Vfaba.Hedin2.R1.1g072000.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Vfaba.Hedin2.R1.1g072000.1 vs. UniProtKB/TrEMBL
Match: tr|A0A392QES7|A0A392QES7_9FABA (Conserved oligomeric Golgi complex subunit 6 (Fragment) OS=Trifolium medium OX=97028 PE=3 SV=1) HSP 1 Score: 204.142 bits (518), Expect = 4.253e-65 Identity = 100/114 (87.72%), Postives = 103/114 (90.35%), Query Frame = 0 Query: 1 MIDNHLRVLVEKEVDTILSRCNLSEKMPHLRNSIHKDGDDEVGTPLAELEDTSPAVISECLKALLGLILGSEISLPEFEQIQVPKLHSEASIGVARSLGEAYELIYKAIMDPKK 114 MIDNHLRVLV+KE D ILSRCNLSEKMPH SI+KDGD EVGTPLAELEDTSPAV+SECLKAL GLILGSE SLPEFEQIQVP L SEASIGVARSLGEAYELIYKAIMDPK Sbjct: 43 MIDNHLRVLVDKEADAILSRCNLSEKMPHFHKSINKDGDSEVGTPLAELEDTSPAVLSECLKALFGLILGSESSLPEFEQIQVPSLRSEASIGVARSLGEAYELIYKAIMDPKN 156
BLAST of Vfaba.Hedin2.R1.1g072000.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9VL25|A0A0L9VL25_PHAAN (Conserved oligomeric Golgi complex subunit 6 OS=Phaseolus angularis OX=3914 GN=LR48_Vigan10g131600 PE=3 SV=1) HSP 1 Score: 194.897 bits (494), Expect = 1.528e-61 Identity = 94/113 (83.19%), Postives = 103/113 (91.15%), Query Frame = 0 Query: 1 MIDNHLRVLVEKEVDTILSRCNLSEKMPHLRNSIHKDGDDEVGTPLAELEDTSPAVISECLKALLGLILGSEISLPEFEQIQVPKLHSEASIGVARSLGEAYELIYKAIMDPK 113 MIDNHLRVLVEKE + IL RCNLSEKM L+NSIHK+G++EVGTPLAE EDTSPA++SECLKAL GLILGSE SLPEFEQ+QVP+L SEASIGVARSL EAYELIYKAIMDPK Sbjct: 1 MIDNHLRVLVEKEAEAILRRCNLSEKMRLLQNSIHKEGENEVGTPLAEREDTSPAILSECLKALFGLILGSESSLPEFEQMQVPRLRSEASIGVARSLAEAYELIYKAIMDPK 113
BLAST of Vfaba.Hedin2.R1.1g072000.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3P795|A0A2K3P795_TRIPR (Conserved oligomeric Golgi complex subunit 6 (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g007766 PE=3 SV=1) HSP 1 Score: 202.216 bits (513), Expect = 3.758e-61 Identity = 98/114 (85.96%), Postives = 102/114 (89.47%), Query Frame = 0 Query: 1 MIDNHLRVLVEKEVDTILSRCNLSEKMPHLRNSIHKDGDDEVGTPLAELEDTSPAVISECLKALLGLILGSEISLPEFEQIQVPKLHSEASIGVARSLGEAYELIYKAIMDPKK 114 MIDNHLRVLV+KE D ILSRCNLSEKMPH SI+KDGD EVGTPLAELEDTSPAV+SECLKAL GLILGSE SLPEFEQIQVP L SEA+IGVARSLGEAYELIY AIMDPK Sbjct: 269 MIDNHLRVLVDKEADAILSRCNLSEKMPHFHKSINKDGDSEVGTPLAELEDTSPAVLSECLKALFGLILGSESSLPEFEQIQVPSLRSEATIGVARSLGEAYELIYNAIMDPKN 382
BLAST of Vfaba.Hedin2.R1.1g072000.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2YZD3|A0A1S2YZD3_CICAR (Conserved oligomeric Golgi complex subunit 6 OS=Cicer arietinum OX=3827 GN=LOC101513122 PE=3 SV=1) HSP 1 Score: 204.912 bits (520), Expect = 9.026e-60 Identity = 100/114 (87.72%), Postives = 104/114 (91.23%), Query Frame = 0 Query: 1 MIDNHLRVLVEKEVDTILSRCNLSEKMPHLRNSIHKDGDDEVGTPLAELEDTSPAVISECLKALLGLILGSEISLPEFEQIQVPKLHSEASIGVARSLGEAYELIYKAIMDPKK 114 MIDNHLRVLVEKE D ILSRCNLSEKMPH NSIHKDGD EVGTPLAELEDTSPAV+SE LKAL GLILGSE SLPEFEQIQVP+L SEASIGVARSLGEAYELIYKAI+DP+ Sbjct: 560 MIDNHLRVLVEKEADAILSRCNLSEKMPHFHNSIHKDGDTEVGTPLAELEDTSPAVLSESLKALFGLILGSESSLPEFEQIQVPRLRSEASIGVARSLGEAYELIYKAIVDPRN 673
BLAST of Vfaba.Hedin2.R1.1g072000.1 vs. UniProtKB/TrEMBL
Match: tr|I3SM52|I3SM52_LOTJA (Conserved oligomeric Golgi complex subunit 6 OS=Lotus japonicus OX=34305 PE=2 SV=1) HSP 1 Score: 188.734 bits (478), Expect = 2.140e-59 Identity = 89/114 (78.07%), Postives = 99/114 (86.84%), Query Frame = 0 Query: 1 MIDNHLRVLVEKEVDTILSRCNLSEKMPHLRNSIHKDGDDEVGTPLAELEDTSPAVISECLKALLGLILGSEISLPEFEQIQVPKLHSEASIGVARSLGEAYELIYKAIMDPKK 114 MID+HLRVLV+KE D IL +CNLSEKMP RNS+H G DEV TPLAE+EDTSP+++SECLKAL GLILGSE SLPEFEQ+QVP+L SEASIGVARSL EAYELIY AIMDPK Sbjct: 1 MIDSHLRVLVDKEADAILRKCNLSEKMPQFRNSVHNKGGDEVSTPLAEMEDTSPSILSECLKALFGLILGSESSLPEFEQMQVPRLRSEASIGVARSLAEAYELIYNAIMDPKN 114
BLAST of Vfaba.Hedin2.R1.1g072000.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6NT58|A0A2Z6NT58_TRISU (Conserved oligomeric Golgi complex subunit 6 OS=Trifolium subterraneum OX=3900 GN=TSUD_222920 PE=3 SV=1) HSP 1 Score: 202.216 bits (513), Expect = 5.467e-59 Identity = 98/114 (85.96%), Postives = 104/114 (91.23%), Query Frame = 0 Query: 1 MIDNHLRVLVEKEVDTILSRCNLSEKMPHLRNSIHKDGDDEVGTPLAELEDTSPAVISECLKALLGLILGSEISLPEFEQIQVPKLHSEASIGVARSLGEAYELIYKAIMDPKK 114 MIDNHLRVLV+KE D ILSRCNLSEKM H R SI+KDGD EVGTPLAELEDTSPAV+SECLKAL GLILGSE SLPEFEQIQVP+L SEA+IGVARSLGEAYELIYKAI+DPK Sbjct: 512 MIDNHLRVLVDKEADAILSRCNLSEKMLHFRKSINKDGDSEVGTPLAELEDTSPAVLSECLKALFGLILGSESSLPEFEQIQVPRLRSEATIGVARSLGEAYELIYKAILDPKN 625
BLAST of Vfaba.Hedin2.R1.1g072000.1 vs. UniProtKB/TrEMBL
Match: tr|V7CL92|V7CL92_PHAVU (Conserved oligomeric Golgi complex subunit 6 OS=Phaseolus vulgaris OX=3885 GN=PHAVU_002G121100g PE=3 SV=1) HSP 1 Score: 202.986 bits (515), Expect = 5.783e-59 Identity = 97/114 (85.09%), Postives = 105/114 (92.11%), Query Frame = 0 Query: 1 MIDNHLRVLVEKEVDTILSRCNLSEKMPHLRNSIHKDGDDEVGTPLAELEDTSPAVISECLKALLGLILGSEISLPEFEQIQVPKLHSEASIGVARSLGEAYELIYKAIMDPKK 114 MIDNHLRVLVEKE + IL RCNLSEKMPHLRNSIHK+G++EVGTPLAE EDTSPAV+SECLKAL GL+LGSE SLPEFEQ+QVP+L SEASIGVARSL EAYELIYKAIMDPK Sbjct: 565 MIDNHLRVLVEKEAEAILRRCNLSEKMPHLRNSIHKEGENEVGTPLAEREDTSPAVLSECLKALFGLVLGSESSLPEFEQMQVPRLRSEASIGVARSLAEAYELIYKAIMDPKN 678
BLAST of Vfaba.Hedin2.R1.1g072000.1 vs. UniProtKB/TrEMBL
Match: tr|G7K401|G7K401_MEDTR (Conserved oligomeric Golgi complex subunit 6 OS=Medicago truncatula OX=3880 GN=11415562 PE=3 SV=1) HSP 1 Score: 202.601 bits (514), Expect = 5.873e-59 Identity = 99/114 (86.84%), Postives = 103/114 (90.35%), Query Frame = 0 Query: 1 MIDNHLRVLVEKEVDTILSRCNLSEKMPHLRNSIHKDGDDEVGTPLAELEDTSPAVISECLKALLGLILGSEISLPEFEQIQVPKLHSEASIGVARSLGEAYELIYKAIMDPKK 114 MIDN LRVLVEKE D IL RCNLSEKMPH NSIHKDGD+EVGTPLAELEDTSPAV+SE LKAL GLILGSE SLPEFEQIQVP+L SEASIGVARSLGEAYELIYKAIM+PK Sbjct: 560 MIDNQLRVLVEKEADAILRRCNLSEKMPHFHNSIHKDGDNEVGTPLAELEDTSPAVLSESLKALFGLILGSESSLPEFEQIQVPRLRSEASIGVARSLGEAYELIYKAIMEPKN 673
BLAST of Vfaba.Hedin2.R1.1g072000.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445HZ21|A0A445HZ21_GLYSO (Conserved oligomeric Golgi complex subunit 6 OS=Glycine soja OX=3848 GN=D0Y65_029406 PE=3 SV=1) HSP 1 Score: 200.29 bits (508), Expect = 4.294e-58 Identity = 95/114 (83.33%), Postives = 104/114 (91.23%), Query Frame = 0 Query: 1 MIDNHLRVLVEKEVDTILSRCNLSEKMPHLRNSIHKDGDDEVGTPLAELEDTSPAVISECLKALLGLILGSEISLPEFEQIQVPKLHSEASIGVARSLGEAYELIYKAIMDPKK 114 MIDNHL VLVEKE D IL RCNLSEKMPH +NSIHK+GD+EVGTPLAE+EDTSPAV+SECLKAL GLILGSE SLPEFEQ+QVP+L SEA+IGVARSL EAY+LIYKAIMDPK Sbjct: 558 MIDNHLCVLVEKEADAILRRCNLSEKMPHFQNSIHKEGDNEVGTPLAEMEDTSPAVLSECLKALFGLILGSESSLPEFEQMQVPRLRSEATIGVARSLAEAYDLIYKAIMDPKN 671
BLAST of Vfaba.Hedin2.R1.1g072000.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0R0HER9|A0A0R0HER9_SOYBN (Conserved oligomeric Golgi complex subunit 6 OS=Glycine max OX=3847 GN=GLYMA_11G090100 PE=3 SV=1) HSP 1 Score: 200.29 bits (508), Expect = 4.617e-58 Identity = 95/114 (83.33%), Postives = 104/114 (91.23%), Query Frame = 0 Query: 1 MIDNHLRVLVEKEVDTILSRCNLSEKMPHLRNSIHKDGDDEVGTPLAELEDTSPAVISECLKALLGLILGSEISLPEFEQIQVPKLHSEASIGVARSLGEAYELIYKAIMDPKK 114 MIDNHL VLVEKE D IL RCNLSEKMPH +NSIHK+GD+EVGTPLAE+EDTSPAV+SECLKAL GLILGSE SLPEFEQ+QVP+L SEA+IGVARSL EAY+LIYKAIMDPK Sbjct: 558 MIDNHLCVLVEKEADAILRRCNLSEKMPHFQNSIHKEGDNEVGTPLAEMEDTSPAVLSECLKALFGLILGSESSLPEFEQMQVPRLRSEATIGVARSLAEAYDLIYKAIMDPKN 671
BLAST of Vfaba.Hedin2.R1.1g072000.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q6NMI3|COG6_ARATH (Conserved oligomeric Golgi complex subunit 6 OS=Arabidopsis thaliana OX=3702 GN=COG6 PE=1 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 4.619e-36 Identity = 65/111 (58.56%), Postives = 85/111 (76.58%), Query Frame = 0 Query: 1 MIDNHLRVLVEKEVDTILSRCNLSEKMPHLRNSIHKDGDDEVGTPLAELEDTSPAVISECLKALLGLILGSEISLPEFEQIQVPKLHSEASIGVARSLGEAYELIYKAIMD 111 MI+NH+ +LV+ EVDT+L +C LS+KM R+S + PL+E +DTSPA++SECLKA GL+LGSE SLPEFEQIQVPKL SEA + VA++L EAYE+IY+A+ D Sbjct: 552 MIENHINLLVQNEVDTLLHKCGLSDKMQIFRSSTSE-------LPLSERQDTSPAMLSECLKAFFGLVLGSEGSLPEFEQIQVPKLRSEACVRVAKTLAEAYEVIYQAVTD 655
BLAST of Vfaba.Hedin2.R1.1g072000.1 vs. Araport11
Match: AT1G31780.1 (| oligomeric golgi complex subunit | Chr1:11391341-11394610 FORWARD LENGTH=680 | 201606) HSP 1 Score: 133.265 bits (334), Expect = 4.726e-37 Identity = 65/111 (58.56%), Postives = 85/111 (76.58%), Query Frame = 0 Query: 1 MIDNHLRVLVEKEVDTILSRCNLSEKMPHLRNSIHKDGDDEVGTPLAELEDTSPAVISECLKALLGLILGSEISLPEFEQIQVPKLHSEASIGVARSLGEAYELIYKAIMD 111 MI+NH+ +LV+ EVDT+L +C LS+KM R+S + PL+E +DTSPA++SECLKA GL+LGSE SLPEFEQIQVPKL SEA + VA++L EAYE+IY+A+ D Sbjct: 552 MIENHINLLVQNEVDTLLHKCGLSDKMQIFRSSTSE-------LPLSERQDTSPAMLSECLKAFFGLVLGSEGSLPEFEQIQVPKLRSEACVRVAKTLAEAYEVIYQAVTD 655 The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.1g072000.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL) Total hits: 10
BLAST of Vfaba.Hedin2.R1.1g072000.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot) Total hits: 1
BLAST of Vfaba.Hedin2.R1.1g072000.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11) Total hits: 1
InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vfaba.Hedin2.R1.1g072000.1_vfh_v1 ID=Vfaba.Hedin2.R1.1g072000.1_vfh_v1; Name=Vfaba.Hedin2.R1.1g072000.1; organism=Vicia faba; type=mRNA; length=384bpback to top protein sequence of Vfaba.Hedin2.R1.1g072000.1_vfh_v1 >Vfaba.Hedin2.R1.1g072000.1_vfh_v1 ID=Vfaba.Hedin2.R1.1g072000.1_vfh_v1; Name=Vfaba.Hedin2.R1.1g072000.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=127bpback to top mRNA from alignment at chr1S:472035242..472035625+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>Vfaba.Hedin2.R1.1g072000.1_vfh_v1 ID=Vfaba.Hedin2.R1.1g072000.1_vfh_v1; Name=Vfaba.Hedin2.R1.1g072000.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr1S:472035242..472035625+ (Vicia fababack to top Annotated Terms
The
following terms have been associated with
this mRNA:
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