ES560273
EST Overview
Libraries
Unigenes
This EST is part of the following unigenes:
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of ES560273 vs. SwissProt
Match: RPAC1_DICDI (DNA-directed RNA polymerases I and III subunit rpac1 OS=Dictyostelium discoideum GN=polr1c PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 6.409e-18 Identity = 44/96 (45.83%), Postives = 62/96 (64.58%), Query Frame = 2 Query: 8 EDVRDELADELVTKCPVNVFDIEDIGKGRRRATVVNPRACTLCRECIRGGKEWEDRVSLRRVKDHFIFTIESTGAIPPDVLFTQAVKILEDKCERV 295 + ++ + A++L+ KCP VFDIED G+ P CT+CRECIR E+E V + RV+DHFIF+IESTGA+ +F +A+KI +KC V Sbjct: 246 KSIKGDKANQLLEKCPKKVFDIEDSGQ----VVAARPLDCTMCRECIRD-PEFEQNVKIERVRDHFIFSIESTGALKSREIFQEAIKIFIEKCNIV 336
BLAST of ES560273 vs. SwissProt
Match: RPAC1_BOVIN (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Bos taurus GN=POLR1C PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 1.578e-16 Identity = 46/102 (45.10%), Postives = 66/102 (64.71%), Query Frame = 2 Query: 2 LMEDVRDELADELVTKCPVNVFDIEDIGKGRRRATVVNPRACTLCRECIRGGKEWEDRVSLRRVKDHFIFTIESTGAIPPDVLFTQAVKILEDKCERVITEL 307 L+E V E A+EL V ++++I +G++ A V NPR T RE R K + V L RV+DHFIF++ESTG +PPDVL ++A+K+L KC+R + EL Sbjct: 241 LLEPVEGEAAEELSRCFSPGVIEVQEI-QGKKVARVANPRLDTFSREVFRNEK-LKKVVRLARVRDHFIFSVESTGVLPPDVLVSEAIKVLMGKCQRFLDEL 340
BLAST of ES560273 vs. SwissProt
Match: RPAC1_HUMAN (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Homo sapiens GN=POLR1C PE=1 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 7.834e-16 Identity = 44/102 (43.14%), Postives = 65/102 (63.73%), Query Frame = 2 Query: 2 LMEDVRDELADELVTKCPVNVFDIEDIGKGRRRATVVNPRACTLCRECIRGGKEWEDRVSLRRVKDHFIFTIESTGAIPPDVLFTQAVKILEDKCERVITEL 307 L+E V E A+EL V +++++ +G++ A V NPR T RE R K + V L RV+DH+IF++ESTG +PPDVL ++A+K+L KC R + EL Sbjct: 241 LLEPVEGEAAEELSRCFSPGVIEVQEV-QGKKVARVANPRLDTFSREIFRNEK-LKKVVRLARVRDHYIFSVESTGVLPPDVLVSEAIKVLMGKCRRFLDEL 340
BLAST of ES560273 vs. SwissProt
Match: RPAC1_MOUSE (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Mus musculus GN=Polr1e PE=1 SV=2) HSP 1 Score: 80.8777 bits (198), Expect = 2.279e-15 Identity = 45/102 (44.12%), Postives = 64/102 (62.75%), Query Frame = 2 Query: 2 LMEDVRDELADELVTKCPVNVFDIEDIGKGRRRATVVNPRACTLCRECIRGGKEWEDRVSLRRVKDHFIFTIESTGAIPPDVLFTQAVKILEDKCERVITEL 307 L+E V E A+EL V ++E++ +G++ A V N R T RE R K + V L RV+DH+IF++ESTG +PPDVL ++A+KIL KC R + EL Sbjct: 241 LLEPVEGEAAEELSQCFSPGVIEVEEV-QGKKVARVANARLDTFSREIFRHEK-LKKAVRLARVRDHYIFSVESTGVLPPDVLVSEAIKILMGKCRRFLDEL 340
BLAST of ES560273 vs. SwissProt
Match: RPAC1_SCHPO (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Schizosaccharomyces pombe GN=rpc40 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 2.133e-13 Identity = 37/88 (42.05%), Postives = 60/88 (68.18%), Query Frame = 2 Query: 47 KC-PVNVFDIEDIGKGRRRATVVNPRACTLCRECIRGGKEWEDRVSLRRVKDHFIFTIESTGAIPPDVLFTQAVKILEDKCERVITEL 307 KC P V ++E+ G+++A V + R T+ REC+R E+ D+V L RV+DH++F++ESTG + PDVLF +++ +L+ KC V + L Sbjct: 256 KCFPKGVIELEEGPDGKKQARVADVRKDTVSRECLRH-PEFADKVQLGRVRDHYLFSVESTGIMKPDVLFIKSIAVLKSKCLAVKSSL 342
BLAST of ES560273 vs. SwissProt
Match: RPAC1_YEAST (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Saccharomyces cerevisiae GN=RPC40 PE=1 SV=1) HSP 1 Score: 58.9214 bits (141), Expect = 9.275e-9 Identity = 34/96 (35.42%), Postives = 58/96 (60.42%), Query Frame = 2 Query: 2 LMEDVRDELADELVTKCPVNVFDIEDIGKGRRRATVVNPRACTLCRECIRGGKEWEDRVSLRRVKDHFIFTIESTGAIPPDVLFTQAVKILEDKCE 289 +++ ++ E A P V I++ G A V + R T+ RE +R +E+ D+V L RV++HFIF +ES GA+ P+ +F ++V+IL++K E Sbjct: 235 ILQPIKGESARRFQKCFPPGVIGIDE---GSDEAYVKDARKDTVSREVLRY-EEFADKVKLGRVRNHFIFNVESAGAMTPEEIFFKSVRILKNKAE 326
BLAST of ES560273 vs. SwissProt
Match: RPB3_DICDI (DNA-directed RNA polymerase II subunit rpb3 OS=Dictyostelium discoideum GN=polr2c PE=3 SV=1) HSP 1 Score: 56.6102 bits (135), Expect = 4.603e-8 Identity = 28/95 (29.47%), Postives = 54/95 (56.84%), Query Frame = 2 Query: 5 MEDVRDELADELVTKCPVNVFDIEDIGKGRRRATVVNPRACTLCRECIRGGKEW--EDRVSLRRVKDHFIFTIESTGAIPPDVLFTQAVKILEDK 283 ++++ D+ +E V CP V+ + ++ T+ +P C C EC + + + D V L + +D FIFT+ES+GA+ P+ + A++I++ K Sbjct: 196 IDELTDQQKEEWVGSCPTKVYSYSP-HQSTQQVTIEDPLRCVYCLECKKKAESFGKPDLVHLEQKQDKFIFTVESSGALKPEDIVLYAIQIIKRK 289
BLAST of ES560273 vs. TrEMBL
Match: C6TAS0_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1) HSP 1 Score: 184.496 bits (467), Expect = 2.999e-45 Identity = 88/103 (85.44%), Postives = 95/103 (92.23%), Query Frame = 2 Query: 2 LMEDVRDELADELVTKCPVNVFDIEDIGKGRRRATVVNPRACTLCRECIRGGKEWEDRVSLRRVKDHFIFTIESTGAIPPDVLFTQAVKILEDKCERVITELS 310 L+E V DELA+EL KCPVNVFDIEDIGKG+RRA V PR CTLCRECIRGGKEWEDRVSLRRVK+HFIFTIESTGA+PP+VLFT+AVKILEDKCERVITELS Sbjct: 286 LLEAVEDELAEELKNKCPVNVFDIEDIGKGKRRAKVARPRDCTLCRECIRGGKEWEDRVSLRRVKNHFIFTIESTGALPPEVLFTEAVKILEDKCERVITELS 388
BLAST of ES560273 vs. TrEMBL
Match: B9S9W7_RICCO (DNA-directed RNA polymerase I/III subunits, putative OS=Ricinus communis GN=RCOM_0523110 PE=4 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 9.648e-44 Identity = 84/103 (81.55%), Postives = 95/103 (92.23%), Query Frame = 2 Query: 2 LMEDVRDELADELVTKCPVNVFDIEDIGKGRRRATVVNPRACTLCRECIRGGKEWEDRVSLRRVKDHFIFTIESTGAIPPDVLFTQAVKILEDKCERVITELS 310 L+ED+ DE+A+EL KCPVNVFDIEDIG G++RATV PRACTLCRECIRGG EW+ RVSLRRVKDHFIFTIESTGA+PP+VLFT+AVK+LEDKCERVITELS Sbjct: 273 LLEDIEDEIAEELTKKCPVNVFDIEDIGNGKKRATVARPRACTLCRECIRGG-EWDKRVSLRRVKDHFIFTIESTGALPPEVLFTEAVKVLEDKCERVITELS 374
BLAST of ES560273 vs. TrEMBL
Match: D7UAJ8_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_15.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00014713001 PE=4 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 5.478e-39 Identity = 75/103 (72.82%), Postives = 92/103 (89.32%), Query Frame = 2 Query: 2 LMEDVRDELADELVTKCPVNVFDIEDIGKGRRRATVVNPRACTLCRECIRGGKEWEDRVSLRRVKDHFIFTIESTGAIPPDVLFTQAVKILEDKCERVITELS 310 L++++ DE A+ELV KCPVNVFDIEDI KG+++ATV PRACTLCRECIRG +W+ V++RRVK+HFIFTIESTGA+PP+VLF +AVK+LEDKCERVITELS Sbjct: 271 LLQEIEDEKAEELVKKCPVNVFDIEDIAKGKKKATVARPRACTLCRECIRGD-DWDKHVAIRRVKNHFIFTIESTGALPPEVLFNEAVKVLEDKCERVITELS 372
BLAST of ES560273 vs. TrEMBL
Match: B9GFY9_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_550226 PE=4 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 5.128e-37 Identity = 73/103 (70.87%), Postives = 88/103 (85.44%), Query Frame = 2 Query: 2 LMEDVRDELADELVTKCPVNVFDIEDIGKGRRRATVVNPRACTLCRECIRGGKEWEDRVSLRRVKDHFIFTIESTGAIPPDVLFTQAVKILEDKCERVITELS 310 L+E+++ E A+EL+ KCP VFDIED G +++A V + RACTLCRECIRG +EWE RV+L RVKDHFIFTIESTGA+PP+VLFT+AVKILE KCERVITELS Sbjct: 288 LLENIKGEDAEELIRKCPSGVFDIEDTGNAKKKAIVADSRACTLCRECIRGDEEWEKRVALHRVKDHFIFTIESTGALPPEVLFTEAVKILEAKCERVITELS 390
BLAST of ES560273 vs. TrEMBL
Match: Q39216_ARATH (RNA polymerase subunit OS=Arabidopsis thaliana GN=F8A5.14 PE=2 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 7.404e-36 Identity = 72/103 (69.90%), Postives = 87/103 (84.47%), Query Frame = 2 Query: 2 LMEDVRDELADELVTKCPVNVFDIEDIGKGRRRATVVNPRACTLCRECIRGGKEWEDRVSLRRVKDHFIFTIESTGAIPPDVLFTQAVKILEDKCERVITELS 310 L+++ + A+ELV CP VFDIED+G+GR+RATV PR C+LCRECIR G EWED+V LRRVK+HFIFTIESTG+ PP+VLF +AVKILEDKCERVI+ELS Sbjct: 283 LLKEFEGKHAEELVKVCPKKVFDIEDMGQGRKRATVARPRDCSLCRECIRDGVEWEDQVDLRRVKNHFIFTIESTGSQPPEVLFNEAVKILEDKCERVISELS 385
BLAST of ES560273 vs. TrEMBL
Match: D7KWR8_ARALY (ATRPAC43 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_475268 PE=4 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 1.069e-34 Identity = 71/103 (68.93%), Postives = 85/103 (82.52%), Query Frame = 2 Query: 2 LMEDVRDELADELVTKCPVNVFDIEDIGKGRRRATVVNPRACTLCRECIRGGKEWEDRVSLRRVKDHFIFTIESTGAIPPDVLFTQAVKILEDKCERVITELS 310 L+++ + A+ELV CP VFDIED+G+GR+RATV PR C+LCRECIR G EW +V LRRVK+HFIFTIESTG+ PPDVLF +AVKILEDKCERVI+ELS Sbjct: 283 LLKEFEGKHAEELVKVCPKKVFDIEDMGQGRKRATVARPRDCSLCRECIREGVEWAKQVDLRRVKNHFIFTIESTGSQPPDVLFNEAVKILEDKCERVISELS 385
BLAST of ES560273 vs. TrEMBL
Match: C5XXF5_SORBI (Putative uncharacterized protein Sb04g006420 OS=Sorghum bicolor GN=Sb04g006420 PE=4 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 2.382e-34 Identity = 70/103 (67.96%), Postives = 87/103 (84.47%), Query Frame = 2 Query: 2 LMEDVRDELADELVTKCPVNVFDIEDIGKGRRRATVVNPRACTLCRECIRGGKEWEDRVSLRRVKDHFIFTIESTGAIPPDVLFTQAVKILEDKCERVITELS 310 +++D+ + A+ELV KCPVNVFDIED+G G +RA V PRACTLCREC+ G ++V LRRV+DHFIFTIESTGA+PP+VLFT+AVKILE+KCERVI+ELS Sbjct: 270 ILKDIEGDDAEELVKKCPVNVFDIEDLGNGGKRAVVAKPRACTLCRECVMGPNG--NQVELRRVRDHFIFTIESTGALPPEVLFTEAVKILEEKCERVISELS 370
BLAST of ES560273 vs. TrEMBL
Match: Q10MU2_ORYSJ (Os03g0295400 protein OS=Oryza sativa subsp. japonica GN=Os03g0295400 PE=4 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 1.001e-32 Identity = 68/108 (62.96%), Postives = 86/108 (79.63%), Query Frame = 2 Query: 2 LMEDVRDELADELVTKCPVNVFDIEDIGKGRRRATVVNPRACTLCRECIRGGK-----EWEDRVSLRRVKDHFIFTIESTGAIPPDVLFTQAVKILEDKCERVITELS 310 L E+++D A+ LV KCPVNVFDIED+G G +RA V PRACTLCR+C+ G ++V LRRV+DHFIFTIESTGA+PP++LFT+AV+ILE+KCERVI+ELS Sbjct: 272 LREEIKDADAEMLVAKCPVNVFDIEDLGNGEKRAVVARPRACTLCRQCVMGPTGEVMGPTVEQVELRRVRDHFIFTIESTGALPPEMLFTEAVRILEEKCERVISELS 379
BLAST of ES560273 vs. TrEMBL
Match: A9T5P0_PHYPA (Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_107528 PE=4 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 1.307e-32 Identity = 68/103 (66.02%), Postives = 84/103 (81.55%), Query Frame = 2 Query: 2 LMEDVRDELADELVTKCPVNVFDIEDIGKGRRRATVVNPRACTLCRECIRGGKEWEDRVSLRRVKDHFIFTIESTGAIPPDVLFTQAVKILEDKCERVITELS 310 LMED++ +LA+ELV KCP VFDIED+G ++ A V PR CTLCREC+RG +W+ RV L RVKDHFIFTIESTGA+ P+VLFT+A+KIL +KC R+ITELS Sbjct: 260 LMEDIQGKLAEELVQKCPTGVFDIEDVGTVKK-AIVARPRNCTLCRECVRG-TDWDKRVQLTRVKDHFIFTIESTGALRPEVLFTEAIKILNEKCHRIITELS 360
BLAST of ES560273 vs. TrEMBL
Match: B4FAR4_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 1.106e-31 Identity = 67/103 (65.05%), Postives = 83/103 (80.58%), Query Frame = 2 Query: 2 LMEDVRDELADELVTKCPVNVFDIEDIGKGRRRATVVNPRACTLCRECIRGGKEWEDRVSLRRVKDHFIFTIESTGAIPPDVLFTQAVKILEDKCERVITELS 310 ++++V A+ELV KC VNVFDIED+ G +RA V PRACTLCREC+ G E +V LRRV+DHFIFTIESTG++PP+VLFT+AVKILE+KC RVI+ELS Sbjct: 272 ILKEVEGPQAEELVNKCRVNVFDIEDLANGGKRAVVARPRACTLCRECVMGPNE--KQVELRRVRDHFIFTIESTGSMPPEVLFTEAVKILEEKCARVISELS 372
BLAST of ES560273 vs. TAIR peptide
Match: AT1G60620.1 (| Symbols: ATRPAC43, RPAC43 | RNA polymerase I subunit 43 | chr1:22331225-22333370 FORWARD LENGTH=385) HSP 1 Score: 153.295 bits (386), Expect = 2.984e-38 Identity = 72/103 (69.90%), Postives = 87/103 (84.47%), Query Frame = 2 Query: 2 LMEDVRDELADELVTKCPVNVFDIEDIGKGRRRATVVNPRACTLCRECIRGGKEWEDRVSLRRVKDHFIFTIESTGAIPPDVLFTQAVKILEDKCERVITELS 310 L+++ + A+ELV CP VFDIED+G+GR+RATV PR C+LCRECIR G EWED+V LRRVK+HFIFTIESTG+ PP+VLF +AVKILEDKCERVI+ELS Sbjct: 283 LLKEFEGKHAEELVKVCPKKVFDIEDMGQGRKRATVARPRDCSLCRECIRDGVEWEDQVDLRRVKNHFIFTIESTGSQPPEVLFNEAVKILEDKCERVISELS 385
BLAST of ES560273 vs. TAIR peptide
Match: AT1G60850.1 (| Symbols: ATRPAC42, AAC42 | DNA-directed RNA polymerase family protein | chr1:22398078-22400155 REVERSE LENGTH=375) HSP 1 Score: 129.798 bits (325), Expect = 3.534e-31 Identity = 62/98 (63.27%), Postives = 76/98 (77.55%), Query Frame = 2 Query: 2 LMEDVRDELADELVTKCPVNVFDIEDIGKGRRRATVVNPRACTLCRECIRGGKEWEDRVSLRRVKDHFIFTIESTGAIPPDVLFTQAVKILEDKCERV 295 L +V DELA+ LV CP NVFDIED+GKG++RATV PR CTLC+EC+R + D V L VK+HFIF IESTG++PP+VLFT+AVKILE KCE + Sbjct: 276 LRGEVEDELAERLVNVCPQNVFDIEDMGKGKKRATVAQPRKCTLCKECVR-DDDLVDHVDLGSVKNHFIFNIESTGSLPPEVLFTEAVKILEAKCEAI 372
BLAST of ES560273 vs. TAIR peptide
Match: AT1G60850.2 (| Symbols: ATRPAC42, AAC42 | DNA-directed RNA polymerase family protein | chr1:22398078-22400155 REVERSE LENGTH=375) HSP 1 Score: 129.798 bits (325), Expect = 3.534e-31 Identity = 62/98 (63.27%), Postives = 76/98 (77.55%), Query Frame = 2 Query: 2 LMEDVRDELADELVTKCPVNVFDIEDIGKGRRRATVVNPRACTLCRECIRGGKEWEDRVSLRRVKDHFIFTIESTGAIPPDVLFTQAVKILEDKCERV 295 L +V DELA+ LV CP NVFDIED+GKG++RATV PR CTLC+EC+R + D V L VK+HFIF IESTG++PP+VLFT+AVKILE KCE + Sbjct: 276 LRGEVEDELAERLVNVCPQNVFDIEDMGKGKKRATVAQPRKCTLCKECVR-DDDLVDHVDLGSVKNHFIFNIESTGSLPPEVLFTEAVKILEAKCEAI 372
BLAST of ES560273 vs. TAIR peptide
Match: AT2G15430.1 (| Symbols: RBP36A, RPB35.5A, NRPB3, NRPD3, NRPE3A | DNA-directed RNA polymerase family protein | chr2:6733661-6735482 FORWARD LENGTH=319) HSP 1 Score: 50.0618 bits (118), Expect = 3.558e-7 Identity = 33/102 (32.35%), Postives = 51/102 (50.00%), Query Frame = 2 Query: 8 EDVRDELADE----LVTKCPVNVFDIEDIGKGRRRATVVNPRACTLCRECIRGGKEW--EDRVSLRRVKDHFIFTIESTGAIPPDVLFTQAVKILEDKCERV 295 ED+ D L+DE L+ P VF ++ + R+ VV+P A T E I+ + + + D FIFT+ESTGA+ L A+ +L+ K + V Sbjct: 198 EDMMDTLSDEEKIDLIESSPTKVFGMDPV---TRQVVVVDPEAYTYDEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNAIDLLKQKLDAV 296 The following BLAST results are available for this feature:
BLAST of ES560273 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot) Total hits: 7
BLAST of ES560273 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl) Total hits: 10
BLAST of ES560273 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide) Total hits: 4
InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >ES560273 ID=ES560273; Name=ES560273; organism=Cicer arietinum; type=EST; length=363bpback to top Annotated Terms
The
following terms have been associated with
this EST:
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