GR398226

BLAST of GR398226 vs. SwissProt
Match: RNHX1_ARATH (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 1.233e-12
Identity = 23/74 (31.08%), Postives = 43/74 (58.11%), Query Frame = 1

Query:  121 VITGRNEKHSYAFIVDEVRRKVSGWKSNSLSMVGRIT-------SLSNYVMQYIVIPMSICDKVERL*NNFIWG 321
            V+  R  K ++  I++ V  ++SGW+  +LS  GR+T       S+  + M  I++P SI +++++L   F+WG
Sbjct:    3 VLQKRINKDTFGEILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQSILNRLDQLSRTFLWG 76          

HSP 2 Score: 45.4394 bits (106), Expect = 1.233e-12
Identity = 19/60 (31.67%), Postives = 36/60 (60.00%), Query Frame = 2

Query:  311 LFGATTNVKRCHLISRSTICKSKEDEGLGFRNLRSVNISYMMKLGLDAMPKPNAFWVRIV 490
            L+G+T   K+ HL+  S +C  K++ GLG R  +S+N + + K+G   + + N+ W  ++
Sbjct:   74 LWGSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSLWTLVL 133          

BLAST of GR398226 vs. TrEMBL
Match: O82276_ARATH (Putative non-LTR retroelement reverse transcriptase OS=Arabidopsis thaliana GN=At2g31080 PE=2 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 1.897e-14
Identity = 28/85 (32.94%), Postives = 49/85 (57.65%), Query Frame = 1

Query:   88 TIDLRKYSRVYVITGRNEKHSYAFIVDEVRRKVSGWKSNSLSMVGRIT-------SLSNYVMQYIVIPMSICDKVERL*NNFIWG 321
            T +L KY  + ++  R  K ++  +++ V  +++GWK  SLS+ GRIT       S+  +VM  I++P+S  D ++R    F+WG
Sbjct:  607 TKELGKYLGMPILQKRMNKETFGEVLERVSARLAGWKGRSLSLAGRITLTKAVLSSIPVHVMSAILLPVSTLDTLDRYSRTFLWG 691          

HSP 2 Score: 46.9802 bits (110), Expect = 1.897e-14
Identity = 21/60 (35.00%), Postives = 35/60 (58.33%), Query Frame = 2

Query:  311 LFGATTNVKRCHLISRSTICKSKEDEGLGFRNLRSVNISYMMKLGLDAMPKPNAFWVRIV 490
            L+G+T   K+ HL+S   ICK K + G+G R+ R +N + + K+G   +    + W R+V
Sbjct:  689 LWGSTMEKKKQHLLSWRKICKPKAEGGIGLRSARDMNKALVAKVGWRLLQDKESLWARVV 748          

BLAST of GR398226 vs. TrEMBL
Match: Q2HX35_IPOBA (LINE-type retrotransposon LIb DNA, complete sequence, Insertion at the S11 site OS=Ipomoea batatas PE=4 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 4.121e-14
Identity = 24/84 (28.57%), Postives = 53/84 (63.10%), Query Frame = 1

Query:   97 LRKYSRVYVITGRNEKHSYAFIVDEVRRKVSGWKSNSLSMVGR-------ITSLSNYVMQYIVIPMSICDKVERL*NNFIWGYN 327
            L  Y  + ++  R  ++++  ++D++R K+S WK++SL+M GR       + ++  Y MQ + +P+S C+++++   NF+WG++
Sbjct: 1283 LGTYLGIPMLKERVSRNTFNAVIDKMRTKLSSWKASSLNMAGRRVLVQASLATVPTYTMQVMALPVSTCNEIDKTCRNFLWGHD 1366          

HSP 2 Score: 42.743 bits (99), Expect = 4.121e-14
Identity = 17/60 (28.33%), Postives = 33/60 (55.00%), Query Frame = 2

Query:  311 LFGATTNVKRCHLISRSTICKSKEDEGLGFRNLRSVNISYMMKLGLDAMPKPNAFWVRIV 490
            L+G  TN ++ H ++ + ICK + + GLG R  R  N +++ K+        +  WV+++
Sbjct: 1362 LWGHDTNTRKLHSVNWAEICKPRNEGGLGLRMARDFNRAFLTKMAWQIFSNIDKLWVKVL 1421          

BLAST of GR398226 vs. TrEMBL
Match: Q2HX37_IPOBA (LINE-type retrotransposon LIb DNA, complete sequence, Insertion at the S14 site OS=Ipomoea batatas PE=4 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 4.150e-14
Identity = 24/84 (28.57%), Postives = 53/84 (63.10%), Query Frame = 1

Query:   97 LRKYSRVYVITGRNEKHSYAFIVDEVRRKVSGWKSNSLSMVGR-------ITSLSNYVMQYIVIPMSICDKVERL*NNFIWGYN 327
            L  Y  + ++  R  ++++  ++D++R K+S WK++SL+M GR       + ++  Y MQ + +P+S C+++++   NF+WG++
Sbjct:  751 LGTYLGIPMLKERVSRNTFNAVIDKMRTKLSSWKASSLNMAGRRVLVQASLATVPTYTMQVMALPVSTCNEIDKTCRNFLWGHD 834          

HSP 2 Score: 42.743 bits (99), Expect = 4.150e-14
Identity = 17/60 (28.33%), Postives = 33/60 (55.00%), Query Frame = 2

Query:  311 LFGATTNVKRCHLISRSTICKSKEDEGLGFRNLRSVNISYMMKLGLDAMPKPNAFWVRIV 490
            L+G  TN ++ H ++ + ICK + + GLG R  R  N +++ K+        +  WV+++
Sbjct:  830 LWGHDTNTRKLHSVNWAEICKPRNEGGLGLRMARDFNRAFLTKMAWQIFSNIDKLWVKVL 889          

BLAST of GR398226 vs. TrEMBL
Match: Q2HX34_IPOBA (LINE-type retrotransposon LIb DNA, complete sequence, Insertion at the SCL6 site OS=Ipomoea batatas PE=4 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 4.150e-14
Identity = 24/84 (28.57%), Postives = 53/84 (63.10%), Query Frame = 1

Query:   97 LRKYSRVYVITGRNEKHSYAFIVDEVRRKVSGWKSNSLSMVGR-------ITSLSNYVMQYIVIPMSICDKVERL*NNFIWGYN 327
            L  Y  + ++  R  ++++  ++D++R K+S WK++SL+M GR       + ++  Y MQ + +P+S C+++++   NF+WG++
Sbjct:  751 LGTYLGIPMLKERVSRNTFNAVIDKMRTKLSSWKASSLNMAGRRVLVQASLATVPTYTMQVMALPVSTCNEIDKTCRNFLWGHD 834          

HSP 2 Score: 42.743 bits (99), Expect = 4.150e-14
Identity = 17/60 (28.33%), Postives = 33/60 (55.00%), Query Frame = 2

Query:  311 LFGATTNVKRCHLISRSTICKSKEDEGLGFRNLRSVNISYMMKLGLDAMPKPNAFWVRIV 490
            L+G  TN ++ H ++ + ICK + + GLG R  R  N +++ K+        +  WV+++
Sbjct:  830 LWGHDTNTRKLHSVNWAEICKPRNEGGLGLRMARDFNRAFLTKMAWQIFSNIDKLWVKVL 889          

BLAST of GR398226 vs. TrEMBL
Match: O23410_ARATH (Reverse transcriptase like protein OS=Arabidopsis thaliana GN=dl3835c PE=4 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 7.442e-13
Identity = 29/85 (34.12%), Postives = 52/85 (61.18%), Query Frame = 1

Query:   88 TIDLRKYSRVYVITGRNEKHSYAFIVDEVRRKVSGWKSNSLSMVGRIT-------SLSNYVMQYIVIPMSICDKVERL*NNFIWG 321
            T +L KY  + V+  R  K ++  +++ V  ++SGWKS SLS+ GRIT       S+  + M  I++P S+ ++++++  NF+WG
Sbjct:  542 TRELGKYLGMPVLQKRINKDTFGEVLERVSSRLSGWKSRSLSLAGRITLTKAVLMSIPIHTMSSILLPASLLEQLDKVSRNFLWG 626          

HSP 2 Score: 39.2762 bits (90), Expect = 7.442e-13
Identity = 17/60 (28.33%), Postives = 33/60 (55.00%), Query Frame = 2

Query:  311 LFGATTNVKRCHLISRSTICKSKEDEGLGFRNLRSVNISYMMKLGLDAMPKPNAFWVRIV 490
            L+G+T   ++ HL+S   +C+ K   GLG R  + +N + + K+G   +    + W R++
Sbjct:  624 LWGSTVEKRKQHLLSWKKVCRPKAAGGLGLRASKDMNRALLAKVGWRLLNDKVSLWARVL 683          

BLAST of GR398226 vs. TrEMBL
Match: A5C0F9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016970 PE=4 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 1.739e-11
Identity = 24/96 (25.00%), Postives = 56/96 (58.33%), Query Frame = 1

Query:   58 DSSNNILNIET-IDLRKYSRVYVITGRNEKHSYAFIVDEVRRKVSGWKSNSLSMVGRIT-------SLSNYVMQYIVIPMSICDKVERL*NNFIWG 321
            D  +NIL + T ++  +Y  +  + G++++  + F+ D + R++ GW+S  LS  G+         ++ +Y M   ++P+S+ ++++++ N+F WG
Sbjct:  134 DFISNILGVSTPLNTGRYLGLLSLIGKSKRVVFGFLRDRLWRRLQGWQSKLLSQAGKKILIKVVGQAIPSYCMSTFLLPISLSEELQKMMNSFWWG 229          

HSP 2 Score: 42.743 bits (99), Expect = 1.739e-11
Identity = 19/52 (36.54%), Postives = 33/52 (63.46%), Query Frame = 2

Query:  335 KRCHLISRSTICKSKEDEGLGFRNLRSVNISYMMKLGLDAMPKPNAFWVRIV 490
            +R + +S   +C  KE+ GLGFRNLR  N++ + K G + + KP++   R++
Sbjct:  236 RRINWLSWDKLCLRKEEGGLGFRNLRDFNLAMLGKQGWNLITKPDSLIARLL 287          

BLAST of GR398226 vs. TrEMBL
Match: Q9XE45_ARATH (Putative non-LTR retrolelement reverse transcriptase OS=Arabidopsis thaliana GN=At2g07650 PE=2 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 3.770e-11
Identity = 25/85 (29.41%), Postives = 48/85 (56.47%), Query Frame = 1

Query:   88 TIDLRKYSRVYVITGRNEKHSYAFIVDEVRRKVSGWKSNSLSMVGRIT-------SLSNYVMQYIVIPMSICDKVERL*NNFIWG 321
            T +L KY  + V+  R  K ++  I++++  +++GWK   LS+ GR+T       S+  + M  I +P S  D ++++  +F+WG
Sbjct:  269 TRELGKYLGMPVLQRRINKDTFGDILEKLTTRLAGWKGRFLSLAGRVTLTKAVLSSIPVHTMSTIALPKSTLDGLDKVSRSFLWG 353          

HSP 2 Score: 42.3578 bits (98), Expect = 3.770e-11
Identity = 18/60 (30.00%), Postives = 35/60 (58.33%), Query Frame = 2

Query:  311 LFGATTNVKRCHLISRSTICKSKEDEGLGFRNLRSVNISYMMKLGLDAMPKPNAFWVRIV 490
            L+G++   ++ HLIS   +CK + + GLG R  + +N + + K+G   +   ++ W RI+
Sbjct:  351 LWGSSVTQRKQHLISWKRVCKPRSEGGLGIRKAQDMNKALLSKVGWRLIQDYHSLWARIM 410          

BLAST of GR398226 vs. TrEMBL
Match: B2BXY8_9BRAS (Non-LTR retrotransposon transposase OS=Arabidopsis cebennensis PE=4 SV=1)

HSP 1 Score: 48.1358 bits (113), Expect = 1.799e-10
Identity = 26/85 (30.59%), Postives = 45/85 (52.94%), Query Frame = 1

Query:   88 TIDLRKYSRVYVITGRNEKHSYAFIVDEVRRKVSGWKSNSLSMVGRIT-------SLSNYVMQYIVIPMSICDKVERL*NNFIWG 321
            T +L KY  + V+  R  K ++  I+  V  +++GWK   LS+ GR+T       S+  + M  I +P +  D  +R+  +F+WG
Sbjct:  199 TKELGKYLGMPVLQKRINKDTFGEILLRVSSRLAGWKGRMLSLAGRLTLTKSVLSSIPIHTMSTIALPKATLDGFDRISKSFVWG 283          

HSP 2 Score: 41.5874 bits (96), Expect = 1.799e-10
Identity = 17/60 (28.33%), Postives = 38/60 (63.33%), Query Frame = 2

Query:  311 LFGATTNVKRCHLISRSTICKSKEDEGLGFRNLRSVNISYMMKLGLDAMPKPNAFWVRIV 490
            ++G++T  K+ HL++ + I  +K+  GLG R+ R++N + + K+G   +   ++ W R++
Sbjct:  281 VWGSSTEKKKQHLLAWNKIYCTKQAGGLGIRSSRAMNTALLAKIGWRLLQDKSSLWARVI 340          

BLAST of GR398226 vs. TrEMBL
Match: Q2HVE2_MEDTR (RNA-directed DNA polymerase (Reverse transcriptase); Polynucleotidyl transferase, Ribonuclease H fold OS=Medicago truncatula GN=MtrDRAFT_AC148918g30v2 PE=4 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 1.505e-9
Identity = 31/82 (37.80%), Postives = 48/82 (58.54%), Query Frame = 1

Query:   97 LRKYSRVYVITGRNEKHSYAFIVDEVRRKVSGWKSNSLSMVGRIT-------SLSNYVMQYIVIPMSICDKVERL*NNFIWG 321
            L KY    +  GR  +  +  I+++++ K+SGWK   LS+ GRIT       S+  Y MQY  IP +ICD++E++   F+WG
Sbjct:  177 LGKYLGANITPGRTSRGHFNHIINKIQNKLSGWKQQCLSLAGRITLSKFVISSIPYYHMQYAKIPKTICDEIEKIQRGFVWG 258          

BLAST of GR398226 vs. TrEMBL
Match: A2Q2Z7_MEDTR (Contains similarity to reverse trancriptase , related OS=Medicago truncatula GN=MtrDRAFT_AC153128g16v2 PE=4 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 5.439e-9
Identity = 23/82 (28.05%), Postives = 42/82 (51.22%), Query Frame = 1

Query:   97 LRKYSRVYVITGRNEKHSYAFIVDEVRRKVSGWKSNSLSMVGR-------ITSLSNYVMQYIVIPMSICDKVERL*NNFIWG 321
            ++KY  +    GR+++  + FI++ + +K  GWK   LS  GR         ++  Y M   ++P  +C K+E+   +F WG
Sbjct:   27 IQKYLGMPTQFGRSKEQDFHFIMERIWKKHKGWKKKCLSFEGRGVLIKAVAQAIPTYYMSCFMLPKGLCTKIEKAICSFWWG 108          

HSP 2 Score: 36.965 bits (84), Expect = 5.439e-9
Identity = 17/53 (32.08%), Postives = 28/53 (52.83%), Query Frame = 2

Query:  314 FGATTNVKRCHLISRSTICKSKEDEGLGFRNLRSVNISYMMKLGLDAMPKPNA 472
            +G T   K+ H +S+  + +SK   GLGF+ LR  N++ + K        PN+
Sbjct:  107 WGTTDKNKKMHWVSKKKLFRSKHSGGLGFKTLRDFNLAMLAKKVRRFYTNPNS 159