GR420884

EST Overview
NameGR420884
Unique NameGR420884
TypeEST
OrganismCicer arietinum (chickpea)
Sequence length577
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Homology
BLAST of GR420884 vs. TrEMBL
Match: C6ZJY6_SOYBN (Serine hydroxymethyltransferase OS=Glycine max PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 1.775e-9
Identity = 38/55 (69.09%), Postives = 41/55 (74.55%), Query Frame = -3
Query:  396 TLDIQLLKRNMEKDFNKGLVNNKAIDVEDLKAD--SASLKFDMPGFLVSELKYKD 554
            TL+IQ     + KDFNKGLVNNKAI  EDLKAD    S  FDMPGFLVSE+KYKD
Sbjct:  427 TLEIQKEHGKLLKDFNKGLVNNKAI--EDLKADVEKFSATFDMPGFLVSEMKYKD 479          
BLAST of GR420884 vs. TrEMBL
Match: C6ZJY7_SOYBN (Serine hydroxymethyltransferase OS=Glycine max PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 2.318e-9
Identity = 38/55 (69.09%), Postives = 41/55 (74.55%), Query Frame = -3
Query:  396 TLDIQLLKRNMEKDFNKGLVNNKAIDVEDLKAD--SASLKFDMPGFLVSELKYKD 554
            TL+IQ     + KDFNKGLVNNKAI  EDLKAD    S  FDMPGFLVSE+KYKD
Sbjct:  444 TLEIQKEHGKLLKDFNKGLVNNKAI--EDLKADVEKFSALFDMPGFLVSEMKYKD 496          
BLAST of GR420884 vs. TrEMBL
Match: B9S9Y7_RICCO (Serine hydroxymethyltransferase OS=Ricinus communis GN=RCOM_0523510 PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 3.348e-8
Identity = 36/57 (63.16%), Postives = 40/57 (70.18%), Query Frame = -3
Query:  396 SPTLDIQLLKRNMEKDFNKGLVNNKAIDVEDLKAD--SASLKFDMPGFLVSELKYKD 560
            S TL IQ     + KDFNKGLVNNK  D+E LKAD    S  FDMPGFL+SE+KYKD
Sbjct:  417 SLTLSIQKEHGKLLKDFNKGLVNNK--DIEALKADVEKFSSSFDMPGFLMSEMKYKD 471          
BLAST of GR420884 vs. TrEMBL
Match: Q9FPJ3_ARATH (Serine hydroxymethyltransferase OS=Arabidopsis thaliana GN=AT4g13930/dl3005c PE=2 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 7.458e-8
Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = -3
Query:  396 TLDIQLLKRNMEKDFNKGLVNNKAIDVEDLKAD--SASLKFDMPGFLVSELKYKD 554
            TLDIQ     + KDFNKGLVNNK  D++ LKAD    S  ++MPGFL+SE+KYKD
Sbjct:  419 TLDIQKTYGKLLKDFNKGLVNNK--DLDQLKADVEKFSASYEMPGFLMSEMKYKD 471          
BLAST of GR420884 vs. TrEMBL
Match: O23254_ARATH (Serine hydroxymethyltransferase OS=Arabidopsis thaliana GN=dl3005c PE=1 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 7.458e-8
Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = -3
Query:  396 TLDIQLLKRNMEKDFNKGLVNNKAIDVEDLKAD--SASLKFDMPGFLVSELKYKD 554
            TLDIQ     + KDFNKGLVNNK  D++ LKAD    S  ++MPGFL+SE+KYKD
Sbjct:  419 TLDIQKTYGKLLKDFNKGLVNNK--DLDQLKADVEKFSASYEMPGFLMSEMKYKD 471          
BLAST of GR420884 vs. TrEMBL
Match: D7MHA0_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_915517 PE=4 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 7.458e-8
Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = -3
Query:  396 TLDIQLLKRNMEKDFNKGLVNNKAIDVEDLKAD--SASLKFDMPGFLVSELKYKD 554
            TLDIQ     + KDFNKGLVNNK  D++ LKAD    S  ++MPGFL+SE+KYKD
Sbjct:  419 TLDIQKTYGKLLKDFNKGLVNNK--DLDQLKADVEKFSASYEMPGFLMSEMKYKD 471          
BLAST of GR420884 vs. TrEMBL
Match: A9PL04_POPTM (Serine hydroxymethyltransferase OS=Populus tremuloides GN=SHMT1 PE=2 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 9.741e-8
Identity = 35/55 (63.64%), Postives = 39/55 (70.91%), Query Frame = -3
Query:  396 TLDIQLLKRNMEKDFNKGLVNNKAIDVEDLKAD--SASLKFDMPGFLVSELKYKD 554
            TL IQ     + KDFNKGLVNNK  D+E LKAD    S  FDMPGFL+SE+KYKD
Sbjct:  419 TLSIQKEYGKLLKDFNKGLVNNK--DIEALKADVEKFSGSFDMPGFLMSEMKYKD 471          
BLAST of GR420884 vs. TrEMBL
Match: Q8LBY1_ARATH (Serine hydroxymethyltransferase OS=Arabidopsis thaliana PE=2 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 2.170e-7
Identity = 32/55 (58.18%), Postives = 40/55 (72.73%), Query Frame = -3
Query:  396 TLDIQLLKRNMEKDFNKGLVNNKAIDVEDLKAD--SASLKFDMPGFLVSELKYKD 554
            TLDIQ     + KDFNKGLVNNK  D++ LKAD    S  ++MPGFL+SE+KY+D
Sbjct:  419 TLDIQKTYGKLLKDFNKGLVNNK--DLDQLKADVEKFSASYEMPGFLMSEMKYQD 471          
BLAST of GR420884 vs. TrEMBL
Match: D7SNS3_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_29.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00021046001 PE=4 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 2.834e-7
Identity = 33/55 (60.00%), Postives = 38/55 (69.09%), Query Frame = -3
Query:  396 TLDIQLLKRNMEKDFNKGLVNNKAIDVEDLKAD--SASLKFDMPGFLVSELKYKD 554
            TL IQ     + KDFNKGLVNNK  D+E+LK D    S  F+MPGF VSE+KYKD
Sbjct:  204 TLKIQKEHGKLLKDFNKGLVNNK--DIEELKVDVEKFSASFEMPGFSVSEMKYKD 256          
BLAST of GR420884 vs. TrEMBL
Match: A9P855_POPTR (Serine hydroxymethyltransferase OS=Populus trichocarpa GN=SHMT1 PE=2 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 4.834e-7
Identity = 34/55 (61.82%), Postives = 38/55 (69.09%), Query Frame = -3
Query:  396 TLDIQLLKRNMEKDFNKGLVNNKAIDVEDLKAD--SASLKFDMPGFLVSELKYKD 554
            TL IQ     + KDFNKGLVNNK  D+E LKAD    S  FDMPGF +SE+KYKD
Sbjct:  419 TLSIQKEYGKLLKDFNKGLVNNK--DIEALKADVEKFSGSFDMPGFQMSEMKYKD 471          
BLAST of GR420884 vs. TAIR peptide
Match: AT4G13930.1 (| Symbols: SHM4 | serine hydroxymethyltransferase 4 | chr4:8048013-8050021 REVERSE LENGTH=471)

HSP 1 Score: 60.8474 bits (146), Expect = 5.719e-10
Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = -3
Query:  396 TLDIQLLKRNMEKDFNKGLVNNKAIDVEDLKAD--SASLKFDMPGFLVSELKYKD 554
            TLDIQ     + KDFNKGLVNNK  D++ LKAD    S  ++MPGFL+SE+KYKD
Sbjct:  419 TLDIQKTYGKLLKDFNKGLVNNK--DLDQLKADVEKFSASYEMPGFLMSEMKYKD 471          
BLAST of GR420884 vs. TAIR peptide
Match: AT4G13890.1 (| Symbols: SHM5, EDA36, EDA37 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr4:8032146-8033718 REVERSE LENGTH=470)

HSP 1 Score: 51.2174 bits (121), Expect = 4.531e-7
Identity = 26/48 (54.17%), Postives = 30/48 (62.50%), Query Frame = -3
Query:  411 TLDIQLLKRNMEKDFNKGLVNNKAIDVEDLKADSASLKFDMPGFLVSE 554
            TLDIQ     + KDFNKGLVNNK ID      +  +  FDMPGF +SE
Sbjct:  419 TLDIQEQYGKVMKDFNKGLVNNKEIDEIKADVEEFTYDFDMPGFFISE 466          
The following BLAST results are available for this feature:
BLAST of GR420884 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
C6ZJY6_SOYBN1.775e-969.09Serine hydroxymethyltransferase OS=Glycine max PE=... [more]
C6ZJY7_SOYBN2.318e-969.09Serine hydroxymethyltransferase OS=Glycine max PE=... [more]
B9S9Y7_RICCO3.348e-863.16Serine hydroxymethyltransferase OS=Ricinus communi... [more]
Q9FPJ3_ARATH7.458e-860.00Serine hydroxymethyltransferase OS=Arabidopsis tha... [more]
O23254_ARATH7.458e-860.00Serine hydroxymethyltransferase OS=Arabidopsis tha... [more]
D7MHA0_ARALY7.458e-860.00Putative uncharacterized protein OS=Arabidopsis ly... [more]
A9PL04_POPTM9.741e-863.64Serine hydroxymethyltransferase OS=Populus tremulo... [more]
Q8LBY1_ARATH2.170e-758.18Serine hydroxymethyltransferase OS=Arabidopsis tha... [more]
D7SNS3_VITVI2.834e-760.00Whole genome shotgun sequence of line PN40024, sca... [more]
A9P855_POPTR4.834e-761.82Serine hydroxymethyltransferase OS=Populus trichoc... [more]
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BLAST of GR420884 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT4G13930.15.719e-1060.00| Symbols: SHM4 | serine hydroxymethyltransferase ... [more]
AT4G13890.14.531e-754.17| Symbols: SHM5, EDA36, EDA37 | Pyridoxal phosphat... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001085Serine hydroxymethyltransferasePANTHERPTHR11680SERINE HYDROXYMETHYLTRANSFERASEcoord: 8..59
score: 4.6

Properties
Property NameValue
Singlet in analysisCicer arietinum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GR420884 ID=GR420884; Name=GR420884; organism=Cicer arietinum; type=EST; length=577bp
AACTTTTAAAGATATTTTATAATTAACCATTTTTAAATGTATATCCAAAA
ACATTTTATGAATGTAAGGAGAGGGAAAACAAAATGAAGCTCCTAGAACA
TCATAAATTGAATTAATTAATAGATTATTAGTCCAATTTAGGCCCAAGTT
CACAAGATAAACGGATAAAACCGTCCAGAATAACTTTCTTCTTCCACAGA
AAATATTTTGTTATAAGATATCATGGATACAGACACATACAACAACACAC
AAACACGGGAACTTAAAATTGAACCGAAAAACAACTGAGCTAGTTAATGT
GACCCCCAAAATGGGAGCCACCTCCATATTTATCTCATCTTGCCCAAGAT
TCAGGACTTCGAGTCATTTTGGAAGACAGTTGTATGCTCAACCTAATCCT
TGTACTTCAGCTCAGATACTAGGAATCCAGGCATGTCGAACTTCAATGAG
GCCGAATCAGCTTTGAGGTCTTCAACATCTATAGCTTTGTTGTTCACCAA
TCCCTTGTTGAAATCCTTTTCCATATTCCTTTTCAAAAGTTGAATATCTA
AAGTCGGTGAAGGGAGAACCACTGCGA
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: Molecular Function
TermDefinition
GO:0004372glycine hydroxymethyltransferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006544glycine metabolic process
GO:0006563L-serine metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR001085Ser_HO-MeTrfase