GR420884
EST Overview
Libraries
Unigenes
This EST is part of the following unigenes:
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of GR420884 vs. TrEMBL
Match: C6ZJY6_SOYBN (Serine hydroxymethyltransferase OS=Glycine max PE=2 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 1.775e-9 Identity = 38/55 (69.09%), Postives = 41/55 (74.55%), Query Frame = -3 Query: 396 TLDIQLLKRNMEKDFNKGLVNNKAIDVEDLKAD--SASLKFDMPGFLVSELKYKD 554 TL+IQ + KDFNKGLVNNKAI EDLKAD S FDMPGFLVSE+KYKD Sbjct: 427 TLEIQKEHGKLLKDFNKGLVNNKAI--EDLKADVEKFSATFDMPGFLVSEMKYKD 479
BLAST of GR420884 vs. TrEMBL
Match: C6ZJY7_SOYBN (Serine hydroxymethyltransferase OS=Glycine max PE=2 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 2.318e-9 Identity = 38/55 (69.09%), Postives = 41/55 (74.55%), Query Frame = -3 Query: 396 TLDIQLLKRNMEKDFNKGLVNNKAIDVEDLKAD--SASLKFDMPGFLVSELKYKD 554 TL+IQ + KDFNKGLVNNKAI EDLKAD S FDMPGFLVSE+KYKD Sbjct: 444 TLEIQKEHGKLLKDFNKGLVNNKAI--EDLKADVEKFSALFDMPGFLVSEMKYKD 496
BLAST of GR420884 vs. TrEMBL
Match: B9S9Y7_RICCO (Serine hydroxymethyltransferase OS=Ricinus communis GN=RCOM_0523510 PE=3 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 3.348e-8 Identity = 36/57 (63.16%), Postives = 40/57 (70.18%), Query Frame = -3 Query: 396 SPTLDIQLLKRNMEKDFNKGLVNNKAIDVEDLKAD--SASLKFDMPGFLVSELKYKD 560 S TL IQ + KDFNKGLVNNK D+E LKAD S FDMPGFL+SE+KYKD Sbjct: 417 SLTLSIQKEHGKLLKDFNKGLVNNK--DIEALKADVEKFSSSFDMPGFLMSEMKYKD 471
BLAST of GR420884 vs. TrEMBL
Match: Q9FPJ3_ARATH (Serine hydroxymethyltransferase OS=Arabidopsis thaliana GN=AT4g13930/dl3005c PE=2 SV=1) HSP 1 Score: 60.8474 bits (146), Expect = 7.458e-8 Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = -3 Query: 396 TLDIQLLKRNMEKDFNKGLVNNKAIDVEDLKAD--SASLKFDMPGFLVSELKYKD 554 TLDIQ + KDFNKGLVNNK D++ LKAD S ++MPGFL+SE+KYKD Sbjct: 419 TLDIQKTYGKLLKDFNKGLVNNK--DLDQLKADVEKFSASYEMPGFLMSEMKYKD 471
BLAST of GR420884 vs. TrEMBL
Match: O23254_ARATH (Serine hydroxymethyltransferase OS=Arabidopsis thaliana GN=dl3005c PE=1 SV=1) HSP 1 Score: 60.8474 bits (146), Expect = 7.458e-8 Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = -3 Query: 396 TLDIQLLKRNMEKDFNKGLVNNKAIDVEDLKAD--SASLKFDMPGFLVSELKYKD 554 TLDIQ + KDFNKGLVNNK D++ LKAD S ++MPGFL+SE+KYKD Sbjct: 419 TLDIQKTYGKLLKDFNKGLVNNK--DLDQLKADVEKFSASYEMPGFLMSEMKYKD 471
BLAST of GR420884 vs. TrEMBL
Match: D7MHA0_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_915517 PE=4 SV=1) HSP 1 Score: 60.8474 bits (146), Expect = 7.458e-8 Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = -3 Query: 396 TLDIQLLKRNMEKDFNKGLVNNKAIDVEDLKAD--SASLKFDMPGFLVSELKYKD 554 TLDIQ + KDFNKGLVNNK D++ LKAD S ++MPGFL+SE+KYKD Sbjct: 419 TLDIQKTYGKLLKDFNKGLVNNK--DLDQLKADVEKFSASYEMPGFLMSEMKYKD 471
BLAST of GR420884 vs. TrEMBL
Match: A9PL04_POPTM (Serine hydroxymethyltransferase OS=Populus tremuloides GN=SHMT1 PE=2 SV=1) HSP 1 Score: 60.4622 bits (145), Expect = 9.741e-8 Identity = 35/55 (63.64%), Postives = 39/55 (70.91%), Query Frame = -3 Query: 396 TLDIQLLKRNMEKDFNKGLVNNKAIDVEDLKAD--SASLKFDMPGFLVSELKYKD 554 TL IQ + KDFNKGLVNNK D+E LKAD S FDMPGFL+SE+KYKD Sbjct: 419 TLSIQKEYGKLLKDFNKGLVNNK--DIEALKADVEKFSGSFDMPGFLMSEMKYKD 471
BLAST of GR420884 vs. TrEMBL
Match: Q8LBY1_ARATH (Serine hydroxymethyltransferase OS=Arabidopsis thaliana PE=2 SV=1) HSP 1 Score: 59.3066 bits (142), Expect = 2.170e-7 Identity = 32/55 (58.18%), Postives = 40/55 (72.73%), Query Frame = -3 Query: 396 TLDIQLLKRNMEKDFNKGLVNNKAIDVEDLKAD--SASLKFDMPGFLVSELKYKD 554 TLDIQ + KDFNKGLVNNK D++ LKAD S ++MPGFL+SE+KY+D Sbjct: 419 TLDIQKTYGKLLKDFNKGLVNNK--DLDQLKADVEKFSASYEMPGFLMSEMKYQD 471
BLAST of GR420884 vs. TrEMBL
Match: D7SNS3_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_29.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00021046001 PE=4 SV=1) HSP 1 Score: 58.9214 bits (141), Expect = 2.834e-7 Identity = 33/55 (60.00%), Postives = 38/55 (69.09%), Query Frame = -3 Query: 396 TLDIQLLKRNMEKDFNKGLVNNKAIDVEDLKAD--SASLKFDMPGFLVSELKYKD 554 TL IQ + KDFNKGLVNNK D+E+LK D S F+MPGF VSE+KYKD Sbjct: 204 TLKIQKEHGKLLKDFNKGLVNNK--DIEELKVDVEKFSASFEMPGFSVSEMKYKD 256
BLAST of GR420884 vs. TrEMBL
Match: A9P855_POPTR (Serine hydroxymethyltransferase OS=Populus trichocarpa GN=SHMT1 PE=2 SV=1) HSP 1 Score: 58.151 bits (139), Expect = 4.834e-7 Identity = 34/55 (61.82%), Postives = 38/55 (69.09%), Query Frame = -3 Query: 396 TLDIQLLKRNMEKDFNKGLVNNKAIDVEDLKAD--SASLKFDMPGFLVSELKYKD 554 TL IQ + KDFNKGLVNNK D+E LKAD S FDMPGF +SE+KYKD Sbjct: 419 TLSIQKEYGKLLKDFNKGLVNNK--DIEALKADVEKFSGSFDMPGFQMSEMKYKD 471
BLAST of GR420884 vs. TAIR peptide
Match: AT4G13930.1 (| Symbols: SHM4 | serine hydroxymethyltransferase 4 | chr4:8048013-8050021 REVERSE LENGTH=471) HSP 1 Score: 60.8474 bits (146), Expect = 5.719e-10 Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = -3 Query: 396 TLDIQLLKRNMEKDFNKGLVNNKAIDVEDLKAD--SASLKFDMPGFLVSELKYKD 554 TLDIQ + KDFNKGLVNNK D++ LKAD S ++MPGFL+SE+KYKD Sbjct: 419 TLDIQKTYGKLLKDFNKGLVNNK--DLDQLKADVEKFSASYEMPGFLMSEMKYKD 471
BLAST of GR420884 vs. TAIR peptide
Match: AT4G13890.1 (| Symbols: SHM5, EDA36, EDA37 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr4:8032146-8033718 REVERSE LENGTH=470) HSP 1 Score: 51.2174 bits (121), Expect = 4.531e-7 Identity = 26/48 (54.17%), Postives = 30/48 (62.50%), Query Frame = -3 Query: 411 TLDIQLLKRNMEKDFNKGLVNNKAIDVEDLKADSASLKFDMPGFLVSE 554 TLDIQ + KDFNKGLVNNK ID + + FDMPGF +SE Sbjct: 419 TLDIQEQYGKVMKDFNKGLVNNKEIDEIKADVEEFTYDFDMPGFFISE 466 The following BLAST results are available for this feature:
BLAST of GR420884 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl) Total hits: 10
BLAST of GR420884 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide) Total hits: 2
InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >GR420884 ID=GR420884; Name=GR420884; organism=Cicer arietinum; type=EST; length=577bpback to top Annotated Terms
The
following terms have been associated with
this EST:
|