GR406712

EST Overview


Name	GR406712
Unique Name	GR406712
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	716

Libraries


Library Name	Type
LIBEST_024786 JG11 Salinity-stressed chickpea root cDNA library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

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BLAST of GR406712 vs. SwissProt
Match: VIPI_SCHPO (Protein vip1 OS=Schizosaccharomyces pombe GN=vip1 PE=1 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 7.713e-7
Identity = 36/140 (25.71%), Postives = 71/140 (50.71%), Query Frame = 2

Query:  224 NTIKVSNVSLGASEQDIKEFFSFSGDIEYVEMKSHDERSQIAYVTFKDPQGSETAVLLSGATIVDLSVNITLDPDYRLPPAALASSVTEGKTPGGADSALRKAED----VVTSMLAKGFILGKDAVNKAKGFDEKHKLTS 631
            N + V+N+S   +E+ I +FFSF G +  +  +   E +Q A + F+ P  ++TA+LL  A +    + IT +          AS+  +G    G D A R+ +     +++ +L++G+ L    + K+   D+ + ++S
Sbjct:    3 NQVIVTNISPEVTEKQISDFFSFCGKVSNISTEKSGE-TQTAKIQFERPSATKTALLLQDALLGQNKIQITSE------DGGAASTTDQG--GAGGDQAARQEDKPRSAIISELLSRGYHLSDVTLEKSIQLDQSYGVSS 133

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BLAST of GR406712 vs. TrEMBL
Match: C6TAU1_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 3.203e-64
Identity = 125/150 (83.33%), Postives = 140/150 (93.33%), Query Frame = 2

Query:  215 MSVNTIKVSNVSLGASEQDIKEFFSFSGDIEYVEMKSHDERSQIAYVTFKDPQGSETAVLLSGATIVDLSVNITLDPDYRLPPAALASSVTEGKTPGGADSALRKAEDVVTSMLAKGFILGKDAVNKAKGFDEKHKLTSTASAKVTSFDQ 664
            M++ T+KVSNVSLGA+EQDIKEFFSFSGDIEYVE++SHDERSQIAY+TFKD QG+ETA+LLSGATIVD+ V IT DPDY+LPPAALASSV E +TPGGADSALRKAEDVV+ MLAKGFILGKDAVNKAK FDEKH+L+STASAKV SFDQ
Sbjct:    1 MTMKTVKVSNVSLGATEQDIKEFFSFSGDIEYVELRSHDERSQIAYITFKDSQGAETALLLSGATIVDMPVTITRDPDYQLPPAALASSVRETQTPGGADSALRKAEDVVSGMLAKGFILGKDAVNKAKTFDEKHQLSSTASAKVASFDQ 150

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BLAST of GR406712 vs. TrEMBL
Match: C6TJQ6_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 3.915e-62
Identity = 123/151 (81.46%), Postives = 139/151 (92.05%), Query Frame = 2

Query:  215 MSVNTIKVSNVSLGASEQDIKEFFSFSGDIEYVEMKSHDERSQIAYVTFKDPQGSETAVLLSGATIVDLSVNITLDPDYRLPPAALASSVTEGKTP-GGADSALRKAEDVVTSMLAKGFILGKDAVNKAKGFDEKHKLTSTASAKVTSFDQ 664
            M++ T+KVSNVSLGA+EQDIKEFFSFSGDIEYVE++SHDERSQIA++TFKD QG+ETAVLLSGATIVD+ V I+LDPDY+LPPAALAS V E +TP GGADSA RKAEDVV+ MLAKGFILGKDAVNKAK FDEKH+L+STASAKV SFDQ
Sbjct:    1 MTIKTVKVSNVSLGATEQDIKEFFSFSGDIEYVELQSHDERSQIAFITFKDSQGAETAVLLSGATIVDMPVTISLDPDYQLPPAALASPVRETRTPGGGADSAFRKAEDVVSGMLAKGFILGKDAVNKAKTFDEKHQLSSTASAKVASFDQ 151

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BLAST of GR406712 vs. TrEMBL
Match: B7FIB3_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 5.653e-61
Identity = 122/150 (81.33%), Postives = 134/150 (89.33%), Query Frame = 2

Query:  215 MSVNTIKVSNVSLGASEQDIKEFFSFSGDIEYVEMKSHDERSQIAYVTFKDPQGSETAVLLSGATIVDLSVNITLDPDYRLPPAALASSVTEGKTPGGADSALRKAEDVVTSMLAKGFILGKDAVNKAKGFDEKHKLTSTASAKVTSFDQ 664
            MS+ T+KV NVSLGA+E+DI+EFFSFSGDI YVE++SHDERSQ AYVTFKD QG+ETAVLLSGATIVDLSVNITLDPDY+LPP AL S V+E KTPGGADSALRKAEDVVTSM AKGFILGKDAVNKAK FDEK +L+S ASA V S DQ
Sbjct:    1 MSIKTVKVGNVSLGATERDIQEFFSFSGDIAYVELRSHDERSQTAYVTFKDSQGAETAVLLSGATIVDLSVNITLDPDYQLPPEALVSPVSESKTPGGADSALRKAEDVVTSMAAKGFILGKDAVNKAKTFDEKLQLSSKASATVASVDQ 150

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BLAST of GR406712 vs. TrEMBL
Match: A9PE83_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 4.786e-60
Identity = 120/150 (80.00%), Postives = 133/150 (88.67%), Query Frame = 2

Query:  215 MSVNTIKVSNVSLGASEQDIKEFFSFSGDIEYVEMKSHDERSQIAYVTFKDPQGSETAVLLSGATIVDLSVNITLDPDYRLPPAALASSVTEGKTPGGADSALRKAEDVVTSMLAKGFILGKDAVNKAKGFDEKHKLTSTASAKVTSFDQ 664
            MSV T+KVSNVSLGASE+D+KEFFSFSGDIEYVEMKS +ERSQIAYVTFKD QG++TAVLLSGATIVDLSV + LDPDY+LPPAALA     G    G +SALRKAEDVV+ MLAKGFILGKDA+NKAKGFDEKH+LTSTASAKV SFD+
Sbjct:    1 MSVKTVKVSNVSLGASERDLKEFFSFSGDIEYVEMKSDNERSQIAYVTFKDSQGADTAVLLSGATIVDLSVTVALDPDYQLPPAALAELSATGNKAPGDESALRKAEDVVSGMLAKGFILGKDAINKAKGFDEKHQLTSTASAKVVSFDK 150

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BLAST of GR406712 vs. TrEMBL
Match: B9SRC6_RICCO (Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0614010 PE=4 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 3.102e-59
Identity = 119/150 (79.33%), Postives = 136/150 (90.67%), Query Frame = 2

Query:  215 MSVNTIKVSNVSLGASEQDIKEFFSFSGDIEYVEMKSHDERSQIAYVTFKDPQGSETAVLLSGATIVDLSVNITLDPDYRLPPAALASSVTEGKTPGGADSALRKAEDVVTSMLAKGFILGKDAVNKAKGFDEKHKLTSTASAKVTSFDQ 664
            M V T+KVSNVSLGA+E+D++EFFSFSGDIEYVE++  DE+SQIAYVT+KD QG+ETAVLLSGATIVDLSV+ITLDPDY+LPPA     VT+ KTPGGA+SALRKAEDVVTSMLAKGFILGKDAVNKAK FD+KH+LTSTASAKV S D+
Sbjct:    1 MRVRTVKVSNVSLGATERDLREFFSFSGDIEYVEVRRDDEKSQIAYVTYKDSQGAETAVLLSGATIVDLSVSITLDPDYQLPPA-----VTQNKTPGGAESALRKAEDVVTSMLAKGFILGKDAVNKAKTFDDKHQLTSTASAKVVSLDK 145

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BLAST of GR406712 vs. TrEMBL
Match: B9MU59_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_423740 PE=4 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 3.102e-59
Identity = 118/150 (78.67%), Postives = 132/150 (88.00%), Query Frame = 2

Query:  215 MSVNTIKVSNVSLGASEQDIKEFFSFSGDIEYVEMKSHDERSQIAYVTFKDPQGSETAVLLSGATIVDLSVNITLDPDYRLPPAALASSVTEGKTPGGADSALRKAEDVVTSMLAKGFILGKDAVNKAKGFDEKHKLTSTASAKVTSFDQ 664
            + V T+KVSNVSLGASE+D+KEFFSFSGDIEYVEMKS +ERSQIAYVTFKD QG++TAVLLSGATIVDLSV + LDPDY+LPPAALA     G    G +SALRKAEDVV+ MLAKGFILGKDA+NKAKGFDEKH+LTSTASAKV SFD+
Sbjct:    1 LQVKTVKVSNVSLGASERDLKEFFSFSGDIEYVEMKSDNERSQIAYVTFKDSQGADTAVLLSGATIVDLSVTVALDPDYQLPPAALAELSATGNKAPGDESALRKAEDVVSGMLAKGFILGKDAINKAKGFDEKHQLTSTASAKVVSFDK 150

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BLAST of GR406712 vs. TrEMBL
Match: B9GZI4_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_646278 PE=4 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 5.291e-59
Identity = 119/150 (79.33%), Postives = 133/150 (88.67%), Query Frame = 2

Query:  215 MSVNTIKVSNVSLGASEQDIKEFFSFSGDIEYVEMKSHDERSQIAYVTFKDPQGSETAVLLSGATIVDLSVNITLDPDYRLPPAALASSVTEGKTPGGADSALRKAEDVVTSMLAKGFILGKDAVNKAKGFDEKHKLTSTASAKVTSFDQ 664
            MSV T+KVSNVSLGASEQD+KEFFSFSGDIEYVEMKS +E+SQIAYV+FKD QG++TAVLLSGATIVDL V +TLDPDY+LPPAALA+  TE K P   +SAL KAEDVVT MLAKGFILGKDA+NKAK FDEKH+LTSTASAKV S D+
Sbjct:    5 MSVKTVKVSNVSLGASEQDLKEFFSFSGDIEYVEMKSENEQSQIAYVSFKDSQGADTAVLLSGATIVDLPVTVTLDPDYQLPPAALAALATENKAPSD-ESALHKAEDVVTGMLAKGFILGKDAINKAKSFDEKHQLTSTASAKVASLDK 153

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BLAST of GR406712 vs. TrEMBL
Match: D7TTS9_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_12.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00013098001 PE=4 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 4.635e-55
Identity = 113/152 (74.34%), Postives = 131/152 (86.18%), Query Frame = 2

Query:  215 MSVNTIKVSNVSLGASEQDIKEFFSFSGDIEYVEMKSHDERSQIAYVTFKDPQGSETAVLLSGATIVDLSVNITLDPDYRLPPAALASS--VTEGKTPGGADSALRKAEDVVTSMLAKGFILGKDAVNKAKGFDEKHKLTSTASAKVTSFDQ 664
            M + T+KVSNVSLGA+EQDIKEFFSFSGDIE VEM+S +ERSQIAYVTFKD QG+ETA+LLSGATIVD+SV IT  PDY+LPPAA ++     E KTPG A+SA RK EDVV+ MLAKG+ILGKDAVNKAK FDEKH+LTSTA++KV SFD+
Sbjct:    1 MPITTVKVSNVSLGATEQDIKEFFSFSGDIECVEMQSDNERSQIAYVTFKDMQGAETAILLSGATIVDMSVTITPAPDYQLPPAAASAPPLPKENKTPGRAESAFRKTEDVVSGMLAKGYILGKDAVNKAKSFDEKHQLTSTATSKVVSFDK 152

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BLAST of GR406712 vs. TrEMBL
Match: B9S228_RICCO (Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_1326600 PE=4 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.491e-53
Identity = 109/151 (72.19%), Postives = 129/151 (85.43%), Query Frame = 2

Query:  215 MSVNTIKVSNVSLGASEQDIKEFFSFSGDIEYVEMKSHDERSQIAYVTFKDPQGSETAVLLSGATIVDLSVNITLDPDYRLPPAA-LASSVTEGKTPGGADSALRKAEDVVTSMLAKGFILGKDAVNKAKGFDEKHKLTSTASAKVTSFDQ 664
            M++ T+KVSNVSLGA+EQDIKEFFSFSGDI+YVE+   +ERSQIAYVTFKD QG+ETAVLLSGATIVD SV I L PDY+LP AA + ++ TE  T  GA+SA +KAED+V+SMLAKGFILGKDAVNKAK FDEKH+ TSTA++KV S D+
Sbjct:    1 MAITTVKVSNVSLGATEQDIKEFFSFSGDIDYVELLGDNERSQIAYVTFKDQQGAETAVLLSGATIVDQSVTIELAPDYKLPAAASVPTTATESSTASGAESAFQKAEDIVSSMLAKGFILGKDAVNKAKAFDEKHQFTSTATSKVASLDE 151

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BLAST of GR406712 vs. TrEMBL
Match: D7T7N4_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_39.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00024381001 PE=4 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.262e-52
Identity = 109/151 (72.19%), Postives = 127/151 (84.11%), Query Frame = 2

Query:  215 MSVNTIKVSNVSLGASEQDIKEFFSFSGDIEYVEMKSHDERSQIAYVTFKDPQGSETAVLLSGATIVDLSVNITLDPDYRLPPAA-LASSVTEGKTPGGADSALRKAEDVVTSMLAKGFILGKDAVNKAKGFDEKHKLTSTASAKVTSFDQ 664
            M+++T+KVSNVSLGASEQDIKEFFSFSG+IEYVEM+S +ERSQ+AYVTFKD QG+ETAVLLSGATIVD+SV I   PDY+LP AA +    TE    G  +S L+KAEDVV+ MLAKGFILGKDA+NKAK FDE+H+ TSTASAKV S DQ
Sbjct:    1 MAISTVKVSNVSLGASEQDIKEFFSFSGEIEYVEMQSENERSQVAYVTFKDTQGAETAVLLSGATIVDMSVIIAPAPDYKLPAAASVQPRATENTNVGAGESPLQKAEDVVSGMLAKGFILGKDALNKAKSFDERHQFTSTASAKVVSLDQ 151

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BLAST of GR406712 vs. TAIR peptide
Match: AT4G17720.1 (| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:9862660-9864498 REVERSE LENGTH=313)

HSP 1 Score: 199.134 bits (505), Expect = 1.964e-51
Identity = 104/152 (68.42%), Postives = 126/152 (82.89%), Query Frame = 2

Query:  215 MSVNTIKVSNVSLGASEQDIKEFFSFSGDIEYVEMKSHDERSQIAYVTFKDPQGSETAVLLSGATIVDLSVNITLDPDYRLPPAALAS--SVTEGKTPGGADSALRKAEDVVTSMLAKGFILGKDAVNKAKGFDEKHKLTSTASAKVTSFDQ 664
            M++ T+KVSNVSLGA+++D+KEFFSFSGDI Y+E +S  ER+++AYVTFKD QG+ETAVLLSGATIVD SV +++ PDY+L P ALAS       K+P   DS LRKAEDVV+SMLAKGFILGKDA+ KAK  DEKH+LTSTASAKV SFD+
Sbjct:    1 MTMTTVKVSNVSLGATDRDLKEFFSFSGDILYLETQSETERTKLAYVTFKDLQGAETAVLLSGATIVDSSVIVSMAPDYQLSPEALASLEPKDSNKSPKAGDSVLRKAEDVVSSMLAKGFILGKDAIAKAKSVDEKHQLTSTASAKVASFDK 152

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BLAST of GR406712 vs. TAIR peptide
Match: AT5G46870.1 (| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:19015486-19016990 FORWARD LENGTH=295)

HSP 1 Score: 187.963 bits (476), Expect = 4.527e-48
Identity = 98/156 (62.82%), Postives = 125/156 (80.13%), Query Frame = 2

Query:  215 MSVNTIKVSNVSLGASEQDIKEFFSFSGDIEYVEMKSHDERSQIAYVTFKDPQGSETAVLLSGATIVDLSVNITLDPDYRLPPAALAS-----SVTEGKTPGGAD-SALRKAEDVVTSMLAKGFILGKDAVNKAKGFDEKHKLTSTASAKVTSFDQ 664
            MS+ T+KVSNVSL A+E+D+KEFFSFSGDI Y+E +S ++ S++AYVTFKD QG+ETAVLL+G+TIVD SV +T+ PDY+LPP ALAS        +  +P   D S  RKAEDVV+ M++KGF+LGKDA+ KAK  DEKH+LTSTASA+VTSFD+
Sbjct:    1 MSMVTVKVSNVSLEATERDLKEFFSFSGDIAYLETQSENDGSKLAYVTFKDLQGAETAVLLTGSTIVDSSVTVTMSPDYQLPPDALASIESLKESNKSSSPTREDVSVFRKAEDVVSGMISKGFVLGKDAIAKAKSLDEKHQLTSTASARVTSFDK 156

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BLAST of GR406712 vs. TAIR peptide
Match: AT5G16840.2 (| Symbols: BPA1 | binding partner of acd11 1 | chr5:5536042-5538026 FORWARD LENGTH=260)

HSP 1 Score: 163.696 bits (413), Expect = 9.142e-41
Identity = 90/148 (60.81%), Postives = 112/148 (75.68%), Query Frame = 2

Query:  221 VNTIKVSNVSLGASEQDIKEFFSFSGDIEYVEMKSHDERSQIAYVTFKDPQGSETAVLLSGATIVDLSVNITLDPDYRLPPAALASSVTEGKTPGGADSALRKAEDVVTSMLAKGFILGKDAVNKAKGFDEKHKLTSTASAKVTSFDQ 664
            V ++KV N+S GA+E DIKEFFSFSG++E ++++S +E S  AYVTFK+ QG+ETAVLLSGA+I D SV I L P+Y  P A  A + + G     A+S ++KAEDVV+SMLAKGFILGKDAV KAK FDEKH  TSTA+A V S DQ
Sbjct:    5 VRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSSNEHS--AYVTFKETQGAETAVLLSGASIADQSVIIELAPNYSPPAAPHAETQSSG-----AESVVQKAEDVVSSMLAKGFILGKDAVGKAKAFDEKHGFTSTATAGVASLDQ 145

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BLAST of GR406712 vs. TAIR peptide
Match: AT1G67950.3 (| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:25478884-25480420 REVERSE LENGTH=279)

HSP 1 Score: 163.31 bits (412), Expect = 1.194e-40
Identity = 84/147 (57.14%), Postives = 109/147 (74.15%), Query Frame = 2

Query:  221 VNTIKVSNVSLGASEQDIKEFFSFSGDIEYVEMKSHDERSQIAYVTFKDPQGSETAVLLSGATIVDLSVNITLDPDYRLPPAALASSVTEGKTPGGADSALRKAEDVVTSMLAKGFILGKDAVNKAKGFDEKHKLTSTASAKVTSFD 661
            V T+K+SNVSL  S++D+KEFFSFSGDI+YVEM+S  + SQ+AYVTFKD QG+ETA+LL+GA I DL V+IT   +Y+LPP ALA    E    G    +++KAEDVV  M+ +G+ LGKDA+ KAK FD++H L S ASA + S D
Sbjct:   28 VKTVKISNVSLIVSKKDVKEFFSFSGDIQYVEMRSETQESQVAYVTFKDSQGAETAMLLTGAVIADLRVSITPAVNYQLPPEALALDSQEHSFNG---FSVKKAEDVVNIMVGRGYALGKDAMEKAKAFDDRHNLISNASATIASLD 171

[Close]

BLAST of GR406712 vs. TAIR peptide
Match: AT5G16840.3 (| Symbols: BPA1 | binding partner of acd11 1 | chr5:5536042-5538026 FORWARD LENGTH=257)

HSP 1 Score: 162.925 bits (411), Expect = 1.559e-40
Identity = 89/150 (59.33%), Postives = 113/150 (75.33%), Query Frame = 2

Query:  215 MSVNTIKVSNVSLGASEQDIKEFFSFSGDIEYVEMKSHDERSQIAYVTFKDPQGSETAVLLSGATIVDLSVNITLDPDYRLPPAALASSVTEGKTPGGADSALRKAEDVVTSMLAKGFILGKDAVNKAKGFDEKHKLTSTASAKVTSFDQ 664
            M+V ++KV N+S GA+E DIKEFFSFSG++E ++++S++     AYVTFK+ QG+ETAVLLSGA+I D SV I L P+Y  P A  A + + G     A+S ++KAEDVV+SMLAKGFILGKDAV KAK FDEKH  TSTA+A V S DQ
Sbjct:    1 MAVRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSNEHS---AYVTFKETQGAETAVLLSGASIADQSVIIELAPNYSPPAAPHAETQSSG-----AESVVQKAEDVVSSMLAKGFILGKDAVGKAKAFDEKHGFTSTATAGVASLDQ 142

[Close]

BLAST of GR406712 vs. TAIR peptide
Match: AT5G16840.1 (| Symbols: BPA1 | binding partner of acd11 1 | chr5:5536042-5538026 FORWARD LENGTH=259)

HSP 1 Score: 160.614 bits (405), Expect = 7.739e-40
Identity = 88/148 (59.46%), Postives = 111/148 (75.00%), Query Frame = 2

Query:  221 VNTIKVSNVSLGASEQDIKEFFSFSGDIEYVEMKSHDERSQIAYVTFKDPQGSETAVLLSGATIVDLSVNITLDPDYRLPPAALASSVTEGKTPGGADSALRKAEDVVTSMLAKGFILGKDAVNKAKGFDEKHKLTSTASAKVTSFDQ 664
            V ++KV N+S GA+E DIKEFFSFSG++E ++++S++     AYVTFK+ QG+ETAVLLSGA+I D SV I L P+Y  P A  A + + G     A+S ++KAEDVV+SMLAKGFILGKDAV KAK FDEKH  TSTA+A V S DQ
Sbjct:    5 VRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSNEHS---AYVTFKETQGAETAVLLSGASIADQSVIIELAPNYSPPAAPHAETQSSG-----AESVVQKAEDVVSSMLAKGFILGKDAVGKAKAFDEKHGFTSTATAGVASLDQ 144

[Close]

BLAST of GR406712 vs. TAIR peptide
Match: AT1G67950.2 (| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:25478884-25480072 REVERSE LENGTH=279)

HSP 1 Score: 160.229 bits (404), Expect = 1.011e-39
Identity = 84/147 (57.14%), Postives = 110/147 (74.83%), Query Frame = 2

Query:  221 VNTIKVSNVSLGASEQDIKEFFSFSGDIEYVEMKSHDERSQIAYVTFKDPQGSETAVLLSGATIVDLSVNITLDPDYRLPPAALASSVTEGKTPGGADSALRKAEDVVTSMLAKGFILGKDAVNKAKGFDEKHKLTSTASAKVTSFD 661
            V T+K+SNVSL  S++D+KEFFSFSGDI+YVEM+S  + SQ+AYVTFKD QG+ETA+LL+GA I DL V+IT   +Y+LPP ALA   +E    G    +++KAEDVV  M+ +G+ LGKDA+ KAK FD++H L S ASA + S D
Sbjct:   29 VKTVKISNVSLIVSKKDVKEFFSFSGDIQYVEMRSETQESQVAYVTFKDSQGAETAMLLTGAVIADLRVSITPAVNYQLPPEALALD-SEHSFNG---FSVKKAEDVVNIMVGRGYALGKDAMEKAKAFDDRHNLISNASATIASLD 171

[Close]

BLAST of GR406712 vs. TAIR peptide
Match: AT1G67950.1 (| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:25478884-25480420 REVERSE LENGTH=278)

HSP 1 Score: 160.229 bits (404), Expect = 1.011e-39
Identity = 84/147 (57.14%), Postives = 110/147 (74.83%), Query Frame = 2

Query:  221 VNTIKVSNVSLGASEQDIKEFFSFSGDIEYVEMKSHDERSQIAYVTFKDPQGSETAVLLSGATIVDLSVNITLDPDYRLPPAALASSVTEGKTPGGADSALRKAEDVVTSMLAKGFILGKDAVNKAKGFDEKHKLTSTASAKVTSFD 661
            V T+K+SNVSL  S++D+KEFFSFSGDI+YVEM+S  + SQ+AYVTFKD QG+ETA+LL+GA I DL V+IT   +Y+LPP ALA   +E    G    +++KAEDVV  M+ +G+ LGKDA+ KAK FD++H L S ASA + S D
Sbjct:   28 VKTVKISNVSLIVSKKDVKEFFSFSGDIQYVEMRSETQESQVAYVTFKDSQGAETAMLLTGAVIADLRVSITPAVNYQLPPEALALD-SEHSFNG---FSVKKAEDVVNIMVGRGYALGKDAMEKAKAFDDRHNLISNASATIASLD 170

[Close]

BLAST of GR406712 vs. TAIR peptide
Match: AT5G32450.1 (| Symbols: | RNA binding (RRM/RBD/RNP motifs) family protein | chr5:12079707-12081317 FORWARD LENGTH=267)

HSP 1 Score: 139.428 bits (350), Expect = 1.846e-33
Identity = 80/164 (48.78%), Postives = 110/164 (67.07%), Query Frame = 2

Query:  218 SVNTIKVSNVSLGASEQDIKEFFSFSGDIEYVEMKSHDERSQIAYVTFKDPQGSETAVLLSGATIVDLSVNITLDPDY-------------RLPPAALASSVTEGKT--PGGADSALRKAEDVVTSMLAKGFILGKDAVNKAKGFDEKHKLTSTASAKVTSFDQ 664
            +  +++V+NVS  A+E++I EFFSFSGDIE++E++    +S+IA+VTF DP+  E A+LLSGATIVD  V IT   +Y                P  L  S T+ KT   G + + + KA+DVV ++LAKG  LG+DAVNKAK FDEKH+L + ASAKV+SFD+
Sbjct:    3 TTRSVQVNNVSDLATEREIHEFFSFSGDIEHIEIQKEFGQSRIAFVTFTDPKALEIALLLSGATIVDQIVTITRAENYVQRRETQEVRMLDNAMPLGLQESTTQTKTNMDGNSRAYVSKAQDVVATVLAKGSALGQDAVNKAKAFDEKHQLRANASAKVSSFDK 166

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BLAST of GR406712 vs. TAIR peptide
Match: AT1G67950.4 (| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:25478884-25479778 REVERSE LENGTH=219)

HSP 1 Score: 112.849 bits (281), Expect = 1.851e-25
Identity = 61/115 (53.04%), Postives = 81/115 (70.43%), Query Frame = 2

Query:  317 MKSHDERSQIAYVTFKDPQGSETAVLLSGATIVDLSVNITLDPDYRLPPAALASSVTEGKTPGGADSALRKAEDVVTSMLAKGFILGKDAVNKAKGFDEKHKLTSTASAKVTSFD 661
            M+S  + SQ+AYVTFKD QG+ETA+LL+GA I DL V+IT   +Y+LPP ALA   +E    G    +++KAEDVV  M+ +G+ LGKDA+ KAK FD++H L S ASA + S D
Sbjct:    1 MRSETQESQVAYVTFKDSQGAETAMLLTGAVIADLRVSITPAVNYQLPPEALALD-SEHSFNG---FSVKKAEDVVNIMVGRGYALGKDAMEKAKAFDDRHNLISNASATIASLD 111

The following BLAST results are available for this feature:

BLAST of GR406712 vs. SwissProt
BLAST of GR406712 vs. TrEMBL
BLAST of GR406712 vs. TAIR peptide

BLAST of GR406712 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 1


Match Name	E-value	Identity	Description
VIPI_SCHPO	7.713e-7	25.71	Protein vip1 OS=Schizosaccharomyces pombe GN=vip1 ...	[more]

BLAST of GR406712 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
C6TAU1_SOYBN	3.203e-64	83.33	Putative uncharacterized protein OS=Glycine max PE...	[more]
C6TJQ6_SOYBN	3.915e-62	81.46	Putative uncharacterized protein OS=Glycine max PE...	[more]
B7FIB3_MEDTR	5.653e-61	81.33	Putative uncharacterized protein OS=Medicago trunc...	[more]
A9PE83_POPTR	4.786e-60	80.00	Putative uncharacterized protein OS=Populus tricho...	[more]
B9SRC6_RICCO	3.102e-59	79.33	Nucleic acid binding protein, putative OS=Ricinus ...	[more]
B9MU59_POPTR	3.102e-59	78.67	Predicted protein (Fragment) OS=Populus trichocarp...	[more]
B9GZI4_POPTR	5.291e-59	79.33	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
D7TTS9_VITVI	4.635e-55	74.34	Whole genome shotgun sequence of line PN40024, sca...	[more]
B9S228_RICCO	1.491e-53	72.19	Nucleic acid binding protein, putative OS=Ricinus ...	[more]
D7T7N4_VITVI	1.262e-52	72.19	Whole genome shotgun sequence of line PN40024, sca...	[more]

BLAST of GR406712 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 10


Match Name	E-value	Identity	Description
AT4G17720.1	1.964e-51	68.42	\| Symbols: \| RNA-binding (RRM/RBD/RNP motifs) fam...	[more]
AT5G46870.1	4.527e-48	62.82	\| Symbols: \| RNA-binding (RRM/RBD/RNP motifs) fam...	[more]
AT5G16840.2	9.142e-41	60.81	\| Symbols: BPA1 \| binding partner of acd11 1 \| chr...	[more]
AT1G67950.3	1.194e-40	57.14	\| Symbols: \| RNA-binding (RRM/RBD/RNP motifs) fam...	[more]
AT5G16840.3	1.559e-40	59.33	\| Symbols: BPA1 \| binding partner of acd11 1 \| chr...	[more]
AT5G16840.1	7.739e-40	59.46	\| Symbols: BPA1 \| binding partner of acd11 1 \| chr...	[more]
AT1G67950.2	1.011e-39	57.14	\| Symbols: \| RNA-binding (RRM/RBD/RNP motifs) fam...	[more]
AT1G67950.1	1.011e-39	57.14	\| Symbols: \| RNA-binding (RRM/RBD/RNP motifs) fam...	[more]
AT5G32450.1	1.846e-33	48.78	\| Symbols: \| RNA binding (RRM/RBD/RNP motifs) fam...	[more]
AT1G67950.4	1.851e-25	53.04	\| Symbols: \| RNA-binding (RRM/RBD/RNP motifs) fam...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 35..94 score: 6.1
IPR000504	RNA recognition motif domain	SMART	SM00360	no description	coord: 33..102 score: 3.8
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 32..106 score: 10
IPR001395	Aldo/keto reductase	PANTHER	PTHR11732	ALDO/KETO REDUCTASE	coord: 49..182 score: 1.3
IPR012677	Nucleotide-binding, alpha-beta plait	GENE3D	3.30.70.330	no description	coord: 32..96 score: 3.8
None	No IPR available	PANTHER	PTHR11732:SF1	ALDO/KETO REDUCTASE	coord: 49..182 score: 1.3
None	No IPR available	SEG	seg	seg	coord: 8..21 score
None	No IPR available	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 27..117 score: 3.2
None	No IPR available	SEG	seg	seg	coord: 51..64 score

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR406712 ID=GR406712; Name=GR406712; organism=Cicer arietinum; type=EST; length=716bp
AAATTCCAATAACGCGGTTTACCCTGTTCTACTCAACTCAAACTGAAGTT
ACCAGCACGCTACTCGCACGTGCGACTGAAATCCAGCACGTGTTTCCAAG
TCCTCTTTCTCTAGCTCAAAAATCTACTAGTCGTCTCGTCTATGCACCAC
ACTTCAACTCCCCTTTCTTCTCTTCATTCCTCTCAAACCCCCTCGCCGTT
ACTTTTCGCCGGACATGTCGGTCAACACTATTAAAGTCAGTAACGTTTCC
TTGGGAGCATCTGAACAAGACATTAAGGAGTTCTTTTCATTTTCCGGTGA
TATTGAATATGTTGAAATGAAAAGTCATGATGAACGATCTCAAATTGCCT
ATGTTACTTTCAAGGATCCACAAGGTTCTGAGACTGCAGTACTACTATCG
GGAGCAACAATAGTTGATTTGTCAGTTAACATAACTCTGGATCCAGATTA
CCGGCTTCCACCTGCTGCCTTGGCATCATCTGTCACAGAAGGTAAAACTC
CTGGCGGTGCCGACTCTGCTTTACGAAAGGCAGAGGATGTGGTCACCAGC
ATGCTTGCCAAGGGCTTTATCTTGGGTAAAGATGCTGTGAACAAAGCAAA
GGGTTTTGATGAGAAGCACAAGTTAACTTCAACAGCCTCAGCGAAAGTTA
CGTCTTTTGACCAAAACTTGGGATTAGTGAGAAATTAAGTGTCGGTGCTT
CGGTTGTGAGTGATAG

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0016491	oxidoreductase activity
GO:0000166	nucleotide binding

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	obsolete oxidation-reduction process

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR001395	Aldo/ket_red/Kv-b
IPR012677	Nucleotide-bd_a/b_plait_sf

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