GR397608

EST Overview


Name	GR397608
Unique Name	GR397608
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	531

Libraries


Library Name	Type
LIBEST_024782 ICC4958 field drought stressed root cDNA library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

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BLAST of GR397608 vs. SwissProt
Match: SSU72_DICDI (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Dictyostelium discoideum GN=ssu72 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 6.627e-24
Identity = 56/113 (49.56%), Postives = 77/113 (68.14%), Query Frame = -2

Query:  141 RNGILPMLKRNSSVKLAPQRWQENAADGTFDVVITFEEKVFDMVIEDLHNRD--HVLLKTVLVVNLEVKDNHEEAAIGARLTLDLCQEIEAVESWEESIDDIIVGFEKQHRRK 473
            RNG+L ML+RN SVKLAP++WQE      F++V TF+++V+D VIEDL  RD    LL+ V ++NL+VKD HEEA  GA+  L++   IE   +WEE +D I+  F KQ  R+
Sbjct:   95 RNGLLNMLERNISVKLAPEKWQEEQ-QSKFEIVYTFDQRVYDAVIEDLLQRDVSSSLLQPVHIINLQVKDTHEEAVGGAQHALEITSIIEKTLNWEEKLDQILEDFYKQTSRQ 206

HSP 2 Score: 24.6386 bits (52), Expect = 6.627e-24
Identity = 9/19 (47.37%), Postives = 13/19 (68.42%), Query Frame = -3

Query:  473 FGTPYKHMLDELRRKDPEL 529
            FGTPY+ +   L+ +D EL
Sbjct:   74 FGTPYQEIYTSLKNQDQEL 92

[Close]

BLAST of GR397608 vs. SwissProt
Match: SSU72_MOUSE (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Mus musculus GN=Ssu72 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.177e-21
Identity = 51/111 (45.95%), Postives = 77/111 (69.37%), Query Frame = -2

Query:  144 TRNGILPMLKRNSSVKLAPQRWQENAADGTFDVVITFEEKVFDMVIEDLHNRDHVLLKTVLVVNLEVKDNHEEAAIGARLTLDLCQEIEAVESWEESIDDIIVGFEKQHRR 476
            T+NGIL ML RN  +K  P+R+Q N  D  FD+++T EE+V+D V+EDL++R+    + V VVN++++DNHEEA +GA L  +LCQ I+  E  E  ID+++  FE++  R
Sbjct:   77 TQNGILHMLDRNKRIKPRPERFQ-NCTD-LFDLILTCEERVYDQVVEDLNSREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGR 185

[Close]

BLAST of GR397608 vs. SwissProt
Match: SSU72_RAT (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Rattus norvegicus GN=Ssu72 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.761e-21
Identity = 51/111 (45.95%), Postives = 77/111 (69.37%), Query Frame = -2

Query:  144 TRNGILPMLKRNSSVKLAPQRWQENAADGTFDVVITFEEKVFDMVIEDLHNRDHVLLKTVLVVNLEVKDNHEEAAIGARLTLDLCQEIEAVESWEESIDDIIVGFEKQHRR 476
            T+NGIL ML RN  +K  P+R+Q N  D  FD+++T EE+V+D V+EDL++R+    + V VVN++++DNHEEA +GA L  +LCQ I+  E  E  ID+++  FE++  R
Sbjct:   77 TQNGILHMLDRNKRIKPRPERFQ-NCKD-LFDLILTCEERVYDQVVEDLNSREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGR 185

[Close]

BLAST of GR397608 vs. SwissProt
Match: SSU72_HUMAN (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Homo sapiens GN=SSU72 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.761e-21
Identity = 51/111 (45.95%), Postives = 77/111 (69.37%), Query Frame = -2

Query:  144 TRNGILPMLKRNSSVKLAPQRWQENAADGTFDVVITFEEKVFDMVIEDLHNRDHVLLKTVLVVNLEVKDNHEEAAIGARLTLDLCQEIEAVESWEESIDDIIVGFEKQHRR 476
            T+NGIL ML RN  +K  P+R+Q N  D  FD+++T EE+V+D V+EDL++R+    + V VVN++++DNHEEA +GA L  +LCQ I+  E  E  ID+++  FE++  R
Sbjct:   77 TQNGILHMLDRNKRIKPRPERFQ-NCKD-LFDLILTCEERVYDQVVEDLNSREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGR 185

[Close]

BLAST of GR397608 vs. SwissProt
Match: SSU72_CHICK (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Gallus gallus GN=SSU72 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.761e-21
Identity = 50/111 (45.05%), Postives = 77/111 (69.37%), Query Frame = -2

Query:  144 TRNGILPMLKRNSSVKLAPQRWQENAADGTFDVVITFEEKVFDMVIEDLHNRDHVLLKTVLVVNLEVKDNHEEAAIGARLTLDLCQEIEAVESWEESIDDIIVGFEKQHRR 476
            T+NGIL ML RN  +K  P+R+Q N  D  FD+++T EE+V+D V+EDL++R+    + V V+N++++DNHEEA +GA L  +LCQ I+  E  E  ID+++  FE++  R
Sbjct:   77 TQNGILHMLDRNKRIKPRPERFQ-NCKD-VFDLILTCEERVYDQVVEDLNSREQETCQPVHVINVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGR 185

[Close]

BLAST of GR397608 vs. SwissProt
Match: SSU72_BOVIN (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Bos taurus GN=SSU72 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 8.830e-21
Identity = 50/111 (45.05%), Postives = 77/111 (69.37%), Query Frame = -2

Query:  144 TRNGILPMLKRNSSVKLAPQRWQENAADGTFDVVITFEEKVFDMVIEDLHNRDHVLLKTVLVVNLEVKDNHEEAAIGARLTLDLCQEIEAVESWEESIDDIIVGFEKQHRR 476
            T+NGIL ML RN  +K  P+R+Q N  D  FD+++T EE+V+D V+EDL++R+    + V V+N++++DNHEEA +GA L  +LCQ I+  E  E  ID+++  FE++  R
Sbjct:   77 TQNGILHMLDRNKRIKPRPERFQ-NCKD-LFDLILTCEERVYDQVVEDLNSREQETCQPVHVINVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGR 185

[Close]

BLAST of GR397608 vs. SwissProt
Match: SSU72_DANRE (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Danio rerio GN=ssu72 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.967e-20
Identity = 50/111 (45.05%), Postives = 76/111 (68.47%), Query Frame = -2

Query:  147 TRNGILPMLKRNSSVKLAPQRWQENAADGTFDVVITFEEKVFDMVIEDLHNRDHVLLKTVLVVNLEVKDNHEEAAIGARLTLDLCQEIEAVESWEESIDDIIVGF-EKQHR 476
            T+NGIL ML RN  +K  P+R+Q  +    FD+VIT EE+V+D V+EDL++R+    + V V+N++++DNHEEA +GA L  +LCQ I+  +  E  +D+++  F EK HR
Sbjct:   77 TQNGILHMLDRNKRIKSRPERFQ--SCRDQFDLVITCEERVYDQVLEDLNSREQESFQPVHVINVDIQDNHEEATLGAFLICELCQCIQHTDDMENEMDELLQEFEEKSHR 185

[Close]

BLAST of GR397608 vs. SwissProt
Match: SSU72_XENLA (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Xenopus laevis GN=ssu72 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.356e-20
Identity = 51/111 (45.95%), Postives = 76/111 (68.47%), Query Frame = -2

Query:  144 TRNGILPMLKRNSSVKLAPQRWQENAADGTFDVVITFEEKVFDMVIEDLHNRDHVLLKTVLVVNLEVKDNHEEAAIGARLTLDLCQEIEAVESWEESIDDIIVGFEKQHRR 476
            T+NGIL ML RN  +K  P+R+Q N  D  FD+VIT EE+V+D V+E+L++R+    + V V+N++++DNHEEA +GA L  +LCQ I+  E  E  ID+++  FE +  R
Sbjct:   77 TQNGILHMLDRNRRIKPRPERFQ-NCKD-YFDLVITCEERVYDQVVEELNSREQETCQPVHVINVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEDKSGR 185

[Close]

BLAST of GR397608 vs. SwissProt
Match: SSU72_SCHPO (RNA polymerase II subunit A C-terminal domain phosphatase ssu72 OS=Schizosaccharomyces pombe GN=ssu72 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.275e-19
Identity = 48/117 (41.03%), Postives = 72/117 (61.54%), Query Frame = -2

Query:  150 ASQKRP*TRNGILPMLKRNSSVKLAPQRWQENAADGTFDVVITFEEKVFDMVIEDLHNRDHVLLKTVLVVNLEVKDNHEEAAIGARLTLDLCQEI-EAVESWEESIDDIIVGFEKQH 497
            A   R  T NG+L ML RN  +K AP RWQ+   D  +++VIT EE+ +D + EDL+ R   L + V ++N+++KDNHEEA++G +  LDL  ++ EA +  EE    I+  F+  H
Sbjct:   71 AQDSRLYTANGLLKMLDRNRRIKRAPCRWQDQ--DSIYNIVITCEERCYDAICEDLYRRGETLNRPVYLINVDIKDNHEEASVGGKAILDLVNKLTEAQDKLEELFPSIMADFQSNH 185

[Close]

BLAST of GR397608 vs. SwissProt
Match: SSU72_CRYNE (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Cryptococcus neoformans GN=SSU72 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.196e-18
Identity = 48/109 (44.04%), Postives = 66/109 (60.55%), Query Frame = -2

Query:  150 TRNGILPMLKRNSSVKLAPQRWQENAADGTFDVVITFEEKVFDMVIEDLHNRDHVLLKTVLVVNLEVKDNHEEAAIGARLTLDLCQEIEAVESWEESIDDIIVGFEKQH 476
            TRNGILPML RN  VK AP++WQE       DVVIT EE+ +D V +DL  R     + + ++N+E+KDN EEA I  +  L+L + IEA +  +  ID I+     +H
Sbjct:   69 TRNGILPMLDRNRKVKKAPEKWQE-LKSVLADVVITCEERCYDAVCDDLLTRSGEYNRPIHIINIEIKDNPEEAHIAGQSILELARAIEASDDLDSDIDAILNAHGDKH 176

HSP 2 Score: 24.6386 bits (52), Expect = 1.196e-18
Identity = 9/19 (47.37%), Postives = 13/19 (68.42%), Query Frame = -3

Query:  473 FGTPYKHMLDELRRKDPEL 529
            FGTPY  +  +L  +DP+L
Sbjct:   49 FGTPYDDIYRDLESQDPQL 67

[Close]

BLAST of GR397608 vs. TrEMBL
Match: D7T1F4_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_9.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00037420001 PE=4 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.005e-57
Identity = 97/111 (87.39%), Postives = 105/111 (94.59%), Query Frame = -2

Query:  141 RNGILPMLKRNSSVKLAPQRWQENAADGTFDVVITFEEKVFDMVIEDLHNRDHVLLKTVLVVNLEVKDNHEEAAIGARLTLDLCQEIEAVESWEESIDDIIVGFEKQHRRK 473
            RNGILPMLKRNSSVK APQRWQ+NAADG FDVV TFEEKVFDMV+EDLHNRDHVL+KTVLV+NLEVKDNHEEAAIGARL LDLCQEIEA ESWE+S+DD++ GFEKQHRRK
Sbjct:   75 RNGILPMLKRNSSVKTAPQRWQDNAADGPFDVVFTFEEKVFDMVVEDLHNRDHVLMKTVLVINLEVKDNHEEAAIGARLALDLCQEIEATESWEDSVDDVVSGFEKQHRRK 185

HSP 2 Score: 41.2022 bits (95), Expect = 1.005e-57
Identity = 16/19 (84.21%), Postives = 18/19 (94.74%), Query Frame = -3

Query:  473 FGTPYKHMLDELRRKDPEL 529
            FGTPYKHM D+LRRKDP+L
Sbjct:   54 FGTPYKHMFDDLRRKDPDL 72

[Close]

BLAST of GR397608 vs. TrEMBL
Match: C6SZ62_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 3.788e-57
Identity = 97/111 (87.39%), Postives = 106/111 (95.50%), Query Frame = -2

Query:  141 RNGILPMLKRNSSVKLAPQRWQENAADGTFDVVITFEEKVFDMVIEDLHNRDHVLLKTVLVVNLEVKDNHEEAAIGARLTLDLCQEIEAVESWEESIDDIIVGFEKQHRRK 473
            RNGI PMLKRNS+VKLAPQRWQENAADG+FDVV+TFEEKVFDMVIEDLHNRDH LLKTVLV+NLEVKDNH+EAA+GARLTLDLC+EIEA ESWEESID+II GFE +HRRK
Sbjct:   75 RNGIFPMLKRNSTVKLAPQRWQENAADGSFDVVVTFEEKVFDMVIEDLHNRDHALLKTVLVINLEVKDNHDEAAVGARLTLDLCREIEAAESWEESIDEIIAGFENKHRRK 185

HSP 2 Score: 40.4318 bits (93), Expect = 3.788e-57
Identity = 15/19 (78.95%), Postives = 19/19 (100.00%), Query Frame = -3

Query:  473 FGTPYKHMLDELRRKDPEL 529
            FGTPYKHM+++LRRKDP+L
Sbjct:   54 FGTPYKHMIEDLRRKDPDL 72

[Close]

BLAST of GR397608 vs. TrEMBL
Match: B9RPG0_RICCO (Protein SSU72, putative OS=Ricinus communis GN=RCOM_1370030 PE=4 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.871e-54
Identity = 94/111 (84.68%), Postives = 105/111 (94.59%), Query Frame = -2

Query:  141 RNGILPMLKRNSSVKLAPQRWQENAADGTFDVVITFEEKVFDMVIEDLHNRDHVLLKTVLVVNLEVKDNHEEAAIGARLTLDLCQEIEAVESWEESIDDIIVGFEKQHRRK 473
            RNGILPMLKRNSSVKLAPQRWQ+NAADG+FDVV +FEEKVFDMVIEDLHNRDHVL+++VLV+NLEVKDNHEEAAIGARL L+LCQEIEA ESWE+SID+II  FE +HRRK
Sbjct:   75 RNGILPMLKRNSSVKLAPQRWQDNAADGSFDVVFSFEEKVFDMVIEDLHNRDHVLMRSVLVINLEVKDNHEEAAIGARLALELCQEIEAAESWEDSIDEIITAFETKHRRK 185

HSP 2 Score: 38.1206 bits (87), Expect = 2.871e-54
Identity = 15/19 (78.95%), Postives = 17/19 (89.47%), Query Frame = -3

Query:  473 FGTPYKHMLDELRRKDPEL 529
            FGTPYK M D+LRRKDP+L
Sbjct:   54 FGTPYKQMFDDLRRKDPDL 72

[Close]

BLAST of GR397608 vs. TrEMBL
Match: B9IEE3_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_775960 PE=4 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 8.293e-54
Identity = 92/111 (82.88%), Postives = 104/111 (93.69%), Query Frame = -2

Query:  141 RNGILPMLKRNSSVKLAPQRWQENAADGTFDVVITFEEKVFDMVIEDLHNRDHVLLKTVLVVNLEVKDNHEEAAIGARLTLDLCQEIEAVESWEESIDDIIVGFEKQHRRK 473
            RNGILPMLKRNS VKLAPQRWQ+NAADG+F VV TFEEKVFDMV+EDLHNRDHVLLK+VLV+NLEVKDNHEEAA+G +LTL+LCQ+IEAVESWE+SID+II  FE +HRRK
Sbjct:   75 RNGILPMLKRNSGVKLAPQRWQDNAADGSFSVVFTFEEKVFDMVLEDLHNRDHVLLKSVLVINLEVKDNHEEAAVGGQLTLELCQKIEAVESWEDSIDEIITAFEAKHRRK 185

HSP 2 Score: 39.2762 bits (90), Expect = 8.293e-54
Identity = 16/19 (84.21%), Postives = 17/19 (89.47%), Query Frame = -3

Query:  473 FGTPYKHMLDELRRKDPEL 529
            FGTPYK M D+LRRKDPEL
Sbjct:   54 FGTPYKQMFDDLRRKDPEL 72

[Close]

BLAST of GR397608 vs. TrEMBL
Match: D7KRM7_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_895246 PE=4 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 3.077e-50
Identity = 86/111 (77.48%), Postives = 99/111 (89.19%), Query Frame = -2

Query:  141 RNGILPMLKRNSSVKLAPQRWQENAADGTFDVVITFEEKVFDMVIEDLHNRDHVLLKTVLVVNLEVKDNHEEAAIGARLTLDLCQEIEAVESWEESIDDIIVGFEKQHRRK 473
            RNGIL MLKRN SVKLAPQRWQ+NA DG FDVV+TFEEKVFD V+EDL+NR+  L+KT+LV+NLEVKDNHEEAAIG RL L+LCQEIE  E+WE++IDDI+ GFEKQHRRK
Sbjct:   75 RNGILQMLKRNLSVKLAPQRWQDNAGDGVFDVVMTFEEKVFDSVLEDLNNREQSLMKTILVMNLEVKDNHEEAAIGGRLALELCQEIEGNETWEDTIDDIVAGFEKQHRRK 185

HSP 2 Score: 40.4318 bits (93), Expect = 3.077e-50
Identity = 17/19 (89.47%), Postives = 17/19 (89.47%), Query Frame = -3

Query:  473 FGTPYKHMLDELRRKDPEL 529
            FGTPYK M DELRRKDPEL
Sbjct:   54 FGTPYKQMFDELRRKDPEL 72

[Close]

BLAST of GR397608 vs. TrEMBL
Match: Q9C9T0_ARATH (Putative uncharacterized protein At1g73820 OS=Arabidopsis thaliana GN=At1g73820/F25P22_24 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.158e-49
Identity = 85/111 (76.58%), Postives = 98/111 (88.29%), Query Frame = -2

Query:  141 RNGILPMLKRNSSVKLAPQRWQENAADGTFDVVITFEEKVFDMVIEDLHNRDHVLLKTVLVVNLEVKDNHEEAAIGARLTLDLCQEIEAVESWEESIDDIIVGFEKQHRRK 473
            RNGIL M+KRN SVKLAPQRWQ+NA DG FDVV+TFEEKVFD V+EDL+NR+  L KT+LV+NLEVKDNHEEAAIG RL L+LCQEIE  E+WE++IDDI+ GFEKQHRRK
Sbjct:   75 RNGILQMIKRNLSVKLAPQRWQDNAGDGVFDVVMTFEEKVFDSVLEDLNNREQSLTKTILVMNLEVKDNHEEAAIGGRLALELCQEIEGNETWEDTIDDIVAGFEKQHRRK 185

HSP 2 Score: 40.4318 bits (93), Expect = 1.158e-49
Identity = 17/19 (89.47%), Postives = 17/19 (89.47%), Query Frame = -3

Query:  473 FGTPYKHMLDELRRKDPEL 529
            FGTPYK M DELRRKDPEL
Sbjct:   54 FGTPYKQMFDELRRKDPEL 72

[Close]

BLAST of GR397608 vs. TrEMBL
Match: C0PT75_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.780e-47
Identity = 81/111 (72.97%), Postives = 99/111 (89.19%), Query Frame = -2

Query:  141 RNGILPMLKRNSSVKLAPQRWQENAADGTFDVVITFEEKVFDMVIEDLHNRDHVLLKTVLVVNLEVKDNHEEAAIGARLTLDLCQEIEAVESWEESIDDIIVGFEKQHRRK 473
            RNG+L MLKRN +VK+APQRWQENA DG FDVV TFEE+VFDMVIEDL NR+ +L+++VLVVNL+VKD+HEEAA+GARL LDLCQ++EA  SWE+ IDDI++ FE+QHRRK
Sbjct:   75 RNGLLQMLKRNLNVKMAPQRWQENAVDGPFDVVFTFEERVFDMVIEDLQNREPILMRSVLVVNLDVKDSHEEAAVGARLALDLCQKLEAANSWEDEIDDIVMRFERQHRRK 185

HSP 2 Score: 36.965 bits (84), Expect = 1.780e-47
Identity = 14/19 (73.68%), Postives = 17/19 (89.47%), Query Frame = -3

Query:  473 FGTPYKHMLDELRRKDPEL 529
            FGTPY+ M D+L+RKDPEL
Sbjct:   54 FGTPYRRMFDDLKRKDPEL 72

[Close]

BLAST of GR397608 vs. TrEMBL
Match: Q2QX64_ORYSJ (Os12g0168200 protein OS=Oryza sativa subsp. japonica GN=Os12g0168200 PE=2 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 2.961e-44
Identity = 74/112 (66.07%), Postives = 98/112 (87.50%), Query Frame = -2

Query:  141 RNGILPMLKRNSSVKLAPQRWQENAADGTFDVVITFEEKVFDMVIEDLHNRDHVLLKTVLVVNLEVKDNHEEAAIGARLTLDLCQEIE-AVESWEESIDDIIVGFEKQHRRK 473
            RNG+LPMLKRN+SVKLAPQRWQ+NA DG FDV+ +FEE+VFD++++D+HNR+  +LK  L++N++VKDNHEEA +GA+L LDLCQ++E A E WEE IDD+I+ FEKQH+RK
Sbjct:   81 RNGLLPMLKRNTSVKLAPQRWQDNAGDGLFDVIFSFEERVFDLIVDDMHNREQRMLKNALIINMDVKDNHEEAGVGAKLALDLCQKLEGADEDWEEIIDDLIITFEKQHKRK 192

HSP 2 Score: 33.113 bits (74), Expect = 2.961e-44
Identity = 13/19 (68.42%), Postives = 16/19 (84.21%), Query Frame = -3

Query:  473 FGTPYKHMLDELRRKDPEL 529
            FGTPY  + D+LRRKDP+L
Sbjct:   60 FGTPYNVIYDDLRRKDPDL 78

[Close]

BLAST of GR397608 vs. TrEMBL
Match: B4FVM8_MAIZE (Protein SSU72 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.464e-43
Identity = 71/112 (63.39%), Postives = 100/112 (89.29%), Query Frame = -2

Query:  141 RNGILPMLKRNSSVKLAPQRWQENAADGTFDVVITFEEKVFDMVIEDLHNRDHVLLKTVLVVNLEVKDNHEEAAIGARLTLDLCQEIEAVE-SWEESIDDIIVGFEKQHRRK 473
            RNG+LPMLKRN+SVKLAPQRWQ+NA DG FD+++TFEE+VFD+V+ED++NR+  L+K VL++N++VKDNHEEA +GA+L ++LCQ++EA++  WE+ IDD+I  FEKQH+R+
Sbjct:   79 RNGLLPMLKRNTSVKLAPQRWQDNAGDGVFDMIMTFEERVFDLVVEDMNNREPRLMKCVLIINMDVKDNHEEAGVGAKLAVELCQKLEAIDGDWEDIIDDLITAFEKQHKRR 190

HSP 2 Score: 33.8834 bits (76), Expect = 2.464e-43
Identity = 14/19 (73.68%), Postives = 16/19 (84.21%), Query Frame = -3

Query:  473 FGTPYKHMLDELRRKDPEL 529
            FGTPY  + D+LRRKDPEL
Sbjct:   58 FGTPYGAIYDDLRRKDPEL 76

[Close]

BLAST of GR397608 vs. TrEMBL
Match: C5YSM7_SORBI (Putative uncharacterized protein Sb08g004310 OS=Sorghum bicolor GN=Sb08g004310 PE=4 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 9.260e-43
Identity = 71/112 (63.39%), Postives = 99/112 (88.39%), Query Frame = -2

Query:  141 RNGILPMLKRNSSVKLAPQRWQENAADGTFDVVITFEEKVFDMVIEDLHNRDHVLLKTVLVVNLEVKDNHEEAAIGARLTLDLCQEIEAVE-SWEESIDDIIVGFEKQHRRK 473
            RNG+LPMLKRN+SVKLAPQRWQ+NA DG FD+++TFEE+VFD+V+ED+ NR+  L+K VL++N++VKDNHEEA +GA+L ++LCQ++EA++  WE+ IDD+I  FEKQH+R+
Sbjct:   80 RNGLLPMLKRNTSVKLAPQRWQDNAGDGVFDMIMTFEERVFDLVVEDMSNREPRLMKCVLIINMDVKDNHEEAGVGAKLAVELCQKLEAIDGDWEDIIDDLITAFEKQHKRR 191

HSP 2 Score: 32.7278 bits (73), Expect = 9.260e-43
Identity = 13/19 (68.42%), Postives = 16/19 (84.21%), Query Frame = -3

Query:  473 FGTPYKHMLDELRRKDPEL 529
            FGTPY  + D+LRRKDP+L
Sbjct:   59 FGTPYGAIYDDLRRKDPDL 77

[Close]

BLAST of GR397608 vs. TAIR peptide
Match: AT1G73820.1 (| Symbols: | Ssu72-like family protein | chr1:27755740-27757158 REVERSE LENGTH=193)

HSP 1 Score: 180.644 bits (457), Expect = 9.707e-52
Identity = 85/111 (76.58%), Postives = 98/111 (88.29%), Query Frame = -2

Query:  141 RNGILPMLKRNSSVKLAPQRWQENAADGTFDVVITFEEKVFDMVIEDLHNRDHVLLKTVLVVNLEVKDNHEEAAIGARLTLDLCQEIEAVESWEESIDDIIVGFEKQHRRK 473
            RNGIL M+KRN SVKLAPQRWQ+NA DG FDVV+TFEEKVFD V+EDL+NR+  L KT+LV+NLEVKDNHEEAAIG RL L+LCQEIE  E+WE++IDDI+ GFEKQHRRK
Sbjct:   75 RNGILQMIKRNLSVKLAPQRWQDNAGDGVFDVVMTFEEKVFDSVLEDLNNREQSLTKTILVMNLEVKDNHEEAAIGGRLALELCQEIEGNETWEDTIDDIVAGFEKQHRRK 185

HSP 2 Score: 40.4318 bits (93), Expect = 9.707e-52
Identity = 17/19 (89.47%), Postives = 17/19 (89.47%), Query Frame = -3

Query:  473 FGTPYKHMLDELRRKDPEL 529
            FGTPYK M DELRRKDPEL
Sbjct:   54 FGTPYKQMFDELRRKDPEL 72

The following BLAST results are available for this feature:

BLAST of GR397608 vs. SwissProt
BLAST of GR397608 vs. TrEMBL
BLAST of GR397608 vs. TAIR peptide

BLAST of GR397608 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
SSU72_DICDI	6.627e-24	49.56	RNA polymerase II subunit A C-terminal domain phos...	[more]
SSU72_MOUSE	5.177e-21	45.95	RNA polymerase II subunit A C-terminal domain phos...	[more]
SSU72_RAT	6.761e-21	45.95	RNA polymerase II subunit A C-terminal domain phos...	[more]
SSU72_HUMAN	6.761e-21	45.95	RNA polymerase II subunit A C-terminal domain phos...	[more]
SSU72_CHICK	6.761e-21	45.05	RNA polymerase II subunit A C-terminal domain phos...	[more]
SSU72_BOVIN	8.830e-21	45.05	RNA polymerase II subunit A C-terminal domain phos...	[more]
SSU72_DANRE	1.967e-20	45.05	RNA polymerase II subunit A C-terminal domain phos...	[more]
SSU72_XENLA	3.356e-20	45.95	RNA polymerase II subunit A C-terminal domain phos...	[more]
SSU72_SCHPO	1.275e-19	41.03	RNA polymerase II subunit A C-terminal domain phos...	[more]
SSU72_CRYNE	1.196e-18	44.04	RNA polymerase II subunit A C-terminal domain phos...	[more]

BLAST of GR397608 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
D7T1F4_VITVI	1.005e-57	87.39	Whole genome shotgun sequence of line PN40024, sca...	[more]
C6SZ62_SOYBN	3.788e-57	87.39	Putative uncharacterized protein OS=Glycine max PE...	[more]
B9RPG0_RICCO	2.871e-54	84.68	Protein SSU72, putative OS=Ricinus communis GN=RCO...	[more]
B9IEE3_POPTR	8.293e-54	82.88	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
D7KRM7_ARALY	3.077e-50	77.48	Putative uncharacterized protein OS=Arabidopsis ly...	[more]
Q9C9T0_ARATH	1.158e-49	76.58	Putative uncharacterized protein At1g73820 OS=Arab...	[more]
C0PT75_PICSI	1.780e-47	72.97	Putative uncharacterized protein OS=Picea sitchens...	[more]
Q2QX64_ORYSJ	2.961e-44	66.07	Os12g0168200 protein OS=Oryza sativa subsp. japoni...	[more]
B4FVM8_MAIZE	2.464e-43	63.39	Protein SSU72 OS=Zea mays PE=2 SV=1	[more]
C5YSM7_SORBI	9.260e-43	63.39	Putative uncharacterized protein Sb08g004310 OS=So...	[more]

BLAST of GR397608 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 1


Match Name	E-value	Identity	Description
AT1G73820.1	9.707e-52	76.58	\| Symbols: \| Ssu72-like family protein \| chr1:277...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006811	RNA polymerase II subunit A	PANTHER	PTHR20383	FAMILY NOT NAMED	coord: 2..120 score: 5.9
IPR006811	RNA polymerase II subunit A	PFAM	PF04722	Ssu72	coord: 2..120 score: 2
None	No IPR available	PANTHER	PTHR20383:SF2	gb def: Hypothetical protein F25P22.24 (Hypothetical protein At1g73820/F25P22_24) (Hypot	coord: 2..120 score: 5.9

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR397608 ID=GR397608; Name=GR397608; organism=Cicer arietinum; type=EST; length=531bp
GTAGTTTAAGCCTTCTAAATTTCAATGCACAACAATATTACATCAATTTG
TACTTACATCAATGTTATACAAAATGTTAAACAAAAATTTCATAAGAAAA
AAATGTAATTATTTTAGTAAAAGGAGATGCTATAAAGAAGCTTCCTCCTA
TGTTGTTTTTCAAAACCAACAATAATATCATCAATTGACTCCTCCCATGA
TTCAACAGCTTCAATCTCTTGACAAAGATCTAAAGTAAGCCTTGCGCCTA
TAGCGGCTTCCTCGTGGTTATCCTTCACCTCCAAGTTGACTACCAACACC
GTTTTCAATAAAACGTGATCTCTATTATGGAGATCTTCAATAACCATATC
AAAAACTTTTTCTTCAAATGTGATTACCACATCAAATGTGCCATCAGCCG
CATTTTCTTGCCATCTTTGAGGCGCCAATTTCACACTTGAATTTCTTTTA
AGCATCGGCAGGATTCCATTTCGAGTTCAGGGTCTTTTCTGCGAAGCTCA
TCAAGCATATGCTTATAAGGAGTTCCAAATT

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **Molecular Function**
Term	Definition
GO:0004721	phosphoprotein phosphatase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0006397	mRNA processing

Vocabulary: **INTERPRO**
Term	Definition
IPR006811	RNA_pol_II_suA

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