Vfaba.Hedin2.R1.1g034000.1
|
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Vfaba.Hedin2.R1.1g034000.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2XEH2|A0A1S2XEH2_CICAR (uncharacterized protein LOC101504301 OS=Cicer arietinum OX=3827 GN=LOC101504301 PE=4 SV=1) HSP 1 Score: 251.136 bits (640), Expect = 2.157e-82 Identity = 140/187 (74.87%), Postives = 158/187 (84.49%), Query Frame = 0 Query: 1 MSK--LSSTLTNLKFMQRAAAREEKIEKVEQ---EVKL-DTSTISRRCVVIVEGDPHPGAFKGRMSFQSFNPKVDKLNEEEVGLNQPVAKTSISKNKNANVSVRENNSSGEGTEHDNTSEKSPEVNGNVKRKQSEVINEQHYPNKSPKNNQGNKPSSSNNGLGSFKKPSVDKLDWNVLRSSGVKQNR 181
MSK LS+TL NLKFMQRAA +E+KIEK E+ + L TST+S++CVVIVEGDP PGA KGRMSFQSFNP VDKLNEEEV L+QPVA+T+IS+N+NANVSVRENNSS EGTE N ++ S EVN NVKRKQSEVI+E YPNKSPKN+QGN+ SSSNN LGSFKKPS DKLDWNVLRSS VKQNR
Sbjct: 1 MSKRELSNTLKNLKFMQRAALKEDKIEKEEEVKPDFSLGSTSTVSKKCVVIVEGDPRPGALKGRMSFQSFNPSVDKLNEEEVKLHQPVAETTISRNQNANVSVRENNSSAEGTERANMNQNSHEVNANVKRKQSEVIHEAQYPNKSPKNDQGNRQSSSNNSLGSFKKPSGDKLDWNVLRSSSVKQNR 187
BLAST of Vfaba.Hedin2.R1.1g034000.1 vs. UniProtKB/TrEMBL
Match: tr|G7IRV6|G7IRV6_MEDTR (M-phase phosphoprotein OS=Medicago truncatula OX=3880 GN=11417386 PE=4 SV=1) HSP 1 Score: 239.965 bits (611), Expect = 5.583e-78 Identity = 145/183 (79.23%), Postives = 156/183 (85.25%), Query Frame = 0 Query: 4 LSSTLTNLKFMQRAAAREEKIEKVEQEVKLDTS-----TISRRCVVIVEGDPHPGAFKGRMSFQSFNPKVDKLNEEEVGLNQPVAKTSISKNKNANVSVRENNSSGEGTEHDNTSEKSPEVNGNVKRKQSEVINEQHYPNKSPKNNQGNKPSSSNNGLGSFKKPSVDKLDWNVLRSSGVKQNR 181
LSS L NLKFMQRAAAREEK+EKVE+EVK D S TISR+CVVIVEGDPHPGAFKGRMSFQSFNP VDKLNEEEV L+QPVAKTSIS N+NANVSVRENNSS EG+E + ++KS EVNGN KRKQ E NE YPNKSP N+QGNK SSSNNGLGSFKKPS DKLDWNVLRSS V+QNR
Sbjct: 6 LSSVLKNLKFMQRAAAREEKVEKVEEEVKHDVSFGSTPTISRKCVVIVEGDPHPGAFKGRMSFQSFNPTVDKLNEEEVKLSQPVAKTSISSNQNANVSVRENNSSAEGSESASVNKKSYEVNGNGKRKQCE-DNEAQYPNKSPNNDQGNKKSSSNNGLGSFKKPSGDKLDWNVLRSSSVRQNR 187
BLAST of Vfaba.Hedin2.R1.1g034000.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9UP29|A0A0L9UP29_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan05g190900 PE=4 SV=1) HSP 1 Score: 230.72 bits (587), Expect = 2.789e-74 Identity = 118/184 (64.13%), Postives = 145/184 (78.80%), Query Frame = 0 Query: 4 LSSTLTNLKFMQRAAAREEKIEKVEQEVKLDTS------TISRRCVVIVEGDPHPGAFKGRMSFQSFNPKVDKLNEEEVGLNQPVAKTSISKNKNANVSVRENNSSGEGTEHDNTSEKSPEVNGNVKRKQSEVINEQHYPNKSPKNNQGNKPSSSNNGLGSFKKPSVDKLDWNVLRSSGVKQNR 181
LSSTL NLKFMQRAA REEK ++ E+++K D S T++R+CVVI+EGDPHPGA KGRMSFQSFNP VDKLNEEE L QP A+T++S+N+NA+VSVRENN S E E N ++K+ EVNGNVKRKQSEV++E YPNKSPK++ +K S ++ LG+FKKP DKLDWNVLR S V Q+R
Sbjct: 6 LSSTLKNLKFMQRAAVREEKTKR-EEDIKPDVSIITTPTTVTRKCVVIMEGDPHPGALKGRMSFQSFNPSVDKLNEEEARLRQPAAETTVSRNQNASVSVRENNFSVESPESVNVNKKNVEVNGNVKRKQSEVVSEAQYPNKSPKSDHDDKKSLPSSSLGTFKKPGGDKLDWNVLRPSSVNQSR 188
BLAST of Vfaba.Hedin2.R1.1g034000.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445GNR8|A0A445GNR8_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_039878 PE=4 SV=1) HSP 1 Score: 227.639 bits (579), Expect = 4.115e-73 Identity = 122/182 (67.03%), Postives = 145/182 (79.67%), Query Frame = 0 Query: 4 LSSTLTNLKFMQRAAAREEKIEK---VEQEVKLDTST-ISRRCVVIVEGDPHPGAFKGRMSFQSFNPKVDKLNEEEVGLNQPVAKTSISKNKNANVSVRENNSSGEGTEHDNTSEKSPEVNGNVKRKQSEVINEQHYPNKSPKNNQGNKPSSSNNGLGSFKKPSVDKLDWNVLRSSGVKQNR 181
LSSTL NLKFMQRAA REEK +K + +V + TST ++R+CVVI+EGDPHPGA KGRMSFQSFNP VDKLNEEE L+QP A+T++S+N+NAN+++REN+SS EG E N +KS EVNGNVKRKQSEVI E YPNKSPKN+ +K S NN LG+ KKPS DKLDW VLR S VKQ+R
Sbjct: 6 LSSTLKNLKFMQRAALREEKTKKEEEIRPDVSVGTSTAVTRKCVVIMEGDPHPGAPKGRMSFQSFNPSVDKLNEEEARLHQPAAETTMSRNQNANINIRENSSSVEGPECANMDKKSVEVNGNVKRKQSEVICEAQYPNKSPKNDHDDKQSLPNNSLGTLKKPSGDKLDWKVLRPSSVKQSR 187
BLAST of Vfaba.Hedin2.R1.1g034000.1 vs. UniProtKB/TrEMBL
Match: tr|I1MDD8|I1MDD8_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_15G036800 PE=4 SV=1) HSP 1 Score: 227.639 bits (579), Expect = 4.115e-73 Identity = 122/182 (67.03%), Postives = 145/182 (79.67%), Query Frame = 0 Query: 4 LSSTLTNLKFMQRAAAREEKIEK---VEQEVKLDTST-ISRRCVVIVEGDPHPGAFKGRMSFQSFNPKVDKLNEEEVGLNQPVAKTSISKNKNANVSVRENNSSGEGTEHDNTSEKSPEVNGNVKRKQSEVINEQHYPNKSPKNNQGNKPSSSNNGLGSFKKPSVDKLDWNVLRSSGVKQNR 181
LSSTL NLKFMQRAA REEK +K + +V + TST ++R+CVVI+EGDPHPGA KGRMSFQSFNP VDKLNEEE L+QP A+T++S+N+NAN+++REN+SS EG E N +KS EVNGNVKRKQSEVI E YPNKSPKN+ +K S NN LG+ KKPS DKLDW VLR S VKQ+R
Sbjct: 6 LSSTLKNLKFMQRAALREEKTKKEEEIRPDVSVGTSTAVTRKCVVIMEGDPHPGAPKGRMSFQSFNPSVDKLNEEEARLHQPAAETTMSRNQNANINIRENSSSVEGPECANMDKKSVEVNGNVKRKQSEVICEAQYPNKSPKNDHDDKQSLPNNSLGTLKKPSGDKLDWKVLRPSSVKQSR 187
BLAST of Vfaba.Hedin2.R1.1g034000.1 vs. UniProtKB/TrEMBL
Match: tr|C6T1U1|C6T1U1_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 PE=2 SV=1) HSP 1 Score: 226.098 bits (575), Expect = 2.124e-72 Identity = 121/182 (66.48%), Postives = 144/182 (79.12%), Query Frame = 0 Query: 4 LSSTLTNLKFMQRAAAREEKIEK---VEQEVKLDTST-ISRRCVVIVEGDPHPGAFKGRMSFQSFNPKVDKLNEEEVGLNQPVAKTSISKNKNANVSVRENNSSGEGTEHDNTSEKSPEVNGNVKRKQSEVINEQHYPNKSPKNNQGNKPSSSNNGLGSFKKPSVDKLDWNVLRSSGVKQNR 181
LSSTL NLKFMQRAA REEK +K + +V + TST ++R+CVVI+EGDPHPGA KGRM FQSFNP VDKLNEEE L+QP A+T++S+N+NAN+++REN+SS EG E N +KS EVNGNVKRKQSEVI E YPNKSPKN+ +K S NN LG+ KKPS DKLDW VLR S VKQ+R
Sbjct: 6 LSSTLKNLKFMQRAALREEKTKKEEEIRPDVSVGTSTAVTRKCVVIMEGDPHPGAPKGRMPFQSFNPSVDKLNEEEARLHQPAAETTMSRNQNANINIRENSSSVEGPECANMDKKSVEVNGNVKRKQSEVICEAQYPNKSPKNDHDDKQSLPNNSLGTLKKPSGDKLDWKVLRPSSVKQSR 187
BLAST of Vfaba.Hedin2.R1.1g034000.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6LMX2|A0A2Z6LMX2_TRISU (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_110290 PE=4 SV=1) HSP 1 Score: 225.328 bits (573), Expect = 3.794e-72 Identity = 140/184 (76.09%), Postives = 152/184 (82.61%), Query Frame = 0 Query: 4 LSSTLTNLKFMQRAAAREEKIEKVEQEVKLDTS-----TISRRCVVIVEGDPHPGAFKGRMSFQSFNPKVDKLNEEEVGLNQPVAKTSISKNKNANVSVRENNSSGEGTEHDNTSEKSPEVNGNVKRKQSEVINEQHYPNKSPKNNQGNKPSSSNNGLGSFKK-PSVDKLDWNVLRSSGVKQNR 181
LSS L NLKFMQRAAAREEK EKVE+EVK D S T+SR+CVVIVEGDP PGAFKGRMSFQSFNP VDKLNEEEV LNQPVAKT+IS N+NANVSVREN SS EGT+ ++KS EVNGN KR Q+EV NE YPNKSPKN+QGNK SS ++ LGSFKK PS DKLDWNVLRSS VKQNR
Sbjct: 6 LSSVLKNLKFMQRAAAREEKPEKVEEEVKHDASFGSIPTVSRKCVVIVEGDPRPGAFKGRMSFQSFNPTVDKLNEEEVRLNQPVAKTTISSNQNANVSVRENTSSAEGTDSAKRNKKSYEVNGNGKRIQNEV-NEAQYPNKSPKNDQGNKHSSPSSSLGSFKKPPSGDKLDWNVLRSSSVKQNR 188
BLAST of Vfaba.Hedin2.R1.1g034000.1 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6N5Y1|A0A4D6N5Y1_VIGUN (M-phase phosphoprotein 6 OS=Vigna unguiculata OX=3917 GN=DEO72_LG10g432 PE=4 SV=1) HSP 1 Score: 224.942 bits (572), Expect = 4.670e-72 Identity = 116/184 (63.04%), Postives = 142/184 (77.17%), Query Frame = 0 Query: 4 LSSTLTNLKFMQRAAAREEKIEKVEQEVKLDTS------TISRRCVVIVEGDPHPGAFKGRMSFQSFNPKVDKLNEEEVGLNQPVAKTSISKNKNANVSVRENNSSGEGTEHDNTSEKSPEVNGNVKRKQSEVINEQHYPNKSPKNNQGNKPSSSNNGLGSFKKPSVDKLDWNVLRSSGVKQNR 181
LS+TL NLKFMQRAA REEK ++ +E+K D S T++R+CVVI+EGDPHPGA KGRMSFQSFNP VDKLNEEE L QP A+T++S+N+N +VSVRENN S E E N ++K+ E NGNVKRKQSEV++E YPNKSPKN+ +K S ++ LG+FKKP DKLDWNVLR S V Q+R
Sbjct: 6 LSNTLKNLKFMQRAAVREEKTKR--EEIKPDVSIVTTPTTVTRKCVVIMEGDPHPGALKGRMSFQSFNPSVDKLNEEEARLRQPAAETTVSRNQNESVSVRENNFSVESPESVNVNKKNVEANGNVKRKQSEVVSEAQYPNKSPKNDHDDKQSVPSSSLGTFKKPGGDKLDWNVLRPSRVNQSR 187
BLAST of Vfaba.Hedin2.R1.1g034000.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3MP54|A0A2K3MP54_TRIPR (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g015727 PE=4 SV=1) HSP 1 Score: 223.787 bits (569), Expect = 1.895e-71 Identity = 140/184 (76.09%), Postives = 152/184 (82.61%), Query Frame = 0 Query: 4 LSSTLTNLKFMQRAAAREEKIEKVEQEVKLDTS-----TISRRCVVIVEGDPHPGAFKGRMSFQSFNPKVDKLNEEEVGLNQPVAKTSISKNKNANVSVRENNSSGEGTEHDNTSEKSPEVNGNVKRKQSEVINEQHYPNKSPKNNQGNKPSSSNNGLGSFKK-PSVDKLDWNVLRSSGVKQNR 181
LSS L NLKFMQRAAAREEK EKVE+EVK D S T+SR+CVVIVEGDP PGAFKGRMSFQSFNP VDKLNEEEV LNQPVAKT+IS N+NANVSVREN SS EGT+ N ++KS EVNGN KR QSE NE YPNKSPKN+QGNK SS ++ LGSFKK PS DKL+WNVLRSS VKQNR
Sbjct: 6 LSSVLKNLKFMQRAAAREEKPEKVEEEVKHDASFGSTPTVSRKCVVIVEGDPRPGAFKGRMSFQSFNPTVDKLNEEEVRLNQPVAKTTISSNQNANVSVRENTSSAEGTDSANKNKKSNEVNGNGKRIQSEG-NEAQYPNKSPKNDQGNKHSSPSSSLGSFKKPPSGDKLNWNVLRSSSVKQNR 188
BLAST of Vfaba.Hedin2.R1.1g034000.1 vs. UniProtKB/TrEMBL
Match: tr|I3RZB3|I3RZB3_LOTJA (Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1) HSP 1 Score: 219.55 bits (558), Expect = 5.816e-70 Identity = 121/183 (66.12%), Postives = 144/183 (78.69%), Query Frame = 0 Query: 3 KLSSTLTNLKFMQRAAAREEKIEKVEQ--EVKLDTST--ISRRCVVIVEGDPHPGAFKGRMSFQSFNPKVDKLNEEEVGLNQPVAKTSISKNKNANVSVRENNSSGEGTEHDNTSEKSPEVNGNVKRKQSEVINEQHYPNKSPKNNQGNKPSSSNNGLGSFKKPSVDKLDWNVLRSSGVKQNR 181
+LS+TL NLKFMQR A +EEK +K E +V ST I+R+CVV++EGDPHPGA KGRMSFQSFNP VDKLNEEE L QP +T+ISKN+NAN S+REN+SS EGTE +T+++S +VNGNVKRKQSEVI+E YPNKSPKN G SSS N LGSF+KP+ DKLDWNVLR S +K NR
Sbjct: 5 ELSNTLKNLKFMQRGAPKEEKPKKEEVKPDVSFGASTPLITRKCVVVMEGDPHPGAVKGRMSFQSFNPSVDKLNEEEARLRQPATETNISKNQNANSSLRENSSSVEGTESADTNQRSHDVNGNVKRKQSEVIHEAPYPNKSPKNEHG---SSSKNSLGSFRKPTGDKLDWNVLRQSSIKHNR 184
BLAST of Vfaba.Hedin2.R1.1g034000.1 vs. Araport11
Match: AT5G59460.1 (| scarecrow-like transcription factor 11 (SCL11) | Chr5:23976968-23978291 REVERSE LENGTH=172 | 201606) HSP 1 Score: 117.087 bits (292), Expect = 2.251e-33 Identity = 78/174 (44.83%), Postives = 105/174 (60.34%), Query Frame = 0 Query: 4 LSSTLTNLKFMQRAAAREEKIEKVEQEVK---LDTSTISRRCVVIVEGDPHPGAFKGRMSFQSFNPKVDKLNEEEVGLNQPVAKTSISKNKNANVSVRENNSSGEGTEHDNTSEKSPEVNGNVKRKQSEVIN-EQHYPNKSPKNNQGNKPSSSNNGLGSFKKPSVDKLDWNVLR 173
+SSTL NLKFMQR++ + EK + E+E T++++CVVI + DP PGA GRMSFQSFNP ++KL+EE + S S + S E SS E S E +G++KRKQSEV++ EQ+ PNKSP++ +KPS SN FKKP K+DW+VLR
Sbjct: 6 ISSTLRNLKFMQRSSLKVEKKKADEEEPNGSFPSLRTVAKKCVVITDWDPQPGALLGRMSFQSFNPSIEKLHEEAIN----GGNPSSSSSNGGKKSFSEPESS--------KVEPSGETDGDLKRKQSEVVSEEQNRPNKSPRS--FDKPSPSNKKGNGFKKPKSKKVDWSVLR 165
BLAST of Vfaba.Hedin2.R1.1g034000.1 vs. Araport11
Match: AT5G59460.2 (| scarecrow-like transcription factor 11 (SCL11) | Chr5:23977334-23978291 REVERSE LENGTH=128 | 201606) HSP 1 Score: 78.9518 bits (193), Expect = 4.609e-19 Identity = 39/77 (50.65%), Postives = 55/77 (71.43%), Query Frame = 0 Query: 3 KLSSTLTNLKFMQRAAAREEKIEKVEQE---VKLDTSTISRRCVVIVEGDPHPGAFKGRMSFQSFNPKVDKLNEEEV 76
++SSTL NLKFMQR++ + EK + E+E T++++CVVI + DP PGA GRMSFQSFNP ++KL+EE +
Sbjct: 5 EISSTLRNLKFMQRSSLKVEKKKADEEEPNGSFPSLRTVAKKCVVITDWDPQPGALLGRMSFQSFNPSIEKLHEEAI 81 The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.1g034000.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of Vfaba.Hedin2.R1.1g034000.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of Vfaba.Hedin2.R1.1g034000.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11) Total hits: 2 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vfaba.Hedin2.R1.1g034000.1_vfh_v1 ID=Vfaba.Hedin2.R1.1g034000.1_vfh_v1; Name=Vfaba.Hedin2.R1.1g034000.1; organism=Vicia faba; type=mRNA; length=546bpback to top protein sequence of Vfaba.Hedin2.R1.1g034000.1_vfh_v1 >Vfaba.Hedin2.R1.1g034000.1_vfh_v1 ID=Vfaba.Hedin2.R1.1g034000.1_vfh_v1; Name=Vfaba.Hedin2.R1.1g034000.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=181bpback to top mRNA from alignment at chr1S:216655382..216656833- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>Vfaba.Hedin2.R1.1g034000.1_vfh_v1 ID=Vfaba.Hedin2.R1.1g034000.1_vfh_v1; Name=Vfaba.Hedin2.R1.1g034000.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr1S:216655382..216656833- (Vicia fababack to top Annotated Terms
The
following terms have been associated with
this mRNA:
|