GR393145

EST Overview
NameGR393145
Unique NameGR393145
TypeEST
OrganismCicer arietinum (chickpea)
Sequence length544
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Homology
BLAST of GR393145 vs. TrEMBL
Match: C6THQ8_SOYBN (Putative uncharacterized protein (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.005e-18
Identity = 53/89 (59.55%), Postives = 61/89 (68.54%), Query Frame = -2
Query:  196 MKHGADNGTIISEQKVKFFFHQFIALYLEHSGFSKTLKKFIFEGKIEKDNTEGLSVDLEEMCRKFLETC-NDGKSTINGQKEQVAGVHS 459
            MKH  DNG   SE KV    HQ IA YL+HSGFSKTLKKF  E + EK++ +G  VDLEEMC K+ E C  D KS +N Q EQVAGV+S
Sbjct:    1 MKH-TDNGAFNSEHKV--LLHQSIARYLKHSGFSKTLKKFRSEAQFEKNDLKGSPVDLEEMCLKYFEICGKDAKSNLNDQNEQVAGVNS 86          
BLAST of GR393145 vs. TrEMBL
Match: D7SQG0_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_52.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00029286001 PE=4 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.742e-11
Identity = 41/99 (41.41%), Postives = 57/99 (57.58%), Query Frame = -2
Query:  214 TLFSFTPRQVFLNTPTMKHGADNGT-IISEQKVKFFFHQFIALYLEHSGFSKTLKKFIFEGKIEKDNTEGLSVDLEEMCRKFLETCNDGKSTINGQKEQ 507
            +L +F PR V L+   M + ++  +  ++  + K   H  I  YL+ SGFSKTLK F  E  +E DN  G S+DLEE+  K LETC+D  +  N  KEQ
Sbjct:    9 SLTAFKPRSVMLSNQAMNNLSNKTSKTLNPCQKKTLLHSSILHYLQRSGFSKTLKYFQREAPLENDNGNGCSLDLEEVYYKSLETCDDASTNWNNCKEQ 107          
BLAST of GR393145 vs. TrEMBL
Match: A5C3Y6_VITVI (Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_015753 PE=4 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.802e-10
Identity = 40/99 (40.40%), Postives = 57/99 (57.58%), Query Frame = -2
Query:  214 TLFSFTPRQVFLNTPTMKHGADNGT-IISEQKVKFFFHQFIALYLEHSGFSKTLKKFIFEGKIEKDNTEGLSVDLEEMCRKFLETCNDGKSTINGQKEQ 507
            +L +F PR V L+   M + ++  +  ++  + K   H  I  YL+ SGFSKTLK F  E  +E DN  G S+DLEE+  K LETC++  +  N  KEQ
Sbjct:  438 SLTAFKPRSVMLSNQAMNNLSNKTSKTLNPCQKKTLLHSSILHYLQRSGFSKTLKYFQREAPLENDNGNGCSLDLEEVYYKSLETCDNASTNWNNCKEQ 536          
BLAST of GR393145 vs. TrEMBL
Match: B9RWZ8_RICCO (Cylicin-2, putative OS=Ricinus communis GN=RCOM_1708080 PE=4 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 9.254e-7
Identity = 38/105 (36.19%), Postives = 53/105 (50.48%), Query Frame = -2
Query:  214 TLFSFTPRQVFL--NTPTMKHGADNGT-----IISEQKVKFFFHQFIALYLEHSGFSKTLKKFIFEGKIEKDNTEGLSVDLEEMCRKFLETCNDGKSTINGQKEQ 507
            ++ +F PRQV L    P      D+G+     +I + + K      IA YLE SGFSKT+KKF  E +I+KD+    S DL+EM  K L+  N         + Q
Sbjct:   15 SILAFKPRQVLLLSKPPASSMKLDDGSNNNDKLILKPEQKTLLLNSIAQYLERSGFSKTVKKFRSEARIQKDDLIESSFDLQEMFIKILDMRNHANKNSKSHRVQ 119          
BLAST of GR393145 vs. TAIR peptide
Match: AT5G57120.1 (| Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif (InterPro:IPR006594), SRP40, C-terminal (InterPro:IPR007718); Has 101969 Blast hits to 55488 proteins in 2506 species: Archae - 424; Bacteria - 13843; Metazoa - 37674; Fungi - 9726; Plants - 4941; Viruses - 569; Other Eukaryotes - 34792 (source: NCBI BLink). | chr5:23122767-23124400 REVERSE LENGTH=330)

HSP 1 Score: 51.9878 bits (123), Expect = 2.415e-7
Identity = 46/156 (29.49%), Postives = 70/156 (44.87%), Query Frame = -2
Query:    1 GADNGTIISEQKVKFFFHQFIALYLEHSGFSKTLKKFIFEGKIEKDNTEGLSVDLEEMCRKFLETCNDGKSTINGQKEQVAGVHSXXXXXXXXXXXXXXXKLVFEAADNM------EDNQLESLPMVPENKVKDDLFTDAKVENGAETEKQSKRKT 450
            G ++ T   E + K    + +A YLE  GFSK  KK + E +IEK        DLEE+  +FL    D ++  NG  E                        V EA +N+      + N+   + +  E KVK+   TDA +E+G + EK+ K++T
Sbjct:    2 GNESKTSALESEQKALLLRSVAQYLERCGFSKCFKKLLSEAEIEKKELNTSLPDLEEIFSEFLNK-RDHEAAANGNTE----------------------ANVVEAVENVKKDKKKKKNKETKVEVTEEEKVKE---TDAVIEDGVK-EKKKKKET 130          
The following BLAST results are available for this feature:
BLAST of GR393145 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 4
Match NameE-valueIdentityDescription
C6THQ8_SOYBN4.005e-1859.55Putative uncharacterized protein (Fragment) OS=Gly... [more]
D7SQG0_VITVI4.742e-1141.41Whole genome shotgun sequence of line PN40024, sca... [more]
A5C3Y6_VITVI1.802e-1040.40Putative uncharacterized protein (Fragment) OS=Vit... [more]
B9RWZ8_RICCO9.254e-736.19Cylicin-2, putative OS=Ricinus communis GN=RCOM_17... [more]
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BLAST of GR393145 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT5G57120.12.415e-729.49| Symbols: | FUNCTIONS IN: molecular_function unk... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 50..65
score: NAcoord: 105..116
score
NoneNo IPR availableSEGsegsegcoord: 117..132
score
NoneNo IPR availableSEGsegsegcoord: 11..29
score
IPR006594LisH dimerisation motifPROFILEPS50896LISHcoord: 44..76
score: 7

Properties
Property NameValue
Singlet in analysisCicer arietinum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GR393145 ID=GR393145; Name=GR393145; organism=Cicer arietinum; type=EST; length=544bp
CGTTTTACGTTTGGACTGCTTCTCTGTTTCAGCACCATTTTCAACTTTGG
CATCAGTAAATAAATCATCCTTAACTTTATTTTCTGGAACCATAGGCAGT
GACTCCAATTGGTTATCTTCCATGTTATCAGCAGCTTCAAAAACTAATTT
GCTTTTCTTTTTCTTTTTTTCCTTGGGTTTTTCCTCTTCATTTTTGGAGT
GCACGCCTGCAACTTGCTCCTTTTGGCCATTGATAGTTGACTTACCATCG
TTACATGTTTCAAGAAATTTGCGGCACATTTCTTCTAAATCAACTGACAA
ACCCTCTGTATTATCTTTCTCAATTTTCCCTTCAAATATAAACTTTTTTA
GGGTTTTGGAAAAGCCGGAGTGTTCCAAGTAAAGAGCAATAAATTGATGA
AAAAAAAACTTCACTTTCTGTTCCGAAATTATGGTTCCGTTGTCGGCACC
GTGCTTCATGGTTGGAGTGTTTAAAAAAACTTGACGAGGAGTGAAAGAAA
AAAGGGTTGAAATTCCTTTGATACCTGATGGATTTGCAGGCATG
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: INTERPRO
TermDefinition
IPR006594LisH