Vfaba.Hedin2.R1.1g057320.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Vfaba.Hedin2.R1.1g057320.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6M597|A0A2Z6M597_TRISU (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_105930 PE=4 SV=1) HSP 1 Score: 205.297 bits (521), Expect = 3.224e-64 Identity = 102/184 (55.43%), Postives = 139/184 (75.54%), Query Frame = 0 Query: 1 MVSKNLKICLSVSAIILIAISTITVALIFTVFKLRDPNIILNISRFDFPTPG-STNISIPVLIIIKNSNYGNFKYIDSISYITYRDTLVGTVPIPSQLVPARRGINVTTHANFMVEELTENPKFSVDIQNGTKFSLMSKAELPGKVIILSFIKMKAMATNQCDISVNIASHDVLSNCISHIKIY 183 M KNLK+CL VSAI I +S IT+ALIFTVFK DPNI+++I+ ++F +P + NI++P+++ + N N+G+FK+ + SYI YR+T+VG VPI S LVP R +NV+THANFMV +L ENP F + G KF+L+SKAELPGKVIIL IK+K+M TN C+ISVN+ S+ V SNC S +K++ Sbjct: 1 MAKKNLKVCLGVSAIFFIIVSIITIALIFTVFKPTDPNIVVHIAPYNFLSPDIAPNITLPLVVTMGNPNFGSFKFNNGFSYILYRETIVGIVPIGSHLVPPRSALNVSTHANFMVGKLIENPNFLIQDLPGMKFTLVSKAELPGKVIILKLIKVKSMVTNLCEISVNMTSNHVESNCQSKLKMF 184
BLAST of Vfaba.Hedin2.R1.1g057320.1 vs. UniProtKB/TrEMBL
Match: tr|G7IKJ5|G7IKJ5_MEDTR (Late embryogenesis abundant hydroxyproline-rich glycoprotein OS=Medicago truncatula OX=3880 GN=11419066 PE=4 SV=1) HSP 1 Score: 181.415 bits (459), Expect = 8.294e-55 Identity = 97/186 (52.15%), Postives = 130/186 (69.89%), Query Frame = 0 Query: 1 MVSKNLKICLSVSAIILIAISTITVALIFTVFKLRDPNIILNISRFDFPTPGSTNI-SIPVLIIIKNSNYGNFKYIDSISYITYRDTLVGTVPIPSQLVPARRGINVTTHANFMVEELTENPKFSVDIQNGTKFSLMSKAELPGKVIILSFIKMKAMATNQCDISVNIA--SHDVLSNCISHIKIY 183 M LKICLSVSA++ I +S +T+ALIFTVFK +DPNI++++ D +P I +I L+ I N N+G+F++ S SY+TY DT+VGTVPI SQLVPA INV+T+ V +L NP F ++ G KF+L+SKAE PGKVI+L +IK+K A N C+I+VN+A SHDV S C S IKI+ Sbjct: 1 MAKSRLKICLSVSAMLFIIVSIVTIALIFTVFKPKDPNIVVHVEPVDLLSPDMPIIMNISTLVTIGNPNFGSFEFKKSYSYVTYHDTVVGTVPIESQLVPAHSEINVSTYTLMTVNKLINNPDFWKEVVPGYKFTLISKAEFPGKVIVLKYIKLKGTAYNTCNITVNMAPGSHDVKSICNSQIKIH 186
BLAST of Vfaba.Hedin2.R1.1g057320.1 vs. UniProtKB/TrEMBL
Match: tr|G7IKJ1|G7IKJ1_MEDTR (Late embryogenesis abundant protein OS=Medicago truncatula OX=3880 GN=11414727 PE=4 SV=1) HSP 1 Score: 174.096 bits (440), Expect = 6.546e-52 Identity = 94/186 (50.54%), Postives = 125/186 (67.20%), Query Frame = 0 Query: 1 MVSKNLKICLSVSAIILIAISTITVALIFTVFKLRDPNIILNISRFDFPTPGST-NISIPVLIIIKNSNYGNFKYIDSISYITYRDTLVGTVPIPSQLVPARRGINVTTHANFMVEELTENPKFSVD-IQNGTKFSLMSKAELPGKVIILSFIKMKAMATNQCDISVNIASHDVLSNCISHIKIYH 184 M + LKICL VS + LI IS +T+ LI T+FK +DP I N ++F+F + T N+++ ++I I N NY FKY +SISYI Y DT+VG VPI SQLVPAR INVTT A+ MV +L +NP+F D + N + S ELPGK I+L +IK+KA+ CDISVNI S+ SNC S IK+++ Sbjct: 1 MAKRGLKICLIVSTLFLIIISIVTLTLILTIFKPKDPTIRANFAQFNFLSANITMNMTLGMVITIVNPNYAGFKYQNSISYINYHDTIVGNVPIESQLVPARSEINVTTSADLMVGKLLQNPQFWKDMVHNRMIINFTSTTELPGKAILLKYIKLKAITYCSCDISVNITSNGADSNCKSRIKLFY 186
BLAST of Vfaba.Hedin2.R1.1g057320.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3EAQ0|A0A1S3EAQ0_CICAR (uncharacterized protein LOC105852373 OS=Cicer arietinum OX=3827 GN=LOC105852373 PE=4 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 6.048e-51 Identity = 88/177 (49.72%), Postives = 127/177 (71.75%), Query Frame = 0 Query: 6 LKICLSVSAIILIAISTITVALIFTVFKLRDPNIILNISRFDFPTPG-STNISIPVLIIIKNSNYGNFKYIDSISYITYRDTLVGTVPIPSQLVPARRGINVTTHANFMVEELTENPKFSVDIQNGTKFSLMSKAELPGKVIILSFIKMKAMATNQCDISVNIASHDVLSNCISHIK 181 +++CLS +A+ +I +S + V LIFTVFK +DP + ++S DF +P N+++ V++ I N N+G+F+Y SI YI+YRD +VG+VP+ + L+PAR INVTT A+FM+ +L NP F +D+ G KF+L S A+LPGK IIL+FIK+KA + N C ISVN+ S DV S CIS +K Sbjct: 4 VRVCLSGAALSVIVVSIVIVTLIFTVFKPKDPIVTFHLSHVDFLSPTLPLNLTLGVMMTIANRNFGSFQYESSIGYISYRDIMVGSVPLEAALIPARSEINVTTKAHFMIGKLLHNPNFWMDVVPGMKFNLTSTAQLPGKAIILNFIKVKAKSYNNCQISVNMTSSDVQSYCISKLK 180
BLAST of Vfaba.Hedin2.R1.1g057320.1 vs. UniProtKB/TrEMBL
Match: tr|A0A076KXB3|A0A076KXB3_CICAR (Late embryogenesis abundant protein OS=Cicer arietinum OX=3827 GN=LOC101490975 PE=4 SV=1) HSP 1 Score: 171.014 bits (432), Expect = 9.560e-51 Identity = 95/181 (52.49%), Postives = 128/181 (70.72%), Query Frame = 0 Query: 2 VSKNLKICLSVSAIILIAISTITVALIFTVFKLRDPNIILNISRFDFPTPG-STNISIPVLIIIKNSNYGNFKYIDSISYITYRDTLVGTVPIPSQLVPARRGINVTTHANFMVEELTENPKFSVDIQNGTKFSLMSKAELPGKVIILSFIKMKAMATNQCDISVNIASHDVLSNCISHIK 181 +++ +++CLSV+A+ +I +S + V LIFTVFK +DP + L++S DF +P N+++ +++ I N N+G+FKY SI YI YRD VG+VPI + LVPAR INVTT+A+FMV L NP F D+ G KF+L S AELPGK IIL FIK+KA A N C ISVN+ S DV S CIS +K Sbjct: 1 MARGVRVCLSVAAVSVIVVSIVIVTLIFTVFKPKDPIVTLHLSHVDFLSPTLPLNMTLGMMMTIANRNFGSFKYESSIGYIRYRDVTVGSVPIEAALVPARSEINVTTNAHFMVGVLLHNPNFWTDVVPGMKFNLTSTAELPGKAIILKFIKVKAKAYNNCQISVNMTSSDVQSYCISKLK 181
BLAST of Vfaba.Hedin2.R1.1g057320.1 vs. UniProtKB/TrEMBL
Match: tr|I1M432|I1M432_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100807939 PE=4 SV=2) HSP 1 Score: 157.532 bits (397), Expect = 2.484e-45 Identity = 87/187 (46.52%), Postives = 120/187 (64.17%), Query Frame = 0 Query: 1 MVSKNLKICLSVSAIILIAISTITVALIFTVFKLRDPNIILNISRFDFPTPG-----STNISIPVLIIIKNSNYGNFKYIDSISYITYRDTLVGTVPIPSQLVPARRGINVTTHANFMVEELTENPKFSVDIQNGTKFSLMSKAELPGKVIILSFIKMKAMATNQCDISVNIASHDVLSNCISHIKI 182 M S+ LKICL++S + LI ++ + VAL FT+F+ +DPNII++ F+ P + N+S+ +LI I+NSNY NF+Y ++ YI + DT+VG VPI +LVP R INV T ANFMV +L +P F D +G + S A LPGK +L IK KA + CDIS+NI S +V S CIS IK+ Sbjct: 1 MASRGLKICLAMSLLFLIIVAIVIVALFFTIFRPKDPNIIVHPVGFENFNPSLLTNVTANVSLGMLITIENSNYENFEYPNATGYIKFHDTVVGQVPIVGELVPPRSQINVNTSANFMVAKLINDPNFLSDFLSGI-VNFTSTASLPGKAHMLKIIKFKATVYSSCDISLNITSRNVDSKCISKIKL 186
BLAST of Vfaba.Hedin2.R1.1g057320.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6P4BDJ6|A0A6P4BDJ6_ARADU (uncharacterized protein LOC107461939 OS=Arachis duranensis OX=130453 GN=LOC107461939 PE=4 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 7.297e-45 Identity = 90/191 (47.12%), Postives = 126/191 (65.97%), Query Frame = 0 Query: 1 MVSKNLKICLSVSAIILIAISTITVALIFTVFKLRDPNIILNISRFDFPTPGS---TNIS----IPVLIIIKNSNYGNFKYIDSISYITYRDTLVGTVPIPSQLVPARRGINVTTHANFMVEELTENPKFSVDIQNGTKFSLMSKAELPGKVIILSFIKMKAMATNQCDISVNIASH--DVLSNCISHIKI 182 MVSK LKIC+SVSA+ LI + + VALIFTVFK++DP + ++ PGS TN+S IP LI I N NYG+F+ ++S ++ Y +V +P+ S +PAR IN++++A F V ++ E+PKF +DI +GT + S A +PGKVIIL FIKMKA + CDIS+ I S+ V SNC++ IKI Sbjct: 1 MVSKKLKICMSVSALFLIIVIAVIVALIFTVFKIKDPVVTVH----PIIGPGSLSVTNLSSSVFIPTLITITNPNYGDFRSVNSTGHVNYDGNVVADIPLASNFIPARSQINISSNAEFNVAKMIEDPKFLLDIASGT-LNFTSDAVMPGKVIILKFIKMKATTHSSCDISLGIVSNRVHVESNCVTKIKI 186
BLAST of Vfaba.Hedin2.R1.1g057320.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445BXD8|A0A445BXD8_ARAHY (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A08g039635 PE=4 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 1.840e-44 Identity = 89/191 (46.60%), Postives = 126/191 (65.97%), Query Frame = 0 Query: 1 MVSKNLKICLSVSAIILIAISTITVALIFTVFKLRDPNIILNISRFDFPTPGS---TNIS----IPVLIIIKNSNYGNFKYIDSISYITYRDTLVGTVPIPSQLVPARRGINVTTHANFMVEELTENPKFSVDIQNGTKFSLMSKAELPGKVIILSFIKMKAMATNQCDISVNIASH--DVLSNCISHIKI 182 MVS+ LKIC+SVSA+ LI + + VALIFTVFK++DP + ++ PGS TN+S IP LI I N NYG+F+ ++S ++ Y +V +P+ S +PAR IN++++A F V ++ E+PKF +DI +GT + S A +PGKVIIL FIKMKA + CDIS+ I S+ V SNC++ IKI Sbjct: 1 MVSRKLKICMSVSALFLIIVIAVIVALIFTVFKIKDPVVTVH----PIIGPGSLSVTNLSSSVFIPTLITITNPNYGDFRSVNSTGHVNYDGNVVADIPLASNFIPARSQINISSNAEFNVAKMIEDPKFLLDIASGT-LNFTSDAVMPGKVIILKFIKMKATTHSSCDISLGIVSNRVHVESNCVTKIKI 186
BLAST of Vfaba.Hedin2.R1.1g057320.1 vs. UniProtKB/TrEMBL
Match: tr|A0A444Y6T8|A0A444Y6T8_ARAHY (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B08g093738 PE=4 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 4.640e-44 Identity = 86/191 (45.03%), Postives = 125/191 (65.45%), Query Frame = 0 Query: 1 MVSKNLKICLSVSAIILIAISTITVALIFTVFKLRDPNIILNISRFDFPTPGS-------TNISIPVLIIIKNSNYGNFKYIDSISYITYRDTLVGTVPIPSQLVPARRGINVTTHANFMVEELTENPKFSVDIQNGTKFSLMSKAELPGKVIILSFIKMKAMATNQCDISVNIASH--DVLSNCISHIKI 182 MVSK LK+C+SVSA+ LI + + VALIFTVFK++DP + ++ PGS +N+ IP LI I N NYG+F+ ++S ++ Y +V +P+ S +PAR IN++++A F V ++ E+PKF +DI +GT + S A +PGKVIIL FIKMKA + CDIS+ + S+ V SNC++ IKI Sbjct: 1 MVSKKLKLCMSVSALFLIIVIAVIVALIFTVFKIKDPVVTVH----PIIGPGSLSLTNLSSNVFIPTLITISNPNYGDFRSVNSTGHVNYDGYVVADIPLVSNFIPARSQINISSNAEFNVTKMIEDPKFLLDIASGT-LNFTSDAVMPGKVIILKFIKMKATTHSSCDISLGVVSNRVHVESNCVTKIKI 186
BLAST of Vfaba.Hedin2.R1.1g057320.1 vs. UniProtKB/TrEMBL
Match: tr|I1M433|I1M433_SOYBN (LEA_2 domain-containing protein OS=Glycine max OX=3847 GN=GLYMA_13G307900 PE=4 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 7.764e-43 Identity = 84/187 (44.92%), Postives = 123/187 (65.78%), Query Frame = 0 Query: 1 MVSKNLKICLSVSAIILIAISTITVALIFTVFKLRDPNIILN-ISRFDFPTPGSTNISIPV----LIIIKNSNYGNFKYIDSISYITYRDTLVGTVPIPSQLVPARRGINVTTHANFMVEELTENPKFSVDIQNGTKFSLMSKAELPGKVIILSFIKMKAMATNQCDISVNIASHDVLSNCISHIKI 182 M S+ LKICL+VS ++LI + V L T+FK ++P I ++ + DF + S N+++ V +I I+N NYG+F+YI+S SY+ + DT+V VPI ++LVPAR INV T A+FMV +L +P F D+ GT + S LPGK +L+ IK+KA + + CDISVNI+S +V +NC S IK+ Sbjct: 1 MASRGLKICLAVSLLLLIIFTIAIVTLFMTIFKPKNPEITVHPVGLEDFQSSFSPNLTLNVTLGMIITIRNPNYGSFQYINSTSYVKFHDTVVAEVPIEAELVPARSQINVNTSADFMVAKLINDPNFLSDVLGGT-LNFTSTIALPGKARMLNIIKLKATSYSTCDISVNISSRNVDTNCKSKIKL 186
BLAST of Vfaba.Hedin2.R1.1g057320.1 vs. Araport11
Match: AT2G46150.1 (| Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | Chr2:18961424-18962089 FORWARD LENGTH=221 | 201606) HSP 1 Score: 73.559 bits (179), Expect = 4.539e-16 Identity = 53/174 (30.46%), Postives = 91/174 (52.30%), Query Frame = 0 Query: 8 ICLSVSAIILIAISTITVALIFTVFKLRDPNIILN---ISRFDFPTPG------STNISIPVLIIIKNSNYGNFKYIDSISYITYRDTLVGTV-PIPSQLVPARRG-INVTTHANFMVEELTENPKFSVDIQNGTKFSLMSKAELPGKVIILSFIKMKAMATNQCDISVNIASH 170 IC++ +++IL +TI + L+FTVF+++DP I +N ++ D T TNIS+ V + +KN N +FKY ++ + I Y+ TLVG +P + P R +NVT + M++ + +P +I ++ S + GKV I+ +K C ++VNI Sbjct: 40 ICVTATSLIL---TTIVLTLVFTVFRVKDPIIKMNGVMVNGLDSVTGTNQVQLLGTNISMIVDVSVKNPNTASFKYSNTTTDIYYKGTLVGEAHGLPGKARPHRTSRMNVT--VDIMLDRILSDPGLGREISRSGLVNVWSYTRVGGKVKIMGIVKKHVTVKMNCTMAVNITGQ 208
BLAST of Vfaba.Hedin2.R1.1g057320.1 vs. Araport11
Match: AT3G05975.1 (| Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | Chr3:1792145-1792714 REVERSE LENGTH=189 | 201606) HSP 1 Score: 62.3882 bits (150), Expect = 3.564e-12 Identity = 51/176 (28.98%), Postives = 88/176 (50.00%), Query Frame = 0 Query: 7 KICLSVSAIILIAISTITVALIFT-VFKLRDPNIILNISRFDFPTPG-STNISIP----------VLIIIKNSNYGNFKYIDSISYITYRDTLVGTVPIPSQLVPARRGINVTTHANFMVEELTENPKFSV-DIQNGTKFSLMSKAELPGKVIILSFIKMKAMATNQCDISVNIAS 169 +IC VS II + ALI VFK + P + S D G STNIS+P + +++KN N +F+Y + + YRDTLVG + +PS +PA+ + + +++ N V D+ +G K + ++A++PGK+ +L K+ + + C++ + S Sbjct: 5 RICCIVSGIIFVLFVIFMTALILAQVFKPKHPILQTVSSTVD----GISTNISLPYEVQLNFTLTLEMLLKNPNVADFEYKTVENLVYYRDTLVGNLTLPSSTLPAKGSVLLPCPLFLQLDKFVANLGDIVQDVLHG-KIVMETRAKMPGKITLLGIFKIPLDSISHCNLVLGFPS 175 The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.1g057320.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL) Total hits: 10
BLAST of Vfaba.Hedin2.R1.1g057320.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot) Total hits: 0
BLAST of Vfaba.Hedin2.R1.1g057320.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11) Total hits: 2
InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vfaba.Hedin2.R1.1g057320.1_vfh_v1 ID=Vfaba.Hedin2.R1.1g057320.1_vfh_v1; Name=Vfaba.Hedin2.R1.1g057320.1; organism=Vicia faba; type=mRNA; length=555bpback to top protein sequence of Vfaba.Hedin2.R1.1g057320.1_vfh_v1 >Vfaba.Hedin2.R1.1g057320.1_vfh_v1 ID=Vfaba.Hedin2.R1.1g057320.1_vfh_v1; Name=Vfaba.Hedin2.R1.1g057320.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=184bpback to top mRNA from alignment at chr1S:361588699..361589253+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>Vfaba.Hedin2.R1.1g057320.1_vfh_v1 ID=Vfaba.Hedin2.R1.1g057320.1_vfh_v1; Name=Vfaba.Hedin2.R1.1g057320.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr1S:361588699..361589253+ (Vicia fababack to top |