HO067775

EST Overview


Name	HO067775
Unique Name	HO067775
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	358

Libraries


Library Name	Type
LIBEST_026415 Chickpea drought stressed cDNA SSH library BULK2	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of HO067775 vs. SwissProt
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.832e-11
Identity = 27/51 (52.94%), Postives = 39/51 (76.47%), Query Frame = 2

Query:   62 AKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPK 214
            AK++TDP T  S+GYGFV+F+DE+++  A++EM G  C  RP+R+  ATPK
Sbjct:  216 AKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPK 266

[Close]

BLAST of HO067775 vs. SwissProt
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 1.100e-9
Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 2

Query:   62 AKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPK 214
            AK++ DP TG S+ YGFV+FS E E+  A+  M G  C  RP+RIS A+PK
Sbjct:  212 AKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPK 262

[Close]

BLAST of HO067775 vs. SwissProt
Match: TSAP1_MOUSE (tRNA selenocysteine 1-associated protein 1 OS=Mus musculus GN=Trnau1ap PE=1 SV=2)

HSP 1 Score: 57.3806 bits (137), Expect = 2.709e-8
Identity = 31/53 (58.49%), Postives = 38/53 (71.70%), Query Frame = 2

Query:   59 GAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNG-VYCSTRPMRISAATPK 214
            G KVV DP TG SKGYGFVKF+DE E+ RA++E  G V    +P+R+S A PK
Sbjct:  125 GGKVVLDP-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPK 176

[Close]

BLAST of HO067775 vs. SwissProt
Match: RBM42_RAT (RNA-binding protein 42 OS=Rattus norvegicus GN=Rbm42 PE=1 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 2.709e-8
Identity = 25/45 (55.56%), Postives = 33/45 (73.33%), Query Frame = 2

Query:   62 AKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRI 196
            AKV+ D  TG++KGYGFV F D S+  RAM EMNG Y  +RP+++
Sbjct:  404 AKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKL 448

[Close]

BLAST of HO067775 vs. SwissProt
Match: RBM42_MOUSE (RNA-binding protein 42 OS=Mus musculus GN=Rbm42 PE=1 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 2.709e-8
Identity = 25/45 (55.56%), Postives = 33/45 (73.33%), Query Frame = 2

Query:   62 AKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRI 196
            AKV+ D  TG++KGYGFV F D S+  RAM EMNG Y  +RP+++
Sbjct:  404 AKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKL 448

[Close]

BLAST of HO067775 vs. SwissProt
Match: RBM42_HUMAN (RNA-binding protein 42 OS=Homo sapiens GN=RBM42 PE=1 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 2.709e-8
Identity = 25/45 (55.56%), Postives = 33/45 (73.33%), Query Frame = 2

Query:   62 AKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRI 196
            AKV+ D  TG++KGYGFV F D S+  RAM EMNG Y  +RP+++
Sbjct:  410 AKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKL 454

[Close]

BLAST of HO067775 vs. SwissProt
Match: RBM42_BOVIN (RNA-binding protein 42 OS=Bos taurus GN=RBM42 PE=2 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 2.709e-8
Identity = 25/45 (55.56%), Postives = 33/45 (73.33%), Query Frame = 2

Query:   62 AKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRI 196
            AKV+ D  TG++KGYGFV F D S+  RAM EMNG Y  +RP+++
Sbjct:  378 AKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKL 422

[Close]

BLAST of HO067775 vs. SwissProt
Match: NGR1_YEAST (Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae GN=NGR1 PE=1 SV=2)

HSP 1 Score: 56.9954 bits (136), Expect = 3.538e-8
Identity = 25/50 (50.00%), Postives = 37/50 (74.00%), Query Frame = 2

Query:   65 KVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPK 214
            +V+TDP TG S+ +GFV+F DE ER RA+ EM+G +   R +R++ ATP+
Sbjct:  223 RVMTDPLTGSSRCFGFVRFGDEDERRRALIEMSGKWFQGRALRVAYATPR 272

[Close]

BLAST of HO067775 vs. SwissProt
Match: TSP1L_DANRE (tRNA selenocysteine 1-associated protein 1-like OS=Danio rerio GN=trnau1apl PE=2 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 6.035e-8
Identity = 32/58 (55.17%), Postives = 39/58 (67.24%), Query Frame = 2

Query:   59 GAKVVTDPNTGRSKGYGFVKFSDESERNRAMSE-MNGVYCSTRPMRISAATPKKTTAS 229
            GAKVVTDP  G S+GYGFVKFSDE+E+ +A+ E  N      +P+RIS A  K   AS
Sbjct:  128 GAKVVTDPY-GNSRGYGFVKFSDENEQKKALEEFQNASGLGGKPIRISIAVNKGNKAS 184

[Close]

BLAST of HO067775 vs. SwissProt
Match: RBM42_XENTR (RNA-binding protein 42 OS=Xenopus tropicalis GN=rbm42 PE=2 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 6.035e-8
Identity = 24/45 (53.33%), Postives = 33/45 (73.33%), Query Frame = 2

Query:   62 AKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRI 196
            AKV+ D  TG++KGYGFV F D ++  RAM EMNG Y  +RP+++
Sbjct:  322 AKVIRDKRTGKTKGYGFVSFKDPNDYVRAMREMNGKYVGSRPIKL 366

[Close]

BLAST of HO067775 vs. TrEMBL
Match: D7SL59_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_4.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00025280001 PE=4 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.900e-23
Identity = 59/100 (59.00%), Postives = 64/100 (64.00%), Query Frame = 2

Query:   59 GAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPKKTTASXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAPLNTIPPEYDVNN 358
            GAKVVTDPNTGR+KGYGFVKFSDE ERNRAM+EMNGVYCSTRPMRISAATPKKTT                              T PL  +P + D+NN
Sbjct:  163 GAKVVTDPNTGRTKGYGFVKFSDEMERNRAMTEMNGVYCSTRPMRISAATPKKTTG----------FQQQYAAAAKALYPAPAYTTPPLQALPADNDINN 252

[Close]

BLAST of HO067775 vs. TrEMBL
Match: B9RIB9_RICCO (Nuclear acid binding protein, putative OS=Ricinus communis GN=RCOM_1577640 PE=4 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.231e-22
Identity = 57/100 (57.00%), Postives = 64/100 (64.00%), Query Frame = 2

Query:   59 GAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPKKTTASXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAPLNTIPPEYDVNN 358
            GAKVVTDPNTGRSKGYGFVKF DE+ERNRAM+EMNGV+CSTRPMRISAATPKKT A                             TAP+  +P + D+ N
Sbjct:  144 GAKVVTDPNTGRSKGYGFVKFGDENERNRAMTEMNGVFCSTRPMRISAATPKKTAA------------YQQQYATAKAIYPLPAYTAPVQVVPADNDITN 231

[Close]

BLAST of HO067775 vs. TrEMBL
Match: Q10R21_ORYSJ (RNA recognition motif family protein, expressed OS=Oryza sativa subsp. japonica GN=LOC_Os03g07800 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.743e-22
Identity = 50/57 (87.72%), Postives = 55/57 (96.49%), Query Frame = 2

Query:   59 GAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPKKTTAS 229
            GAKVVTDPNTGRSKGYGFVKF+DE+E+NRAM+EMNG+YCSTRPMRISAA PKKTT S
Sbjct:  138 GAKVVTDPNTGRSKGYGFVKFADENEKNRAMTEMNGMYCSTRPMRISAAIPKKTTGS 194

[Close]

BLAST of HO067775 vs. TrEMBL
Match: Q0DUQ0_ORYSJ (Os03g0174100 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os03g0174100 PE=4 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.743e-22
Identity = 50/57 (87.72%), Postives = 55/57 (96.49%), Query Frame = 2

Query:   59 GAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPKKTTAS 229
            GAKVVTDPNTGRSKGYGFVKF+DE+E+NRAM+EMNG+YCSTRPMRISAA PKKTT S
Sbjct:  160 GAKVVTDPNTGRSKGYGFVKFADENEKNRAMTEMNGMYCSTRPMRISAAIPKKTTGS 216

[Close]

BLAST of HO067775 vs. TrEMBL
Match: B9HNV7_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_1087962 PE=4 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.743e-22
Identity = 50/56 (89.29%), Postives = 55/56 (98.21%), Query Frame = 2

Query:   59 GAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPKKTTA 226
            GAKVVTDPNTGRSKGYGFVKF+DE+ERNRAM+EMNGV+CSTRPMRIS ATPKKTT+
Sbjct:  142 GAKVVTDPNTGRSKGYGFVKFADENERNRAMTEMNGVFCSTRPMRISMATPKKTTS 197

[Close]

BLAST of HO067775 vs. TrEMBL
Match: B9FBL3_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_09609 PE=4 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.743e-22
Identity = 50/57 (87.72%), Postives = 55/57 (96.49%), Query Frame = 2

Query:   59 GAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPKKTTAS 229
            GAKVVTDPNTGRSKGYGFVKF+DE+E+NRAM+EMNG+YCSTRPMRISAA PKKTT S
Sbjct:   58 GAKVVTDPNTGRSKGYGFVKFADENEKNRAMTEMNGMYCSTRPMRISAAIPKKTTGS 114

[Close]

BLAST of HO067775 vs. TrEMBL
Match: B8APB9_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_10216 PE=4 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.743e-22
Identity = 50/57 (87.72%), Postives = 55/57 (96.49%), Query Frame = 2

Query:   59 GAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPKKTTAS 229
            GAKVVTDPNTGRSKGYGFVKF+DE+E+NRAM+EMNG+YCSTRPMRISAA PKKTT S
Sbjct:  138 GAKVVTDPNTGRSKGYGFVKFADENEKNRAMTEMNGMYCSTRPMRISAAIPKKTTGS 194

[Close]

BLAST of HO067775 vs. TrEMBL
Match: C5WVW4_SORBI (Putative uncharacterized protein Sb01g045570 OS=Sorghum bicolor GN=Sb01g045570 PE=4 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.583e-22
Identity = 50/57 (87.72%), Postives = 55/57 (96.49%), Query Frame = 2

Query:   59 GAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPKKTTAS 229
            GAKVVTDPNTGRSKGYGFVKF+DE+E+NRAM+EMNGVYCSTRPMRISAA PKK+T S
Sbjct:  137 GAKVVTDPNTGRSKGYGFVKFADENEKNRAMTEMNGVYCSTRPMRISAAIPKKSTGS 193

[Close]

BLAST of HO067775 vs. TrEMBL
Match: C4IYK3_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.583e-22
Identity = 50/57 (87.72%), Postives = 55/57 (96.49%), Query Frame = 2

Query:   59 GAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPKKTTAS 229
            GAKVVTDPNTGRSKGYGFVKF+DE+E+NRAM+EMNGVYCSTRPMRISAA PKK+T S
Sbjct:  137 GAKVVTDPNTGRSKGYGFVKFADENEKNRAMTEMNGVYCSTRPMRISAAIPKKSTGS 193

[Close]

BLAST of HO067775 vs. TrEMBL
Match: B6UA93_MAIZE (RNA-binding post-transcriptional regulator csx1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.583e-22
Identity = 50/57 (87.72%), Postives = 55/57 (96.49%), Query Frame = 2

Query:   59 GAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPKKTTAS 229
            GAKVVTDPNTGRSKGYGFVKF+DE+E+NRAM+EMNGVYCSTRPMRISAA PKK+T S
Sbjct:  137 GAKVVTDPNTGRSKGYGFVKFADENEKNRAMTEMNGVYCSTRPMRISAAIPKKSTGS 193

[Close]

BLAST of HO067775 vs. TAIR peptide
Match: AT5G19350.2 (| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:6518978-6521295 FORWARD LENGTH=421)

HSP 1 Score: 103.99 bits (258), Expect = 2.013e-23
Identity = 48/53 (90.57%), Postives = 53/53 (100.00%), Query Frame = 2

Query:   59 GAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPKK 217
            GAKVVTDP+TGRSKGYGFVKF++ESERNRAM+EMNG+YCSTRPMRISAATPKK
Sbjct:  145 GAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKK 197

[Close]

BLAST of HO067775 vs. TAIR peptide
Match: AT5G19350.1 (| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:6518978-6521295 FORWARD LENGTH=425)

HSP 1 Score: 103.99 bits (258), Expect = 2.013e-23
Identity = 48/53 (90.57%), Postives = 53/53 (100.00%), Query Frame = 2

Query:   59 GAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPKK 217
            GAKVVTDP+TGRSKGYGFVKF++ESERNRAM+EMNG+YCSTRPMRISAATPKK
Sbjct:  145 GAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKK 197

[Close]

BLAST of HO067775 vs. TAIR peptide
Match: AT1G49600.1 (| Symbols: ATRBP47A, RBP47A | RNA-binding protein 47A | chr1:18357236-18360150 REVERSE LENGTH=445)

HSP 1 Score: 87.4261 bits (215), Expect = 1.950e-18
Identity = 39/56 (69.64%), Postives = 47/56 (83.93%), Query Frame = 2

Query:   59 GAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPKKTTA 226
            GAKVV D NTGRSKGYGFV+F DE+ER+RAM+EMNG +CS+R MR+  ATPK+  A
Sbjct:  242 GAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAAA 297

[Close]

BLAST of HO067775 vs. TAIR peptide
Match: AT3G19130.1 (| Symbols: ATRBP47B, RBP47B | RNA-binding protein 47B | chr3:6611398-6613823 REVERSE LENGTH=435)

HSP 1 Score: 85.1149 bits (209), Expect = 9.679e-18
Identity = 38/56 (67.86%), Postives = 46/56 (82.14%), Query Frame = 2

Query:   62 AKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPKKTTAS 229
            AKVV D NTGRSKGYGFV+F DE+ER+RA++EMNG YCS R MR+  ATPK+  A+
Sbjct:  232 AKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRAIAN 287

[Close]

BLAST of HO067775 vs. TAIR peptide
Match: AT1G47490.1 (| Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C | chr1:17424801-17427182 FORWARD LENGTH=432)

HSP 1 Score: 83.9593 bits (206), Expect = 2.156e-17
Identity = 39/53 (73.58%), Postives = 45/53 (84.91%), Query Frame = 2

Query:   62 AKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPKKT 220
            AKVV D NTGRSKGYGFV+F DE+ER +AM+EMNGV CS+R MRI  ATP+KT
Sbjct:  227 AKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKT 279

[Close]

BLAST of HO067775 vs. TAIR peptide
Match: AT1G47500.1 (| Symbols: ATRBP47C', RBP47C' | RNA-binding protein 47C' | chr1:17432682-17434805 FORWARD LENGTH=434)

HSP 1 Score: 83.9593 bits (206), Expect = 2.156e-17
Identity = 39/53 (73.58%), Postives = 45/53 (84.91%), Query Frame = 2

Query:   62 AKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPKKT 220
            AKVV D NTGRSKGYGFV+F DE+ER +AM+EMNGV CS+R MRI  ATP+KT
Sbjct:  229 AKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKT 281

[Close]

BLAST of HO067775 vs. TAIR peptide
Match: AT1G47490.2 (| Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C | chr1:17424801-17426114 FORWARD LENGTH=310)

HSP 1 Score: 83.9593 bits (206), Expect = 2.156e-17
Identity = 39/53 (73.58%), Postives = 45/53 (84.91%), Query Frame = 2

Query:   62 AKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPKKT 220
            AKVV D NTGRSKGYGFV+F DE+ER +AM+EMNGV CS+R MRI  ATP+KT
Sbjct:  227 AKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKT 279

[Close]

BLAST of HO067775 vs. TAIR peptide
Match: AT5G54900.1 (| Symbols: ATRBP45A, RBP45A | RNA-binding protein 45A | chr5:22295412-22298126 FORWARD LENGTH=387)

HSP 1 Score: 82.0333 bits (201), Expect = 8.194e-17
Identity = 41/71 (57.75%), Postives = 53/71 (74.65%), Query Frame = 2

Query:    2 SEIIFLNTLKNLSNNLVRGGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPK 214
            ++ +  +T KN+  ++   GAKVV D  TGRSKGYGFV+F+DE+E+ RAM+EMNG YCSTRPMRI  A  K
Sbjct:  166 TDYMLSDTFKNVYGSVK--GAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANK 234

[Close]

BLAST of HO067775 vs. TAIR peptide
Match: AT1G11650.1 (| Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:3914895-3917301 FORWARD LENGTH=306)

HSP 1 Score: 80.8777 bits (198), Expect = 1.825e-16
Identity = 40/53 (75.47%), Postives = 44/53 (83.02%), Query Frame = 2

Query:   59 GAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPKK 217
            GAKVV D  TGR+KGYGFV+FSDESE+ RAM+EMNGV CSTRPMRI  A  KK
Sbjct:  184 GAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKK 236

[Close]

BLAST of HO067775 vs. TAIR peptide
Match: AT1G11650.2 (| Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:3914895-3917941 FORWARD LENGTH=405)

HSP 1 Score: 80.8777 bits (198), Expect = 1.825e-16
Identity = 40/53 (75.47%), Postives = 44/53 (83.02%), Query Frame = 2

Query:   59 GAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPKK 217
            GAKVV D  TGR+KGYGFV+FSDESE+ RAM+EMNGV CSTRPMRI  A  KK
Sbjct:  184 GAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKK 236

The following BLAST results are available for this feature:

BLAST of HO067775 vs. SwissProt
BLAST of HO067775 vs. TrEMBL
BLAST of HO067775 vs. TAIR peptide

BLAST of HO067775 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
YG41_SCHPO	5.832e-11	52.94	Uncharacterized RNA-binding protein C23E6.01c OS=S...	[more]
CSX1_SCHPO	1.100e-9	52.94	RNA-binding post-transcriptional regulator csx1 OS...	[more]
TSAP1_MOUSE	2.709e-8	58.49	tRNA selenocysteine 1-associated protein 1 OS=Mus ...	[more]
RBM42_RAT	2.709e-8	55.56	RNA-binding protein 42 OS=Rattus norvegicus GN=Rbm...	[more]
RBM42_MOUSE	2.709e-8	55.56	RNA-binding protein 42 OS=Mus musculus GN=Rbm42 PE...	[more]
RBM42_HUMAN	2.709e-8	55.56	RNA-binding protein 42 OS=Homo sapiens GN=RBM42 PE...	[more]
RBM42_BOVIN	2.709e-8	55.56	RNA-binding protein 42 OS=Bos taurus GN=RBM42 PE=2...	[more]
NGR1_YEAST	3.538e-8	50.00	Negative growth regulatory protein NGR1 OS=Sacchar...	[more]
TSP1L_DANRE	6.035e-8	55.17	tRNA selenocysteine 1-associated protein 1-like OS...	[more]
RBM42_XENTR	6.035e-8	53.33	RNA-binding protein 42 OS=Xenopus tropicalis GN=rb...	[more]

BLAST of HO067775 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
D7SL59_VITVI	1.900e-23	59.00	Whole genome shotgun sequence of line PN40024, sca...	[more]
B9RIB9_RICCO	1.231e-22	57.00	Nuclear acid binding protein, putative OS=Ricinus ...	[more]
Q10R21_ORYSJ	2.743e-22	87.72	RNA recognition motif family protein, expressed OS...	[more]
Q0DUQ0_ORYSJ	2.743e-22	87.72	Os03g0174100 protein (Fragment) OS=Oryza sativa su...	[more]
B9HNV7_POPTR	2.743e-22	89.29	Predicted protein (Fragment) OS=Populus trichocarp...	[more]
B9FBL3_ORYSJ	2.743e-22	87.72	Putative uncharacterized protein OS=Oryza sativa s...	[more]
B8APB9_ORYSI	2.743e-22	87.72	Putative uncharacterized protein OS=Oryza sativa s...	[more]
C5WVW4_SORBI	3.583e-22	87.72	Putative uncharacterized protein Sb01g045570 OS=So...	[more]
C4IYK3_MAIZE	3.583e-22	87.72	Putative uncharacterized protein OS=Zea mays PE=2 ...	[more]
B6UA93_MAIZE	3.583e-22	87.72	RNA-binding post-transcriptional regulator csx1 OS...	[more]

BLAST of HO067775 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 10


Match Name	E-value	Identity	Description
AT5G19350.2	2.013e-23	90.57	\| Symbols: \| RNA-binding (RRM/RBD/RNP motifs) fam...	[more]
AT5G19350.1	2.013e-23	90.57	\| Symbols: \| RNA-binding (RRM/RBD/RNP motifs) fam...	[more]
AT1G49600.1	1.950e-18	69.64	\| Symbols: ATRBP47A, RBP47A \| RNA-binding protein ...	[more]
AT3G19130.1	9.679e-18	67.86	\| Symbols: ATRBP47B, RBP47B \| RNA-binding protein ...	[more]
AT1G47490.1	2.156e-17	73.58	\| Symbols: ATRBP47C, RBP47C \| RNA-binding protein ...	[more]
AT1G47500.1	2.156e-17	73.58	\| Symbols: ATRBP47C', RBP47C' \| RNA-binding protei...	[more]
AT1G47490.2	2.156e-17	73.58	\| Symbols: ATRBP47C, RBP47C \| RNA-binding protein ...	[more]
AT5G54900.1	8.194e-17	57.75	\| Symbols: ATRBP45A, RBP45A \| RNA-binding protein ...	[more]
AT1G11650.1	1.825e-16	75.47	\| Symbols: ATRBP45B, RBP45B \| RNA-binding (RRM/RBD...	[more]
AT1G11650.2	1.825e-16	75.47	\| Symbols: ATRBP45B, RBP45B \| RNA-binding (RRM/RBD...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 21..61 score: 1.6
IPR000504	RNA recognition motif domain	SMART	SM00360	no description	coord: 3..66 score: 0.
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 21..70 score: 10
IPR012677	Nucleotide-binding, alpha-beta plait	GENE3D	3.30.70.330	no description	coord: 21..73 score: 1.9
None	No IPR available	PANTHER	PTHR10432	RNA-BINDING PROTEIN	coord: 20..99 score: 4.1
None	No IPR available	PANTHER	PTHR10432:SF67	NUCLEAR ACID BINDING PROTEIN	coord: 20..99 score: 4.1
None	No IPR available	SEG	seg	seg	coord: 77..104 score
None	No IPR available	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 21..88 score: 1.5
None	No IPR available	SEG	seg	seg	coord: 5..42 score
None	No IPR available	SEG	seg	seg	coord: 25..36 score

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>HO067775 ID=HO067775; Name=HO067775; organism=Cicer arietinum; type=EST; length=358bp
AAGTGAAATTATATTTTTAAATACATTAAAAAATCTAAGTAACAATCTGG
TACGCGGGGGTGCTAAAGTTGTAACTGACCCTAATACTGGTCGTTCTAAG
GGTTATGGTTTTGTTAAATTTTCTGATGAGAGTGAAAGGAACCGTGCTAT
GTCTGAAATGAACGGTGTTTATTGTTCTACTAGGCCTATGCGTATTAGTG
CTGCTACACCTAAGAAAACTACTGCTAGTGTTGCTTATCAACAACCTTAT
GCTGCTGTTGCCGTTGCTGCTCCACCACCTGTTCCTAAAGCAATATATCC
TGTGCCGGCGTACACTGCCCCACTGAATACCATTCCACCGGAATATGATG
TAAACAAT

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

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