GR400246

EST Overview
NameGR400246
Unique NameGR400246
TypeEST
OrganismCicer arietinum (chickpea)
Sequence length343
Libraries
Library NameType
LIBEST_024783 ICC4958 Slow drought stresses root cDNA librarycdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Homology
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BLAST of GR400246 vs. TrEMBL
Match: D7SZI6_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_49.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00027840001 PE=4 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.204e-11
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = -3 
Query:  183 SSNEVNTLKNLISQDETPTTSTIQQKSFRTFSLLSPFRSKNSEKKV 320
            SS+EV+TLKNLISQDETPT  T  QKS R+FSLLSPFRSK S+KK+
Sbjct: 1169 SSSEVHTLKNLISQDETPTDGTTAQKSSRSFSLLSPFRSKTSDKKL 1214
[Close]
BLAST of GR400246 vs. TrEMBL
Match: B9HKH7_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_803758 PE=4 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 2.470e-7
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = -3 
Query:  183 SSNEVNTLKNLISQDETPTTSTIQQKSFRTFSLLSPFRSKNSEKKV 320
            SS+EV+TLKNLISQDET T  +  QK+ R FSLLSPFRSK  EKK+
Sbjct: 1172 SSSEVHTLKNLISQDETLTAGS-NQKTSRHFSLLSPFRSKTGEKKL 1216
[Close]
BLAST of GR400246 vs. TAIR peptide
Match: AT5G43310.2 (| Symbols: | COP1-interacting protein-related | chr5:17379735-17385387 REVERSE LENGTH=1180)

HSP 1 Score: 54.299 bits (129), Expect = 1.800e-8
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = -3 
Query:  195 SSNEVNTLKNLISQDETPTTSTIQQKSFRTFSLLSPFRSKNS 320
            +++E  TLKNLISQDETPT +   QKS R FSLLSPF++K +
Sbjct: 1137 TTSEAFTLKNLISQDETPTAAAASQKSSRHFSLLSPFKNKKT 1178
[Close]
BLAST of GR400246 vs. TAIR peptide
Match: AT5G43310.1 (| Symbols: | COP1-interacting protein-related | chr5:17379735-17385387 REVERSE LENGTH=1237)

HSP 1 Score: 54.299 bits (129), Expect = 1.800e-8
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = -3 
Query:  195 SSNEVNTLKNLISQDETPTTSTIQQKSFRTFSLLSPFRSKNS 320
            +++E  TLKNLISQDETPT +   QKS R FSLLSPF++K +
Sbjct: 1194 TTSEAFTLKNLISQDETPTAAAASQKSSRHFSLLSPFKNKKT 1235
The following BLAST results are available for this feature:
BLAST of GR400246 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 2
Match NameE-valueIdentityDescription
D7SZI6_VITVI8.204e-1176.09Whole genome shotgun sequence of line PN40024, sca... [more]
B9HKH7_POPTR2.470e-769.57Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
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BLAST of GR400246 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT5G43310.21.800e-861.90| Symbols: | COP1-interacting protein-related | c... [more]
AT5G43310.11.800e-861.90| Symbols: | COP1-interacting protein-related | c... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 4..7
score
NoneNo IPR availableSEGsegsegcoord: 32..45
score

Properties
Property NameValue
Singlet in analysisCicer arietinum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GR400246 ID=GR400246; Name=GR400246; organism=Cicer arietinum; type=EST; length=343bp
CATCATTCTTAATCACTTGGGGATATATATCAACATCGTAACATGAATAT
ACAAAGATCAATTTCATATCAATACATAATTCAGTTATCTTTTACTGCTT
ACATTTAAGACCAAAAATAAAAATCAAGCTTGGGACTGCATCAACCTTAA
CAACGACAGCTTCCACTCTATCAAGCCATCATTACCTTTTTTTCACTATT
CTTGCTTCGAAATGGGGATAACAACGAAAATGTGCGAAAAGACTTTTGCT
GAATTGTGCTGGTAGTTGGAGTTTCATCTTGAGAGATCAAATTCTTTAAA
GTATTAACTTCGTTAGAGGAACCGTTAATTCCAATCTCCCCGC
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