GR398226
EST Overview
Libraries
Unigenes
This EST is part of the following unigenes:
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of GR398226 vs. SwissProt
Match: RNHX1_ARATH (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1) HSP 1 Score: 47.7506 bits (112), Expect = 1.233e-12 Identity = 23/74 (31.08%), Postives = 43/74 (58.11%), Query Frame = 1 Query: 121 VITGRNEKHSYAFIVDEVRRKVSGWKSNSLSMVGRIT-------SLSNYVMQYIVIPMSICDKVERL*NNFIWG 321 V+ R K ++ I++ V ++SGW+ +LS GR+T S+ + M I++P SI +++++L F+WG Sbjct: 3 VLQKRINKDTFGEILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQSILNRLDQLSRTFLWG 76 HSP 2 Score: 45.4394 bits (106), Expect = 1.233e-12 Identity = 19/60 (31.67%), Postives = 36/60 (60.00%), Query Frame = 2 Query: 311 LFGATTNVKRCHLISRSTICKSKEDEGLGFRNLRSVNISYMMKLGLDAMPKPNAFWVRIV 490 L+G+T K+ HL+ S +C K++ GLG R +S+N + + K+G + + N+ W ++ Sbjct: 74 LWGSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSLWTLVL 133
BLAST of GR398226 vs. TrEMBL
Match: O82276_ARATH (Putative non-LTR retroelement reverse transcriptase OS=Arabidopsis thaliana GN=At2g31080 PE=2 SV=1) HSP 1 Score: 56.225 bits (134), Expect = 1.897e-14 Identity = 28/85 (32.94%), Postives = 49/85 (57.65%), Query Frame = 1 Query: 88 TIDLRKYSRVYVITGRNEKHSYAFIVDEVRRKVSGWKSNSLSMVGRIT-------SLSNYVMQYIVIPMSICDKVERL*NNFIWG 321 T +L KY + ++ R K ++ +++ V +++GWK SLS+ GRIT S+ +VM I++P+S D ++R F+WG Sbjct: 607 TKELGKYLGMPILQKRMNKETFGEVLERVSARLAGWKGRSLSLAGRITLTKAVLSSIPVHVMSAILLPVSTLDTLDRYSRTFLWG 691 HSP 2 Score: 46.9802 bits (110), Expect = 1.897e-14 Identity = 21/60 (35.00%), Postives = 35/60 (58.33%), Query Frame = 2 Query: 311 LFGATTNVKRCHLISRSTICKSKEDEGLGFRNLRSVNISYMMKLGLDAMPKPNAFWVRIV 490 L+G+T K+ HL+S ICK K + G+G R+ R +N + + K+G + + W R+V Sbjct: 689 LWGSTMEKKKQHLLSWRKICKPKAEGGIGLRSARDMNKALVAKVGWRLLQDKESLWARVV 748
BLAST of GR398226 vs. TrEMBL
Match: Q2HX35_IPOBA (LINE-type retrotransposon LIb DNA, complete sequence, Insertion at the S11 site OS=Ipomoea batatas PE=4 SV=1) HSP 1 Score: 59.3066 bits (142), Expect = 4.121e-14 Identity = 24/84 (28.57%), Postives = 53/84 (63.10%), Query Frame = 1 Query: 97 LRKYSRVYVITGRNEKHSYAFIVDEVRRKVSGWKSNSLSMVGR-------ITSLSNYVMQYIVIPMSICDKVERL*NNFIWGYN 327 L Y + ++ R ++++ ++D++R K+S WK++SL+M GR + ++ Y MQ + +P+S C+++++ NF+WG++ Sbjct: 1283 LGTYLGIPMLKERVSRNTFNAVIDKMRTKLSSWKASSLNMAGRRVLVQASLATVPTYTMQVMALPVSTCNEIDKTCRNFLWGHD 1366 HSP 2 Score: 42.743 bits (99), Expect = 4.121e-14 Identity = 17/60 (28.33%), Postives = 33/60 (55.00%), Query Frame = 2 Query: 311 LFGATTNVKRCHLISRSTICKSKEDEGLGFRNLRSVNISYMMKLGLDAMPKPNAFWVRIV 490 L+G TN ++ H ++ + ICK + + GLG R R N +++ K+ + WV+++ Sbjct: 1362 LWGHDTNTRKLHSVNWAEICKPRNEGGLGLRMARDFNRAFLTKMAWQIFSNIDKLWVKVL 1421
BLAST of GR398226 vs. TrEMBL
Match: Q2HX37_IPOBA (LINE-type retrotransposon LIb DNA, complete sequence, Insertion at the S14 site OS=Ipomoea batatas PE=4 SV=1) HSP 1 Score: 59.3066 bits (142), Expect = 4.150e-14 Identity = 24/84 (28.57%), Postives = 53/84 (63.10%), Query Frame = 1 Query: 97 LRKYSRVYVITGRNEKHSYAFIVDEVRRKVSGWKSNSLSMVGR-------ITSLSNYVMQYIVIPMSICDKVERL*NNFIWGYN 327 L Y + ++ R ++++ ++D++R K+S WK++SL+M GR + ++ Y MQ + +P+S C+++++ NF+WG++ Sbjct: 751 LGTYLGIPMLKERVSRNTFNAVIDKMRTKLSSWKASSLNMAGRRVLVQASLATVPTYTMQVMALPVSTCNEIDKTCRNFLWGHD 834 HSP 2 Score: 42.743 bits (99), Expect = 4.150e-14 Identity = 17/60 (28.33%), Postives = 33/60 (55.00%), Query Frame = 2 Query: 311 LFGATTNVKRCHLISRSTICKSKEDEGLGFRNLRSVNISYMMKLGLDAMPKPNAFWVRIV 490 L+G TN ++ H ++ + ICK + + GLG R R N +++ K+ + WV+++ Sbjct: 830 LWGHDTNTRKLHSVNWAEICKPRNEGGLGLRMARDFNRAFLTKMAWQIFSNIDKLWVKVL 889
BLAST of GR398226 vs. TrEMBL
Match: Q2HX34_IPOBA (LINE-type retrotransposon LIb DNA, complete sequence, Insertion at the SCL6 site OS=Ipomoea batatas PE=4 SV=1) HSP 1 Score: 59.3066 bits (142), Expect = 4.150e-14 Identity = 24/84 (28.57%), Postives = 53/84 (63.10%), Query Frame = 1 Query: 97 LRKYSRVYVITGRNEKHSYAFIVDEVRRKVSGWKSNSLSMVGR-------ITSLSNYVMQYIVIPMSICDKVERL*NNFIWGYN 327 L Y + ++ R ++++ ++D++R K+S WK++SL+M GR + ++ Y MQ + +P+S C+++++ NF+WG++ Sbjct: 751 LGTYLGIPMLKERVSRNTFNAVIDKMRTKLSSWKASSLNMAGRRVLVQASLATVPTYTMQVMALPVSTCNEIDKTCRNFLWGHD 834 HSP 2 Score: 42.743 bits (99), Expect = 4.150e-14 Identity = 17/60 (28.33%), Postives = 33/60 (55.00%), Query Frame = 2 Query: 311 LFGATTNVKRCHLISRSTICKSKEDEGLGFRNLRSVNISYMMKLGLDAMPKPNAFWVRIV 490 L+G TN ++ H ++ + ICK + + GLG R R N +++ K+ + WV+++ Sbjct: 830 LWGHDTNTRKLHSVNWAEICKPRNEGGLGLRMARDFNRAFLTKMAWQIFSNIDKLWVKVL 889
BLAST of GR398226 vs. TrEMBL
Match: O23410_ARATH (Reverse transcriptase like protein OS=Arabidopsis thaliana GN=dl3835c PE=4 SV=1) HSP 1 Score: 58.5362 bits (140), Expect = 7.442e-13 Identity = 29/85 (34.12%), Postives = 52/85 (61.18%), Query Frame = 1 Query: 88 TIDLRKYSRVYVITGRNEKHSYAFIVDEVRRKVSGWKSNSLSMVGRIT-------SLSNYVMQYIVIPMSICDKVERL*NNFIWG 321 T +L KY + V+ R K ++ +++ V ++SGWKS SLS+ GRIT S+ + M I++P S+ ++++++ NF+WG Sbjct: 542 TRELGKYLGMPVLQKRINKDTFGEVLERVSSRLSGWKSRSLSLAGRITLTKAVLMSIPIHTMSSILLPASLLEQLDKVSRNFLWG 626 HSP 2 Score: 39.2762 bits (90), Expect = 7.442e-13 Identity = 17/60 (28.33%), Postives = 33/60 (55.00%), Query Frame = 2 Query: 311 LFGATTNVKRCHLISRSTICKSKEDEGLGFRNLRSVNISYMMKLGLDAMPKPNAFWVRIV 490 L+G+T ++ HL+S +C+ K GLG R + +N + + K+G + + W R++ Sbjct: 624 LWGSTVEKRKQHLLSWKKVCRPKAAGGLGLRASKDMNRALLAKVGWRLLNDKVSLWARVL 683
BLAST of GR398226 vs. TrEMBL
Match: A5C0F9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016970 PE=4 SV=1) HSP 1 Score: 50.447 bits (119), Expect = 1.739e-11 Identity = 24/96 (25.00%), Postives = 56/96 (58.33%), Query Frame = 1 Query: 58 DSSNNILNIET-IDLRKYSRVYVITGRNEKHSYAFIVDEVRRKVSGWKSNSLSMVGRIT-------SLSNYVMQYIVIPMSICDKVERL*NNFIWG 321 D +NIL + T ++ +Y + + G++++ + F+ D + R++ GW+S LS G+ ++ +Y M ++P+S+ ++++++ N+F WG Sbjct: 134 DFISNILGVSTPLNTGRYLGLLSLIGKSKRVVFGFLRDRLWRRLQGWQSKLLSQAGKKILIKVVGQAIPSYCMSTFLLPISLSEELQKMMNSFWWG 229 HSP 2 Score: 42.743 bits (99), Expect = 1.739e-11 Identity = 19/52 (36.54%), Postives = 33/52 (63.46%), Query Frame = 2 Query: 335 KRCHLISRSTICKSKEDEGLGFRNLRSVNISYMMKLGLDAMPKPNAFWVRIV 490 +R + +S +C KE+ GLGFRNLR N++ + K G + + KP++ R++ Sbjct: 236 RRINWLSWDKLCLRKEEGGLGFRNLRDFNLAMLGKQGWNLITKPDSLIARLL 287
BLAST of GR398226 vs. TrEMBL
Match: Q9XE45_ARATH (Putative non-LTR retrolelement reverse transcriptase OS=Arabidopsis thaliana GN=At2g07650 PE=2 SV=1) HSP 1 Score: 49.6766 bits (117), Expect = 3.770e-11 Identity = 25/85 (29.41%), Postives = 48/85 (56.47%), Query Frame = 1 Query: 88 TIDLRKYSRVYVITGRNEKHSYAFIVDEVRRKVSGWKSNSLSMVGRIT-------SLSNYVMQYIVIPMSICDKVERL*NNFIWG 321 T +L KY + V+ R K ++ I++++ +++GWK LS+ GR+T S+ + M I +P S D ++++ +F+WG Sbjct: 269 TRELGKYLGMPVLQRRINKDTFGDILEKLTTRLAGWKGRFLSLAGRVTLTKAVLSSIPVHTMSTIALPKSTLDGLDKVSRSFLWG 353 HSP 2 Score: 42.3578 bits (98), Expect = 3.770e-11 Identity = 18/60 (30.00%), Postives = 35/60 (58.33%), Query Frame = 2 Query: 311 LFGATTNVKRCHLISRSTICKSKEDEGLGFRNLRSVNISYMMKLGLDAMPKPNAFWVRIV 490 L+G++ ++ HLIS +CK + + GLG R + +N + + K+G + ++ W RI+ Sbjct: 351 LWGSSVTQRKQHLISWKRVCKPRSEGGLGIRKAQDMNKALLSKVGWRLIQDYHSLWARIM 410
BLAST of GR398226 vs. TrEMBL
Match: B2BXY8_9BRAS (Non-LTR retrotransposon transposase OS=Arabidopsis cebennensis PE=4 SV=1) HSP 1 Score: 48.1358 bits (113), Expect = 1.799e-10 Identity = 26/85 (30.59%), Postives = 45/85 (52.94%), Query Frame = 1 Query: 88 TIDLRKYSRVYVITGRNEKHSYAFIVDEVRRKVSGWKSNSLSMVGRIT-------SLSNYVMQYIVIPMSICDKVERL*NNFIWG 321 T +L KY + V+ R K ++ I+ V +++GWK LS+ GR+T S+ + M I +P + D +R+ +F+WG Sbjct: 199 TKELGKYLGMPVLQKRINKDTFGEILLRVSSRLAGWKGRMLSLAGRLTLTKSVLSSIPIHTMSTIALPKATLDGFDRISKSFVWG 283 HSP 2 Score: 41.5874 bits (96), Expect = 1.799e-10 Identity = 17/60 (28.33%), Postives = 38/60 (63.33%), Query Frame = 2 Query: 311 LFGATTNVKRCHLISRSTICKSKEDEGLGFRNLRSVNISYMMKLGLDAMPKPNAFWVRIV 490 ++G++T K+ HL++ + I +K+ GLG R+ R++N + + K+G + ++ W R++ Sbjct: 281 VWGSSTEKKKQHLLAWNKIYCTKQAGGLGIRSSRAMNTALLAKIGWRLLQDKSSLWARVI 340
BLAST of GR398226 vs. TrEMBL
Match: Q2HVE2_MEDTR (RNA-directed DNA polymerase (Reverse transcriptase); Polynucleotidyl transferase, Ribonuclease H fold OS=Medicago truncatula GN=MtrDRAFT_AC148918g30v2 PE=4 SV=2) HSP 1 Score: 66.6254 bits (161), Expect = 1.505e-9 Identity = 31/82 (37.80%), Postives = 48/82 (58.54%), Query Frame = 1 Query: 97 LRKYSRVYVITGRNEKHSYAFIVDEVRRKVSGWKSNSLSMVGRIT-------SLSNYVMQYIVIPMSICDKVERL*NNFIWG 321 L KY + GR + + I+++++ K+SGWK LS+ GRIT S+ Y MQY IP +ICD++E++ F+WG Sbjct: 177 LGKYLGANITPGRTSRGHFNHIINKIQNKLSGWKQQCLSLAGRITLSKFVISSIPYYHMQYAKIPKTICDEIEKIQRGFVWG 258
BLAST of GR398226 vs. TrEMBL
Match: A2Q2Z7_MEDTR (Contains similarity to reverse trancriptase , related OS=Medicago truncatula GN=MtrDRAFT_AC153128g16v2 PE=4 SV=1) HSP 1 Score: 47.7506 bits (112), Expect = 5.439e-9 Identity = 23/82 (28.05%), Postives = 42/82 (51.22%), Query Frame = 1 Query: 97 LRKYSRVYVITGRNEKHSYAFIVDEVRRKVSGWKSNSLSMVGR-------ITSLSNYVMQYIVIPMSICDKVERL*NNFIWG 321 ++KY + GR+++ + FI++ + +K GWK LS GR ++ Y M ++P +C K+E+ +F WG Sbjct: 27 IQKYLGMPTQFGRSKEQDFHFIMERIWKKHKGWKKKCLSFEGRGVLIKAVAQAIPTYYMSCFMLPKGLCTKIEKAICSFWWG 108 HSP 2 Score: 36.965 bits (84), Expect = 5.439e-9 Identity = 17/53 (32.08%), Postives = 28/53 (52.83%), Query Frame = 2 Query: 314 FGATTNVKRCHLISRSTICKSKEDEGLGFRNLRSVNISYMMKLGLDAMPKPNA 472 +G T K+ H +S+ + +SK GLGF+ LR N++ + K PN+ Sbjct: 107 WGTTDKNKKMHWVSKKKLFRSKHSGGLGFKTLRDFNLAMLAKKVRRFYTNPNS 159 The following BLAST results are available for this feature:
BLAST of GR398226 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot) Total hits: 1
BLAST of GR398226 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl) Total hits: 10
InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >GR398226 ID=GR398226; Name=GR398226; organism=Cicer arietinum; type=EST; length=599bpback to top Annotated Terms
The
following terms have been associated with
this EST:
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