HO064259

EST Overview
NameHO064259
Unique NameHO064259
TypeEST
OrganismCicer arietinum (chickpea)
Sequence length691
Libraries
Library NameType
LIBEST_026411 Chickpea drought stressed cDNA SSH library AR2cdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1EST
Homology
BLAST of HO064259 vs. SwissProt
Match: DNLI4_ARATH (DNA ligase 4 OS=Arabidopsis thaliana GN=LIG4 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.621e-22
Identity = 69/208 (33.17%), Postives = 116/208 (55.77%), Query Frame = -2
Query:   43 KRFKLEVLMGGGKVTSNLNFATHVVALFLPSCH-NHEEIESSFTLVERKLLRSKRLHVVNSKWLEDCLKSSQRLSEDTYSLKPYGIEESTAEDCEHELAVDADLIKDNVEDQNISFSNKESKQSRAKAASGDSLALASQEKRGLRKRGRPAGRGIKKVKTDGNQARKARSQVAKKRAKLCEYESDESDSLDKKPYEQEADIAEGSLDF 663
            KR  LEVLM GGKV++NL  A+H+V L +     +   +  SF+ +E++LL  KRLHVV+S WLE+ L+  ++L ED Y+L+P  +EES  E+             D  E      +++ S Q++  A+S   +A+ S        RGR   R +K+ ++  N  ++ + +  K+ +K+   E++ESD+ ++K   + +DIAE +  F
Sbjct:  829 KRLMLEVLMAGGKVSNNLAHASHLVVLAMAEEPLDFTLVSKSFSEMEKRLLLKKRLHVVSSHWLEESLQREEKLCEDVYTLRPKYMEESDTEE------------SDKSEHDTTEVASQGSAQTKEPASS--KIAITS-------SRGRSNTRAVKRGRSSTNSLQRVQRRRGKQPSKISGDETEESDASEEKVSTRLSDIAEETDSF 1015          
BLAST of HO064259 vs. SwissProt
Match: DNLI4_ORYSJ (Putative DNA ligase 4 OS=Oryza sativa subsp. japonica GN=LIG4 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.190e-19
Identity = 62/190 (32.63%), Postives = 93/190 (48.95%), Query Frame = -2
Query:  103 LSLKRFKLEVLMGGGKVTSNLNFATHVVALFLPSCHNHEEIESSFTLVERKLLRSKRLHVVNSKWLEDCLKSSQRLSEDTYSLKPYGIEESTAEDCEHELAVDADLIKDNVEDQNISFSNKESKQSRAKAASGDSLALASQEKRGLRKRGRPAGRGIKKVKTDGNQARKARSQVAKKRAKLCEYESDESD 672
            L+LKR K ++ M GG+V S L  ATH++ + +   +N + +  S    ER+ L  KRL VV++KWLED ++   RL E TYSLKP  +EE   E  E  +    D +++N +                        A  S  K   RKRGRP+    +  K      R+ R++   + AK+ + E +ESD
Sbjct:  853 LALKRVKQDLTMHGGQVCSILAPATHLIIVSVLQAYNFDMLYKSLPPAERRYLHDKRLQVVSNKWLEDSVEKQTRLPETTYSLKPDTLEEIEIERSEETVQPCNDKLEENEK------------------------ADTSHVKHAPRKRGRPSSSASRTAKPAPRPVRRTRARRGNQHAKIDDVEPEESD 1018          
BLAST of HO064259 vs. TrEMBL
Match: D7SQI2_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_52.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00029314001 PE=4 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.961e-39
Identity = 95/200 (47.50%), Postives = 129/200 (64.50%), Query Frame = -2
Query:   79 LSLKRFKLEVLMGGGKVTSNLNFATHVVALFLPSCH-NHEEIESSFTLVERKLLRSKRLHVVNSKWLEDCLKSSQRLSEDTYSLKPYGIEESTAEDCEHELAVDADLIKDNVEDQN-ISFSNKESKQSRAKAASGDSLALASQEKRGLRKRGRPAGRGIKKVKTDGNQARKARSQVAKKRAKLCEYESDESDSLDKKPYE 672
            L+L+R KLEV MGGGKV +NL+ ATH+V   +P    +  +I  SF+  E+ LL +K+LHVV  +WLE CL+  +RL E  YSLKP G+EES   +C+H++ V+A  + D+VE+QN +SF +KE KQ R KA       LAS ++   RKRGRPAG   KK K   +QAR+ R ++ K   K+ E ESD SDS +K   E
Sbjct:  827 LALRRMKLEVSMGGGKVGNNLSQATHLVVFSVPGFDLDFSDIMESFSPAEKHLLCNKKLHVVGYQWLEGCLEEGRRLQEQKYSLKPEGLEESNFGECKHDIDVEAPSVLDSVENQNLVSFPDKEGKQGRGKAPPESISILASPKRDEKRKRGRPAGPSTKKGKAGFSQARRTRPRIGKP-PKIYENESDASDSGEKMEEE 1025          
BLAST of HO064259 vs. TrEMBL
Match: Q0PCF8_POPNI (DNA ligase OS=Populus nigra GN=PnLig4 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.030e-36
Identity = 89/214 (41.59%), Postives = 137/214 (64.02%), Query Frame = -2
Query:   40 LSLKRFKLEVLMGGGKVTSNLNFATHVVALFLPSCH-NHEEIESSFTLVERKLLRSKRLHVVNSKWLEDCLKSSQRLSEDTYSLKPYGIEESTAEDCEHELAVD-ADLIKDNVEDQNI-SFSNKESKQSRAKAASGDSLALASQEKRGLRKRGRPAGRGIKKVKTDGNQARKARSQVAKKRAKLCEYESDESDSLDKKPYEQEADIAEGSLDFY 672
            L+ +R KLE+ MGGGKV++N+  ATH+V L +P+   +   +  SFT  E+  L +KRL+V+ S+WLED L+  Q+L EDTY+LKP G+EES  ++   +L ++ A  I D  +++ + S ++ E+K+  +KAA  DS  L S EK   RKRGRPAG   KK K    QA++ R+++  K AK+   +SDES S D K   +E D+++G+ + +
Sbjct:  835 LAFRRLKLEIFMGGGKVSNNIAHATHLVVLNVPASDVDFGSLVKSFTTAEKHFLLNKRLYVIGSQWLEDSLERGQKLLEDTYNLKPSGLEESNCKEIVCDLDMEEATPISDGAKNERLPSVTDSEAKEKGSKAALKDSNKLGSLEKETTRKRGRPAGGSTKKGKIGAGQAQRTRARIVNKPAKISVEKSDESCSQDDK--NEENDMSDGNEEIH 1046          
BLAST of HO064259 vs. TrEMBL
Match: B9IN68_POPTR (DNA ligase OS=Populus trichocarpa GN=POPTRDRAFT_911613 PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.481e-34
Identity = 88/212 (41.51%), Postives = 128/212 (60.38%), Query Frame = -2
Query:   40 LSLKRFKLEVLMGGGKVTSNLNFATHVVALFLPSCH-NHEEIESSFTLVERKLLRSKRLHVVNSKWLEDCLKSSQRLSEDTYSLKPYGIEESTAEDCEHELAVDADLIKDNVEDQNISFSNKESKQSRAKAASGDSLALASQEKRGLRKRGRPAGRGIKKVKTDGNQARKARSQVAKKRAKLCEYESDESDSLDKKPYEQEADIAEGSLDFY 672
            L+ +R KLE+ MGGGKV++N+  ATH+V L +P+   +   +  SFT  E+  L +KRL+V+ S+WLED L+  Q+L EDTY+LKP G+EES   +C+  L                S ++ E+K+  +KAA  DS  L S EK   RKRGRPAG   KK K    QAR+ R+++  K AK+   +SDES S D K   +E D+++G+ + +
Sbjct:  835 LAFRRLKLEIFMGGGKVSNNIAHATHLVVLIVPASDVDFGSLVKSFTTAEKHFLLNKRLYVIGSQWLEDSLERGQKLLEDTYNLKPSGLEES---NCKEVLP---------------SVTDSEAKEKGSKAALKDSNKLGSLEKETTRKRGRPAGGSTKKGKIGAGQARRTRARIVNKPAKISVEKSDESCSHDDK--NEENDMSDGNEEIH 1026          
BLAST of HO064259 vs. TrEMBL
Match: D7MMS2_ARALY (ATLIG4 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_495812 PE=4 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.779e-23
Identity = 68/208 (32.69%), Postives = 115/208 (55.29%), Query Frame = -2
Query:   43 KRFKLEVLMGGGKVTSNLNFATHVVALFLPSCH-NHEEIESSFTLVERKLLRSKRLHVVNSKWLEDCLKSSQRLSEDTYSLKPYGIEESTAEDCEHELAVDADLIKDNVEDQNISFSNKESKQSRAKAASGDSLALASQEKRGLRKRGRPAGRGIKKVKTDGNQARKARSQVAKKRAKLCEYESDESDSLDKKPYEQEADIAEGSLDF 663
            KR  LEVLMGGGKV++NL  A+H+V L +     +   +  SF+ +E++LL  KRLHVV+S+WLED L+  ++L ED Y+L+P  +EES  E+             D  E      +++ S Q+   ++S  ++            RGR   R +K+ ++  N  ++ + +  K+ +K+   E++ESD+ ++K   + +DIAE +  F
Sbjct:  831 KRLALEVLMGGGKVSNNLAHASHLVVLTMAEKSLDFASVSKSFSEMEKRLLLKKRLHVVSSRWLEDSLQREEKLCEDVYNLRPKYMEESDTEE------------SDKSEHDTTEVASEGSAQTEEPSSSKMTIT---------SSRGRSTTRAVKRGRSSTNSLQRVQRRRGKQPSKITGDETEESDAAEEKVSTRLSDIAEETDSF 1017          
BLAST of HO064259 vs. TrEMBL
Match: Q01KE4_ORYSA (DNA ligase OS=Oryza sativa GN=OSIGBa0113I13.3 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.255e-18
Identity = 62/190 (32.63%), Postives = 93/190 (48.95%), Query Frame = -2
Query:  103 LSLKRFKLEVLMGGGKVTSNLNFATHVVALFLPSCHNHEEIESSFTLVERKLLRSKRLHVVNSKWLEDCLKSSQRLSEDTYSLKPYGIEESTAEDCEHELAVDADLIKDNVEDQNISFSNKESKQSRAKAASGDSLALASQEKRGLRKRGRPAGRGIKKVKTDGNQARKARSQVAKKRAKLCEYESDESD 672
            L+LKR K ++ M GG+V S L  ATH++ + +   +N + +  S    ER+ L  KRL VV++KWLED ++   RL E TYSLKP  +EE   E  E  +    D +++N +                        A  S  K   RKRGRP+    +  K      R+ R++   + AK+ + E +ESD
Sbjct:  812 LALKRVKQDLTMHGGQVCSILAPATHLIIVSVLQAYNFDMLYKSLPPAERRYLHDKRLQVVSNKWLEDSVEKQTRLPETTYSLKPDTLEEIEIERSEETVQPCNDKLEENEK------------------------ADTSHVKHAPRKRGRPSSSASRTAKPAPRPVRRTRARRGNQHAKIDDVEPEESD 977          
BLAST of HO064259 vs. TrEMBL
Match: B9FCD0_ORYSJ (DNA ligase OS=Oryza sativa subsp. japonica GN=OsJ_16077 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.255e-18
Identity = 62/190 (32.63%), Postives = 93/190 (48.95%), Query Frame = -2
Query:  103 LSLKRFKLEVLMGGGKVTSNLNFATHVVALFLPSCHNHEEIESSFTLVERKLLRSKRLHVVNSKWLEDCLKSSQRLSEDTYSLKPYGIEESTAEDCEHELAVDADLIKDNVEDQNISFSNKESKQSRAKAASGDSLALASQEKRGLRKRGRPAGRGIKKVKTDGNQARKARSQVAKKRAKLCEYESDESD 672
            L+LKR K ++ M GG+V S L  ATH++ + +   +N + +  S    ER+ L  KRL VV++KWLED ++   RL E TYSLKP  +EE   E  E  +    D +++N +                        A  S  K   RKRGRP+    +  K      R+ R++   + AK+ + E +ESD
Sbjct:  853 LALKRVKQDLTMHGGQVCSILAPATHLIIVSVLQAYNFDMLYKSLPPAERRYLHDKRLQVVSNKWLEDSVEKQTRLPETTYSLKPDTLEEIEIERSEETVQPCNDKLEENEK------------------------ADTSHVKHAPRKRGRPSSSASRTAKPAPRPVRRTRARRGNQHAKIDDVEPEESD 1018          
BLAST of HO064259 vs. TrEMBL
Match: B8ATU5_ORYSI (DNA ligase OS=Oryza sativa subsp. indica GN=OsI_17298 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.255e-18
Identity = 62/190 (32.63%), Postives = 93/190 (48.95%), Query Frame = -2
Query:  103 LSLKRFKLEVLMGGGKVTSNLNFATHVVALFLPSCHNHEEIESSFTLVERKLLRSKRLHVVNSKWLEDCLKSSQRLSEDTYSLKPYGIEESTAEDCEHELAVDADLIKDNVEDQNISFSNKESKQSRAKAASGDSLALASQEKRGLRKRGRPAGRGIKKVKTDGNQARKARSQVAKKRAKLCEYESDESD 672
            L+LKR K ++ M GG+V S L  ATH++ + +   +N + +  S    ER+ L  KRL VV++KWLED ++   RL E TYSLKP  +EE   E  E  +    D +++N +                        A  S  K   RKRGRP+    +  K      R+ R++   + AK+ + E +ESD
Sbjct:  853 LALKRVKQDLTMHGGQVCSILAPATHLIIVSVLQAYNFDMLYKSLPPAERRYLHDKRLQVVSNKWLEDSVEKQTRLPETTYSLKPDTLEEIEIERSEETVQPCNDKLEENEK------------------------ADTSHVKHAPRKRGRPSSSASRTAKPAPRPVRRTRARRGNQHAKIDDVEPEESD 1018          
BLAST of HO064259 vs. TrEMBL
Match: C5YFJ3_SORBI (DNA ligase OS=Sorghum bicolor GN=Sb06g027820 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.047e-16
Identity = 58/194 (29.90%), Postives = 98/194 (50.52%), Query Frame = -2
Query:   94 LSLKRFKLEVLMGGGKVTSNLNFATHVVALFLPSCHNHEEIESSFTLVERKLLRSKRLHVVNSKWLEDCLKSSQRLSEDTYSLKPYGIEESTAEDCEHELAVDADLIKDNVEDQNISFSNKESKQSRAKAASGDSLALASQEKRGLRKRGRPAGRGIKKVK-TDGNQARKARSQVAKKRAKLCEYESDESDSLD 672
            L+LKR K ++ M GG+V S++  ATH+V + +   +N + +  SF   ER+ L  KRLHVV++KWLED ++   +LSE  YSLKP  +EE   E  E  +      ++++ E +     N   K++R  ++                +  R A R +++++   GNQ  K    V  + +   E + D++   D
Sbjct:  774 LALKRVKQDLTMHGGQVCSSIAPATHLVVVSVLQAYNFDNLYKSFPPAERRYLHDKRLHVVSNKWLEDSVEKQMKLSETAYSLKPDTLEELEIERSEENVQPPDHKLEEHREVERSHAKNVPRKRTRPTSS----------------RTARAAPRPVRRMRPRRGNQKAKIGDDVESEESGPSECQDDQNLDTD 951          
BLAST of HO064259 vs. TAIR peptide
Match: AT5G57160.1 (| Symbols: ATLIG4, LIG4 | DNA ligase IV | chr5:23155150-23161688 REVERSE LENGTH=1219)

HSP 1 Score: 106.301 bits (264), Expect = 1.634e-23
Identity = 69/208 (33.17%), Postives = 116/208 (55.77%), Query Frame = -2
Query:   43 KRFKLEVLMGGGKVTSNLNFATHVVALFLPSCH-NHEEIESSFTLVERKLLRSKRLHVVNSKWLEDCLKSSQRLSEDTYSLKPYGIEESTAEDCEHELAVDADLIKDNVEDQNISFSNKESKQSRAKAASGDSLALASQEKRGLRKRGRPAGRGIKKVKTDGNQARKARSQVAKKRAKLCEYESDESDSLDKKPYEQEADIAEGSLDF 663
            KR  LEVLM GGKV++NL  A+H+V L +     +   +  SF+ +E++LL  KRLHVV+S WLE+ L+  ++L ED Y+L+P  +EES  E+             D  E      +++ S Q++  A+S   +A+ S        RGR   R +K+ ++  N  ++ + +  K+ +K+   E++ESD+ ++K   + +DIAE +  F
Sbjct:  829 KRLMLEVLMAGGKVSNNLAHASHLVVLAMAEEPLDFTLVSKSFSEMEKRLLLKKRLHVVSSHWLEESLQREEKLCEDVYTLRPKYMEESDTEE------------SDKSEHDTTEVASQGSAQTKEPASS--KIAITS-------SRGRSNTRAVKRGRSSTNSLQRVQRRRGKQPSKISGDETEESDASEEKVSTRLSDIAEETDSF 1015          
The following BLAST results are available for this feature:
BLAST of HO064259 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 2
Match NameE-valueIdentityDescription
DNLI4_ARATH1.621e-2233.17DNA ligase 4 OS=Arabidopsis thaliana GN=LIG4 PE=1 ... [more]
DNLI4_ORYSJ2.190e-1932.63Putative DNA ligase 4 OS=Oryza sativa subsp. japon... [more]
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BLAST of HO064259 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 8
Match NameE-valueIdentityDescription
D7SQI2_VITVI1.961e-3947.50Whole genome shotgun sequence of line PN40024, sca... [more]
Q0PCF8_POPNI2.030e-3641.59DNA ligase OS=Populus nigra GN=PnLig4 PE=2 SV=1[more]
B9IN68_POPTR2.481e-3441.51DNA ligase OS=Populus trichocarpa GN=POPTRDRAFT_91... [more]
D7MMS2_ARALY9.779e-2332.69ATLIG4 OS=Arabidopsis lyrata subsp. lyrata GN=ARAL... [more]
Q01KE4_ORYSA3.255e-1832.63DNA ligase OS=Oryza sativa GN=OSIGBa0113I13.3 PE=3... [more]
B9FCD0_ORYSJ3.255e-1832.63DNA ligase OS=Oryza sativa subsp. japonica GN=OsJ_... [more]
B8ATU5_ORYSI3.255e-1832.63DNA ligase OS=Oryza sativa subsp. indica GN=OsI_17... [more]
C5YFJ3_SORBI1.047e-1629.90DNA ligase OS=Sorghum bicolor GN=Sb06g027820 PE=3 ... [more]
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BLAST of HO064259 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT5G57160.11.634e-2333.17| Symbols: ATLIG4, LIG4 | DNA ligase IV | chr5:231... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 18..28
score: NAcoord: 84..91
score: NAcoord: 106..118
score
NoneNo IPR availableSEGsegsegcoord: 37..46
score
NoneNo IPR availableGENE3D3.40.50.10190no descriptioncoord: 19..97
score: 7.1
NoneNo IPR availablePANTHERPTHR13561DNA REPLICATION REGULATOR DPB11-RELATEDcoord: 60..105
score: 0.0
NoneNo IPR availablePANTHERPTHR13561:SF5DNA REPLICATION REGULATOR DPB11coord: 60..105
score: 0.0
IPR001357BRCTPROFILEPS50172BRCTcoord: 20..89
score: 11
IPR001357BRCTSUPERFAMILY52113BRCT domaincoord: 8..95
score: 3.9

Properties
Property NameValue
Singlet in analysisCicer arietinum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>HO064259 ID=HO064259; Name=HO064259; organism=Cicer arietinum; type=EST; length=691bp
ATGAGTTTTCTCAGTCTCATGTGGTTCTGAATGTTCATTGTAAAAATCAA
GACTTCCTTCAGCAATGTCAGCCTCTTGCTCATATGGTTTTTTATCGAGA
GAATCACTTTCATCTGATTCATATTCACATAATTTTGCACGCTTTTTCGC
GACTTGCGATCGTGCTTTTCGAGCTTGGTTTCCGTCTGTTTTCACTTTTT
TAATACCTCTTCCTGCAGGTCTTCCTCGTTTCCTTAGGCCACGCTTCTCT
TGGGATGCCAAAGCCAAACTGTCTCCAGAAGCAGCTTTTGCCCTACTCTG
TTTACTTTCCTTGTTAGAGAAAGATATATTTTGGTCTTCCACATTATCTT
TAATCAGATCAGCATCTACCGCCAATTCATGTTCACAATCCTCGGCAGTT
GACTCTTCTATTCCATAGGGCTTCAAGCTATAAGTGTCTTCTGATAATCT
TTGGCTACTCTTCAAACAATCCTCTAACCACTTGGAGTTAACTACATGCA
ACCTCTTGCTTCGAAGAAGTTTTCTCTCAACTAAAGTAAAACTACTCTCT
ATTTCTTCATGGTTATGACAACTTGGTAGGAACAAGGCCACTACATGAGT
TGCAAAATTGAGGTTAGAGGTGACCTTTCCACCACCCATGAGAACTTCAA
GCTTGAATCTCTTCAAAGAAAGTACCTGCCCGGCGGCCGCT
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular anatomical structure
Vocabulary: INTERPRO
TermDefinition
IPR001357BRCT_dom