GR397950

EST Overview
NameGR397950
Unique NameGR397950
TypeEST
OrganismCicer arietinum (chickpea)
Sequence length339
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Homology
BLAST of GR397950 vs. TrEMBL
Match: C6SYN9_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 2.244e-8
Identity = 36/74 (48.65%), Postives = 40/74 (54.05%), Query Frame = 3
Query:   78 SKLTISTSPTSERGS-----VQTSLQKAQCLCSPTTHEGSFRCRLHXXXXXXXXXXXXXIADSNDNKAVVS*NT 284
            +KL +STSP S+ GS        SL K QCLCSPTTHEGSFRCRLH                   NK VVS +T
Sbjct:    8 NKLIVSTSPKSDSGSGGGGGAVGSLPKGQCLCSPTTHEGSFRCRLHRGPTASPTNWMKRSKSMPANKPVVSDST 81          
BLAST of GR397950 vs. TrEMBL
Match: C6T245_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 3.827e-8
Identity = 30/50 (60.00%), Postives = 36/50 (72.00%), Query Frame = 3
Query:   54 MASRYESR-SKLTISTSPTSERGSVQTSLQKAQCLCSPTTHEGSFRCRLH 200
            MAS+ + + SKL +S  P S+ G+  TS  K QCLCSPTTHEGSFRCR H
Sbjct:    1 MASQSQVQMSKLRVSVIPESDSGNGTTSSPKGQCLCSPTTHEGSFRCRFH 50          
BLAST of GR397950 vs. TrEMBL
Match: B9ILL5_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_669299 PE=4 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 4.998e-8
Identity = 30/47 (63.83%), Postives = 34/47 (72.34%), Query Frame = 3
Query:   72 SRSKLTISTSPTSERG----SVQTSLQKAQCLCSPTTHEGSFRCRLH 200
            S  KL+ISTSP S  G    +V +S  K QCLCSPTTH+GSFRCRLH
Sbjct:    3 SHGKLSISTSPESGNGERSSAVASSSPKGQCLCSPTTHQGSFRCRLH 49          
BLAST of GR397950 vs. TAIR peptide
Match: AT1G67910.2 (| Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1). | chr1:25471534-25471809 REVERSE LENGTH=91)

HSP 1 Score: 49.2914 bits (116), Expect = 5.808e-7
Identity = 20/27 (74.07%), Postives = 22/27 (81.48%), Query Frame = 3
Query:  120 SVQTSLQKAQCLCSPTTHEGSFRCRLH 200
            S QTS+ K  CLCSPTTH GSFRCR+H
Sbjct:   34 SRQTSMTKTNCLCSPTTHPGSFRCRIH 60          
BLAST of GR397950 vs. TAIR peptide
Match: AT1G67910.1 (| Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1); Has 167 Blast hits to 167 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:25471534-25471809 REVERSE LENGTH=91)

HSP 1 Score: 49.2914 bits (116), Expect = 5.808e-7
Identity = 20/27 (74.07%), Postives = 22/27 (81.48%), Query Frame = 3
Query:  120 SVQTSLQKAQCLCSPTTHEGSFRCRLH 200
            S QTS+ K  CLCSPTTH GSFRCR+H
Sbjct:   34 SRQTSMTKTNCLCSPTTHPGSFRCRIH 60          
The following BLAST results are available for this feature:
BLAST of GR397950 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 3
Match NameE-valueIdentityDescription
C6SYN9_SOYBN2.244e-848.65Putative uncharacterized protein OS=Glycine max PE... [more]
C6T245_SOYBN3.827e-860.00Putative uncharacterized protein OS=Glycine max PE... [more]
B9ILL5_POPTR4.998e-863.83Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
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BLAST of GR397950 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT1G67910.25.808e-774.07| Symbols: | unknown protein; FUNCTIONS IN: molec... [more]
AT1G67910.15.808e-774.07| Symbols: | unknown protein; FUNCTIONS IN: molec... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 12..18
score
NoneNo IPR availableSEGsegsegcoord: 67..79
score

Properties
Property NameValue
Singlet in analysisCicer arietinum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GR397950 ID=GR397950; Name=GR397950; organism=Cicer arietinum; type=EST; length=339bp
GAATCAAATTGGAGCTTCAAAATTCAAATCGTGTCCTCCTCCTCATCATC
ATCATGGCATCTAGATATGAATCTCGAAGTAAACTCACAATTTCAACATC
ACCAACAAGTGAAAGGGGTAGTGTTCAAACATCTTTGCAAAAAGCTCAGT
GTTTGTGTTCTCCAACGACACATGAAGGTTCTTTCCGTTGTCGTTTACAT
CGTAGCTCATCAACCACTACTCCACGCTCAAATTCTTCGATAGCTGATAG
TAACGATAATAAGGCTGTCGTTTCATAGAATACGACATAGAAGCTGTTGT
GAGTACTACCGTTTCATATGTAACTTTATGAATCATTCG
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