GR912879

EST Overview


Name	GR912879
Unique Name	GR912879
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	453

Libraries


Library Name	Type
LIBEST_024969 Early immune responsive suppression subtracted cDNA libraries of Chickpea (Cicer arietinum cv. WR-315) wilt	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of GR912879 vs. TrEMBL
Match: B0WMY3_CULQU (Putative uncharacterized protein OS=Culex quinquefasciatus GN=CpipJ_CPIJ008468 PE=4 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 3.808e-8
Identity = 29/71 (40.85%), Postives = 43/71 (60.56%), Query Frame = 2

Query:  206 RIPWVXRWLLI-WRIPWVVRWLLI-WRPVNRWFLNWGLINWRLFNWWLVYGRLLNWWLINWGFLYWXLINR 412
            R  +   W LI W   ++V W L+ W  VNR+ + W L+NW L N + VY  L++W+L+NW  + W L+NR
Sbjct:   21 RSNYTVNWYLINW---YLVNWYLVNWYLVNRYQVYWYLVNWYLVNRYQVYWYLIDWYLVNWYLVNWYLVNR 88

[Close]

BLAST of GR912879 vs. TrEMBL
Match: Q59T40_CANAL (Questionable orf OS=Candida albicans GN=CaO19.14167 PE=4 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 7.182e-7
Identity = 29/88 (32.95%), Postives = 42/88 (47.73%), Query Frame = 2

Query:  209 IPWVXRWLLIWRIPWVVRWLLIW--RPVNRWFLNWGLINW--RLFNWWLVYGRLLNW-----------WLINWGFLYWXLINRGFLNW 427
            + W+  W++ W + WVVRW + W  R   RWF+ W  + W  R F WW V G  + W           W + W F+ W +  R F+ W
Sbjct:    6 VVWIMWWVVWWVVWWVVRWFMRWFMRWFMRWFMRW-FVGWFMRWFMWWFV-GWFMRWFMRWFMWRMMRWFVGW-FMRWFM--RWFVRW 88

The following BLAST results are available for this feature:

BLAST of GR912879 vs. TrEMBL

BLAST of GR912879 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 2


Match Name	E-value	Identity	Description
B0WMY3_CULQU	3.808e-8	40.85	Putative uncharacterized protein OS=Culex quinquef...	[more]
Q59T40_CANAL	7.182e-7	32.95	Questionable orf OS=Candida albicans GN=CaO19.1416...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003883	Repetitive proline-rich cell wall protein repeat	PFAM	PF02095	Extensin_1	coord: 6..12 score: 0.42coord: 13..22 score: 0.013coord: 23..32 score: 0.0064coord: 33..41 score: 0.018coord: 43..52 score: 0.0064coord: 53..62 score: 0.033coord: 70..74 score
None	No IPR available	SEG	seg	seg	coord: 6..83 score

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR912879 ID=GR912879; Name=GR912879; organism=Cicer arietinum; type=EST; length=453bp
GATTAGCGTGGTCGCGGCCGAGGTACAAAAGCACCATTTTCCATTTTACA
CTTACATTCTTATCTTAGCAATAGCATTGTAAACAAAGGATTTAAATGAA
GATGCCAATAATATATAATCCTTGCTTCGAAAACTATATATACCTCTTAT
TTTTCACATTTTCTTAATATAACAAGTTTTAGAAACGATTGTCATCATCG
GCAGGAGGATACCCTGGGTGGNGAGGTGGCTTCTCATATGGAGGATACCC
TGGGTAGTGAGGTGGCTTCTCATATGGAGGCCCGTAAACCGGTGGTTTCT
CAACTGGGGGCTTATAAACTGGAGGCTCTTCAATTGGTGGCTTGTATACG
GGAGGCTTCTCAACTGGTGGCTTATAAACTGGGGGTTTCTCTACTGGNGG
CTTATAAATAGGGGGTTTCTCAACTGGGGGTTTGTACCTGCCCGGGCGGC
CGC

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005199	structural constituent of cell wall

Vocabulary: **INTERPRO**
Term	Definition
IPR003883	Pro_rich_cell_wall_rpt

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