GR397288
EST Overview
Libraries
Unigenes
This EST is part of the following unigenes:
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of GR397288 vs. SwissProt
Match: SUCA_ORYSJ (Probable succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Oryza sativa subsp. japonica GN=Os07g0577700 PE=1 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 6.155e-29 Identity = 59/70 (84.29%), Postives = 68/70 (97.14%), Query Frame = -2 Query: 151 TEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIRTLREAGVTVVESPAKIGAAMFDIFKQKGLVQ 360 T+KP+VAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKI+ LREAGVTVVESPAKIG+ MF+IFKQ+G+++ Sbjct: 262 TQKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKALREAGVTVVESPAKIGSTMFEIFKQRGMLE 331
BLAST of GR397288 vs. SwissProt
Match: SUCA2_ARATH (Succinyl-CoA ligase [GDP-forming] subunit alpha-2, mitochondrial OS=Arabidopsis thaliana GN=At5g23250 PE=1 SV=2) HSP 1 Score: 124.79 bits (312), Expect = 1.371e-28 Identity = 58/71 (81.69%), Postives = 70/71 (98.59%), Query Frame = -2 Query: 151 GTEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIRTLREAGVTVVESPAKIGAAMFDIFKQKGLVQ 363 GT+KP+VAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKI++LR+AGV VVESPAKIGAAMF++F+++GL++ Sbjct: 271 GTDKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKSLRDAGVKVVESPAKIGAAMFELFQERGLLK 341
BLAST of GR397288 vs. SwissProt
Match: SUCA1_ARATH (Succinyl-CoA ligase [GDP-forming] subunit alpha-1, mitochondrial OS=Arabidopsis thaliana GN=At5g08300 PE=1 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 1.161e-27 Identity = 56/71 (78.87%), Postives = 69/71 (97.18%), Query Frame = -2 Query: 151 GTEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIRTLREAGVTVVESPAKIGAAMFDIFKQKGLVQ 363 GTEKP+VAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKI++L +AGV VVESPAKIG+AM+++F+++GL++ Sbjct: 276 GTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKSLNDAGVKVVESPAKIGSAMYELFQERGLLK 346
BLAST of GR397288 vs. SwissProt
Match: SUCA_CAEEL (Probable succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Caenorhabditis elegans GN=C05G5.4 PE=2 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 2.344e-20 Identity = 46/64 (71.88%), Postives = 53/64 (82.81%), Query Frame = -2 Query: 163 KPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIRTLREAGVTVVESPAKIGAAMFDIFKQK 354 KP+V+FIAG+TAPPGRRMGHAGAI+SGGKGTA DKI LREAGV V +SPAK+G +M F K Sbjct: 258 KPVVSFIAGVTAPPGRRMGHAGAIISGGKGTAADKINALREAGVVVTDSPAKLGTSMATAFLGK 321
BLAST of GR397288 vs. SwissProt
Match: SUCD_RICFE (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia felis GN=sucD PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 1.520e-19 Identity = 41/64 (64.06%), Postives = 54/64 (84.38%), Query Frame = -2 Query: 166 EKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIRTLREAGVTVVESPAKIGAAMFDIFKQ 357 +KPIV+FIAG+TAPPG+RMGHAGAI++GGKG+A+DK+ L+ AGVT+ SPA IG MFD+ + Sbjct: 228 KKPIVSFIAGITAPPGKRMGHAGAIIAGGKGSAEDKLEALQSAGVTITRSPADIGKTMFDLLNK 291
BLAST of GR397288 vs. SwissProt
Match: SUCD_RICBR (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia bellii (strain RML369-C) GN=sucD PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 9.850e-19 Identity = 40/61 (65.57%), Postives = 52/61 (85.25%), Query Frame = -2 Query: 175 EKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIRTLREAGVTVVESPAKIGAAMFDI 357 +KPIV+FIAG+TAPPG+RMGHAGAI++GGKG+A+DK+ L+ AGVT+ SPA IG M D+ Sbjct: 228 KKPIVSFIAGITAPPGKRMGHAGAIIAGGKGSAEDKLEALQSAGVTITRSPADIGKTMLDL 288
BLAST of GR397288 vs. SwissProt
Match: SUCA_DICDI (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=scsA PE=1 SV=3) HSP 1 Score: 90.1225 bits (222), Expect = 3.743e-18 Identity = 42/66 (63.64%), Postives = 51/66 (77.27%), Query Frame = -2 Query: 163 TEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIRTLREAGVTVVESPAKIGAAMFDIFKQK 360 T+KP+V+FIAGL+APPGRRMGHAGAI+SGGKG A KI L+ AGVTV SPAK+G + +K Sbjct: 247 TDKPVVSFIAGLSAPPGRRMGHAGAIISGGKGDANSKIEALKAAGVTVTFSPAKLGETILQKMNEK 312
BLAST of GR397288 vs. SwissProt
Match: SUCD_STAEQ (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=sucD PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 8.338e-18 Identity = 38/68 (55.88%), Postives = 52/68 (76.47%), Query Frame = -2 Query: 151 KPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIRTLREAGVTVVESPAKIGAAMFDIFKQKGLVQ 354 KP+V FI G TAPPG+RMGHAGAI+SGGKGTA +KI+TL + GV ++P++IG + D K+ G+ + Sbjct: 228 KPVVGFIGGQTAPPGKRMGHAGAIISGGKGTASEKIKTLNDCGVETADTPSEIGTTLIDAAKKAGIYE 295
BLAST of GR397288 vs. SwissProt
Match: SUCA_DROME (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Drosophila melanogaster GN=Scsalpha PE=2 SV=3) HSP 1 Score: 88.9669 bits (219), Expect = 8.338e-18 Identity = 43/67 (64.18%), Postives = 52/67 (77.61%), Query Frame = -2 Query: 154 KPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIRTLREAGVTVVESPAKIGAAMFDIFKQKGLV 354 KP+V+FIAG++APPGRRMGHAGAI+SGGKG A DKI L +AGV V SPAK+G +F K+ LV Sbjct: 262 KPVVSFIAGVSAPPGRRMGHAGAIISGGKGGANDKIAALEKAGVIVTRSPAKMGHELFKEMKRLELV 328
BLAST of GR397288 vs. SwissProt
Match: SUCD_STAES (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus epidermidis (strain ATCC 12228) GN=sucD PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 1.089e-17 Identity = 37/68 (54.41%), Postives = 52/68 (76.47%), Query Frame = -2 Query: 151 KPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIRTLREAGVTVVESPAKIGAAMFDIFKQKGLVQ 354 KP++ FI G TAPPG+RMGHAGAI+SGGKGTA +KI+TL + GV ++P++IG + D K+ G+ + Sbjct: 228 KPVIGFIGGQTAPPGKRMGHAGAIISGGKGTASEKIKTLNDCGVETADTPSEIGTTLIDAAKKAGIYE 295
BLAST of GR397288 vs. TrEMBL
Match: C6TNV4_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 6.045e-30 Identity = 65/71 (91.55%), Postives = 69/71 (97.18%), Query Frame = -2 Query: 151 GTEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIRTLREAGVTVVESPAKIGAAMFDIFKQKGLVQ 363 GTEKP+VAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKI+TLREAGV VVESPAKIGAAM D+FKQ+GLVQ Sbjct: 254 GTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVMVVESPAKIGAAMLDVFKQRGLVQ 324
BLAST of GR397288 vs. TrEMBL
Match: B9N355_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_827745 PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 3.919e-29 Identity = 63/69 (91.30%), Postives = 67/69 (97.10%), Query Frame = -2 Query: 157 GTEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIRTLREAGVTVVESPAKIGAAMFDIFKQKGL 363 GTEKP+VAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKI+TLREAGVTVVESPAKIG AM D+FKQ+GL Sbjct: 260 GTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGVAMLDVFKQRGL 328
BLAST of GR397288 vs. TrEMBL
Match: B9RL91_RICCO (Succinyl-CoA ligase [GDP-forming] subunit alpha-2, mitochondrial, putative OS=Ricinus communis GN=RCOM_1669400 PE=3 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 1.489e-28 Identity = 62/69 (89.86%), Postives = 67/69 (97.10%), Query Frame = -2 Query: 157 GTEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIRTLREAGVTVVESPAKIGAAMFDIFKQKGL 363 GT+KPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKI+TL+EAGVTVVESPAKIG AM D+FKQ+GL Sbjct: 264 GTDKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLKEAGVTVVESPAKIGVAMLDVFKQRGL 332
BLAST of GR397288 vs. TrEMBL
Match: B9RL90_RICCO (Succinyl-CoA ligase [GDP-forming] subunit alpha-2, mitochondrial, putative OS=Ricinus communis GN=RCOM_1669290 PE=3 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 1.489e-28 Identity = 62/69 (89.86%), Postives = 67/69 (97.10%), Query Frame = -2 Query: 157 GTEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIRTLREAGVTVVESPAKIGAAMFDIFKQKGL 363 GT+KPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKI+TL+EAGVTVVESPAKIG AM D+FKQ+GL Sbjct: 264 GTDKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLKEAGVTVVESPAKIGVAMLDVFKQRGL 332
BLAST of GR397288 vs. TrEMBL
Match: B9I4Z7_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_422788 PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 1.945e-28 Identity = 62/69 (89.86%), Postives = 66/69 (95.65%), Query Frame = -2 Query: 157 GTEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIRTLREAGVTVVESPAKIGAAMFDIFKQKGL 363 GTEKP+VAFIAG TAPPGRRMGHAGAIVSGGKGTAQDKI+TLREAGVTVVESPAKIG AM D+FKQ+GL Sbjct: 225 GTEKPVVAFIAGQTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGVAMLDVFKQRGL 293
BLAST of GR397288 vs. TrEMBL
Match: D7TEX3_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_42.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00026227001 PE=4 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 2.540e-28 Identity = 61/70 (87.14%), Postives = 66/70 (94.29%), Query Frame = -2 Query: 154 GTEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIRTLREAGVTVVESPAKIGAAMFDIFKQKGLV 363 GTEKP+VAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKI+TLR+ G TVVESPAKIG AM D+FKQ+GLV Sbjct: 259 GTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLRDVGATVVESPAKIGVAMLDVFKQRGLV 328
BLAST of GR397288 vs. TrEMBL
Match: D7TXP9_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_53.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00029337001 PE=4 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 5.658e-28 Identity = 62/69 (89.86%), Postives = 66/69 (95.65%), Query Frame = -2 Query: 154 TEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIRTLREAGVTVVESPAKIGAAMFDIFKQKGLV 360 TEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKI+TLREAGVTVVESPAK+G AM + FKQKGL+ Sbjct: 266 TEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKMGVAMLEAFKQKGLI 334
BLAST of GR397288 vs. TrEMBL
Match: B9H5Q8_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_831388 PE=3 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 7.390e-28 Identity = 60/70 (85.71%), Postives = 67/70 (95.71%), Query Frame = -2 Query: 154 GTEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIRTLREAGVTVVESPAKIGAAMFDIFKQKGLV 363 GTEKP+VAFIAG+TAPPGRRMGHAGAIVSGGKGTAQDKI+TLR+AGV VVESPAKIG AM D+FK++GLV Sbjct: 228 GTEKPVVAFIAGVTAPPGRRMGHAGAIVSGGKGTAQDKIKTLRDAGVIVVESPAKIGTAMLDVFKERGLV 297
BLAST of GR397288 vs. TrEMBL
Match: A9PFB5_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 7.390e-28 Identity = 60/70 (85.71%), Postives = 67/70 (95.71%), Query Frame = -2 Query: 154 GTEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIRTLREAGVTVVESPAKIGAAMFDIFKQKGLV 363 GTEKP+VAFIAG+TAPPGRRMGHAGAIVSGGKGTAQDKI+TLR+AGV VVESPAKIG AM D+FK++GLV Sbjct: 261 GTEKPVVAFIAGVTAPPGRRMGHAGAIVSGGKGTAQDKIKTLRDAGVIVVESPAKIGTAMLDVFKERGLV 330
BLAST of GR397288 vs. TrEMBL
Match: A9PDB9_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 7.390e-28 Identity = 60/70 (85.71%), Postives = 67/70 (95.71%), Query Frame = -2 Query: 154 GTEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIRTLREAGVTVVESPAKIGAAMFDIFKQKGLV 363 GTEKP+VAFIAG+TAPPGRRMGHAGAIVSGGKGTAQDKI+TLR+AGV VVESPAKIG AM D+FK++GLV Sbjct: 261 GTEKPVVAFIAGVTAPPGRRMGHAGAIVSGGKGTAQDKIKTLRDAGVIVVESPAKIGTAMLDVFKERGLV 330
BLAST of GR397288 vs. TAIR peptide
Match: AT5G23250.1 (| Symbols: | Succinyl-CoA ligase, alpha subunit | chr5:7830460-7832491 FORWARD LENGTH=341) HSP 1 Score: 124.79 bits (312), Expect = 1.171e-29 Identity = 58/71 (81.69%), Postives = 70/71 (98.59%), Query Frame = -2 Query: 151 GTEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIRTLREAGVTVVESPAKIGAAMFDIFKQKGLVQ 363 GT+KP+VAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKI++LR+AGV VVESPAKIGAAMF++F+++GL++ Sbjct: 271 GTDKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKSLRDAGVKVVESPAKIGAAMFELFQERGLLK 341
BLAST of GR397288 vs. TAIR peptide
Match: AT5G08300.1 (| Symbols: | Succinyl-CoA ligase, alpha subunit | chr5:2667579-2669672 FORWARD LENGTH=347) HSP 1 Score: 121.709 bits (304), Expect = 9.915e-29 Identity = 56/71 (78.87%), Postives = 69/71 (97.18%), Query Frame = -2 Query: 151 GTEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIRTLREAGVTVVESPAKIGAAMFDIFKQKGLVQ 363 GTEKP+VAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKI++L +AGV VVESPAKIG+AM+++F+++GL++ Sbjct: 276 GTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKSLNDAGVKVVESPAKIGSAMYELFQERGLLK 346
BLAST of GR397288 vs. TAIR peptide
Match: AT5G23250.2 (| Symbols: | Succinyl-CoA ligase, alpha subunit | chr5:7830460-7832265 FORWARD LENGTH=297) HSP 1 Score: 53.9138 bits (128), Expect = 2.539e-8 Identity = 23/25 (92.00%), Postives = 25/25 (100.00%), Query Frame = -2 Query: 289 GTEKPIVAFIAGLTAPPGRRMGHAG 363 GT+KP+VAFIAGLTAPPGRRMGHAG Sbjct: 271 GTDKPVVAFIAGLTAPPGRRMGHAG 295 The following BLAST results are available for this feature:
BLAST of GR397288 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot) Total hits: 10
BLAST of GR397288 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl) Total hits: 10
BLAST of GR397288 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide) Total hits: 3
InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >GR397288 ID=GR397288; Name=GR397288; organism=Cicer arietinum; type=EST; length=364bpback to top Annotated Terms
The
following terms have been associated with
this EST:
|