1 MKNTGKSSKSSTANSKSDARRDRKSATGMSGSPKKGGHGGKFTWAGDGYSPAEIGYQKDVLDAKDPNFEDPEETA 75
The following BLAST results are available for this feature:
BLAST of Cicer_arietinum_v1_Contig1855 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 1
Match NameE-valueIdentityDescription
B9RKG3_RICCO9.451e-741.33Putative uncharacterized protein OS=Ricinus commun... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 14..27
score
NoneNo IPR availableSEGsegsegcoord: 29..46
score

Sequences
The following sequences are available for this feature:

contig sequence

>Cicer_arietinum_v1_Contig1855 ID=Cicer_arietinum_v1_Contig1855; Name=Cicer_arietinum_v1_Contig1855; organism=Cicer arietinum; type=contig; length=486bp
GACTCGTCATCACTCACACTATGAAAGACACCGGAAAGAGCCATAAGGCG
AACGGAAAATCTTCGCCGGAGACAAGGAAGGATCGGAAATCAGCGACAGG
AACGAGCGGATCGCCGAAGAAAGGAGGACACGGAGGTAAGTTTACGTGGA
TCGGACGTGGCTACGAGGATCTTCAAATTGGACCTGATTACGGAGCATTG
GATTCCAAGGATCCGAACTTCGAAGATCGTGAAGAAATCGCCGCCGTCTG
AGTACGGTGGCTCCGGTACCAGATCTGCAATTATTAGTACTAATCTGAGA
GACGCTAGTTGATCCGTGTAATTTGAAGTTCAATAAAACGAATCGTTTGT
GTATAAAATCTCGATTTGTTTTGCTTTGTAGTAACGATTCTGTGTATGTA
AATTCTCCATTTTGTGCTTCTCTCTTGTATATGAGAATTACTGGTAATAA
TTTTAGTCAAAAGCTACTAACAAGTGTTTAAAGACC
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