SSR302, SSR302 (genetic_marker) Lens culinaris

Marker Overview
NameSSR302
AliasSSR302B
SSR302A
Genbank IDN/A
TypeSSR
SpeciesLens culinaris
Repeat Motif(TA)15(CA)11
Primer 1SSR302.Forward Primer: CAAGCCACCCATACACC
Primer 2SSR302.Reverse Primer: GGGCATTAAGTGTGCTGG
Max Length219
Publication[view all]
ContactMichael Baum
Harsh Dikshit
Sukhjiwan Kaur
Abhishek Bohra
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
Forward PrimerSSR302.Forward PrimerLens culinarisprimer
Reverse PrimerSSR302.Reverse PrimerLens culinarisprimer


This genetic_marker is located in the following QTL feature(s):

Feature NameUnique NameSpeciesType
Days to 50% floweringqDFTFL.EstonxPI320937.LG1.SPG04Lens culinarisQTL


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
SSR302SSR302Lens culinarismarker_locus
SSR302ASSR302ALens culinarismarker_locus
SSR302BSSR302BLens culinarismarker_locus


Publications
YearPublication
2005Hamwieh A, Udupa SM, Choumane W, Sarker A, Dreyer F, Jung C, Baum M. A genetic linkage map of Lens sp. based on microsatellite and AFLP markers and the localization of fusarium vascular wilt resistance. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 2005 Feb; 110(4):669-77.
2016Idrissi O, Udupa M, De Keyser E, Van Damme P, De Riek J. Functional Genetic Diversity Analysis and Identification of Associated Simple Sequence Repeats and Amplified Fragment Length Polymorphism Markers to Drought Tolerance in Lentil (Lens culinaris ssp. culinaris Medicus) Landraces. Plant Molecular Biology Reporter. 2016; 2016(34):659-680.
2017Singh A, Sharma V, Dikshit HK, Aski M, Kumar H, Thirunavukkarasu N, Patil BS, Kumar S, Sarker A. Association mapping unveils favorable alleles for grain iron and zinc concentrations in lentil (Lens culinaris subsp. culinaris). PloS one. 2017; 12(11):e0188296.
2016Sudheesh S, Rodda MS, Davidson J, Javid M, Stephens A, Slater AT, Cogan NO, Forster JW, Kaur S. SNP-Based Linkage Mapping for Validation of QTLs for Resistance to Ascochyta Blight in Lentil. Frontiers in plant science. 2016; 7:1604.
2017Jha R, Bohra A, Jha UC, Rana M, Chahota RK, Kumar S, Sharma TR. Analysis of an intraspecific RIL population uncovers genomic segments harbouring multiple QTL for seed relevant traits in lentil (Lens culinaris L.). Physiology and molecular biology of plants : an international journal of functional plant biology. 2017 Jul; 23(3):675-684.
Contact
NameDetails
Michael Baum
First name:Michael
Last name:Baum
Institution:International Centre for Agricultural Research in the Dry Areas
Address:ICARDA, PO Box 5466, Aleppo, Syria
Country:Syria
Email:M.Baum@cgiar.org
Harsh Dikshit
First name:Harsh
Last name:Dikshit
Title:Researcher
Institution:Indian Agricultural Research Institute
Address:Division of Genetics, Indian Agricultural Research Institute, New Delhi 110012, India
Country:India
Email:harshgeneticsiari@gmail.com
Sukhjiwan Kaur
First name:Sukhjiwan
Last name:Kaur
Title:Researcher
Institution:La Trobe University
Address:Biosciences Research, Agriculture Victoria, AgriBio, La Trobe University, Bundoora, VIC, Australia
Country:Australia
Email:sukhjiwan.kaur@ecodev.vic.gov.au
Abhishek Bohra
First name:Abhishek
Last name:Bohra
Title:Researcher
Institution:Indian Institute of Pulses Research
Address:Crop Improvement DivisionIndian Institute of Pulses ResearchKanpurIndia
Country:India
Email:abhi.omics@gmail.com
Last update:Mar 2017
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1lentil-EstonxPI320937-F8-RILLG1N/A360.9SSR302View
2lentil-ILL5588xILL5722-F5-RILLGIVN/A63.5SSR302View
3lentil-ILL5588xILL5722-F5-RIL-2012LGIIIN/A9.3SSR302View
4lentil-PrecozxL830-RILLG1N/A60.7SSR302View
5Lentil_Precoz_x_L830_RILLG1N/A60.7SSR302View
6Lentil-Consensus-RIL-2016LG2N/A322.45SSR302View
7Lentil- Northfield_x_Digger-RIL-2016LG2.2N/A70.4SSR302View
8Lentil-WA864909_x_Precoz-RIL-2017LG3N/A7.1SSR302View
9lentil-ILL5588xL692-16-1-RILLG1N/A25SSR302AView
10lentil-ILL5588xL692-16-1-RILLG4N/A58.1SSR302BView