GR399404

EST Overview


Name	GR399404
Unique Name	GR399404
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	513

Libraries


Library Name	Type
LIBEST_024783 ICC4958 Slow drought stresses root cDNA library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of GR399404 vs. SwissProt
Match: VPS26_ARATH (Vacuolar protein sorting-associated protein 26 OS=Arabidopsis thaliana GN=At4g27690 PE=2 SV=2)

HSP 1 Score: 53.9138 bits (128), Expect = 5.142e-7
Identity = 24/29 (82.76%), Postives = 28/29 (96.55%), Query Frame = 1

Query:    1 FLNLVLVDEEDRRYFKQQEITMYRLQESS 87
            +LNLVLVDEEDRRYFKQQEIT+YRL+E +
Sbjct:  273 YLNLVLVDEEDRRYFKQQEITLYRLKEDA 301

[Close]

BLAST of GR399404 vs. TrEMBL
Match: B9N808_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_746045 PE=4 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 4.527e-7
Identity = 27/29 (93.10%), Postives = 29/29 (100.00%), Query Frame = 1

Query:    1 FLNLVLVDEEDRRYFKQQEITMYRLQESS 87
            +LNLVLVDEEDRRYFKQQEIT+YRLQESS
Sbjct:  273 YLNLVLVDEEDRRYFKQQEITIYRLQESS 301

[Close]

BLAST of GR399404 vs. TrEMBL
Match: B4FT16_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 4.527e-7
Identity = 27/28 (96.43%), Postives = 28/28 (100.00%), Query Frame = 1

Query:    1 FLNLVLVDEEDRRYFKQQEITMYRLQES 84
            +LNLVLVDEEDRRYFKQQEITMYRLQES
Sbjct:  273 YLNLVLVDEEDRRYFKQQEITMYRLQES 300

[Close]

BLAST of GR399404 vs. TrEMBL
Match: A9PCL0_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_819142 PE=2 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 4.527e-7
Identity = 27/29 (93.10%), Postives = 29/29 (100.00%), Query Frame = 1

Query:    1 FLNLVLVDEEDRRYFKQQEITMYRLQESS 87
            +LNLVLVDEEDRRYFKQQEIT+YRLQESS
Sbjct:  273 YLNLVLVDEEDRRYFKQQEITIYRLQESS 301

[Close]

BLAST of GR399404 vs. TAIR peptide
Match: AT5G53530.1 (| Symbols: VPS26A | vacuolar protein sorting 26A | chr5:21746275-21748156 REVERSE LENGTH=302)

HSP 1 Score: 53.9138 bits (128), Expect = 5.716e-8
Identity = 24/29 (82.76%), Postives = 28/29 (96.55%), Query Frame = 1

Query:    1 FLNLVLVDEEDRRYFKQQEITMYRLQESS 87
            +LNLVLVDEEDRRYFKQQEIT+YRL+E +
Sbjct:  273 YLNLVLVDEEDRRYFKQQEITLYRLKEET 301

[Close]

BLAST of GR399404 vs. TAIR peptide
Match: AT4G27690.2 (| Symbols: VPS26B | vacuolar protein sorting 26B | chr4:13824324-13826235 FORWARD LENGTH=275)

HSP 1 Score: 53.9138 bits (128), Expect = 5.716e-8
Identity = 24/29 (82.76%), Postives = 28/29 (96.55%), Query Frame = 1

Query:    1 FLNLVLVDEEDRRYFKQQEITMYRLQESS 87
            +LNLVLVDEEDRRYFKQQEIT+YRL+E +
Sbjct:  245 YLNLVLVDEEDRRYFKQQEITLYRLKEDA 273

[Close]

BLAST of GR399404 vs. TAIR peptide
Match: AT4G27690.1 (| Symbols: VPS26B | vacuolar protein sorting 26B | chr4:13824019-13826235 FORWARD LENGTH=303)

HSP 1 Score: 53.9138 bits (128), Expect = 5.716e-8
Identity = 24/29 (82.76%), Postives = 28/29 (96.55%), Query Frame = 1

Query:    1 FLNLVLVDEEDRRYFKQQEITMYRLQESS 87
            +LNLVLVDEEDRRYFKQQEIT+YRL+E +
Sbjct:  273 YLNLVLVDEEDRRYFKQQEITLYRLKEDA 301

The following BLAST results are available for this feature:

BLAST of GR399404 vs. SwissProt
BLAST of GR399404 vs. TrEMBL
BLAST of GR399404 vs. TAIR peptide

BLAST of GR399404 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 1


Match Name	E-value	Identity	Description
VPS26_ARATH	5.142e-7	82.76	Vacuolar protein sorting-associated protein 26 OS=...	[more]

BLAST of GR399404 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 3


Match Name	E-value	Identity	Description
B9N808_POPTR	4.527e-7	93.10	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
B4FT16_MAIZE	4.527e-7	96.43	Putative uncharacterized protein OS=Zea mays PE=2 ...	[more]
A9PCL0_POPTR	4.527e-7	93.10	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]

BLAST of GR399404 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 3


Match Name	E-value	Identity	Description
AT5G53530.1	5.716e-8	82.76	\| Symbols: VPS26A \| vacuolar protein sorting 26A \|...	[more]
AT4G27690.2	5.716e-8	82.76	\| Symbols: VPS26B \| vacuolar protein sorting 26B \|...	[more]
AT4G27690.1	5.716e-8	82.76	\| Symbols: VPS26B \| vacuolar protein sorting 26B \|...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 10..26 score

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR399404 ID=GR399404; Name=GR399404; organism=Cicer arietinum; type=EST; length=513bp
TTTTTGAATCTTGTGTTGGTCGATGAAGAGGATAGGCGATATTTCAAGCA
GCAGGAAATCACAATGTACAGGCTGCAAGAATCTTCGTGAAAAATTATCA
TACAGAGAATGAGTATTAGGTTTGTTGATGATAGTAATAAAGAAGATTCT
GATGAACATGGAAGAGCTCTCAAGTCCGGGAATCAGTCAGTGAATCCTGT
TTTTTCATGGGGTAAAATGGTTTGGCATTCTAACATGCTTGAAATTCAAC
ATATGCAATGATGTACATTGACTGATCTGTTATACGATATTGAAGAAAGC
ACCTCTTATCTGTGCTGGATTGTTGATATCCATGAGAATGTGTTATATGT
GGTTGAATATTTGTTGTGATATCTTTAAGACTCTGGTTTTCCTGTTATCT
ACATTGCACTACCTCATGAAACAATGATGTCCGTTTTTCAATTATTTTGT
ACAAACAGAATCTGTTGTTGGATACCAATTTGTTTTGTTTGTTTCTGCAT
TGGCNNANNANAN

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