Vfaba.Hedin2.R1.1g072000.1

Transcript Overview
NameVfaba.Hedin2.R1.1g072000.1
Unique NameVfaba.Hedin2.R1.1g072000.1_vfh_v1
TypemRNA
OrganismVicia faba (Faba bean)
Sequence length384
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr1Schromosomechr1S:472035242..472035625 +Vicia faba inbred line Hedin/2 genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vfhzwsR147Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
asvfhL117Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvfhL199Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvfhL650Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvfhL659Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cavfhL023Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavfhL028Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvfhL0286Cajanus cajan Asha genome v1.0Cajanus cajan
pvvfhL147Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvfhL556Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
psvfhL417Pisum sativum Cameor genome v1aPisum sativum
tifvfhL071Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuR171Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvfhL0263Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL0565Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL0879Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL1034Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL1124Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL1212Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
vfhvrvR116Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvrvR154Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvssR123Vicia sativa cv. Studenica genome v1.0Vicia sativa
vfhvssR150Vicia sativa cv. Studenica genome v1.0Vicia sativa
vfhvuaR158Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvfhL023Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvfhL060Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvfhL142Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvfhL671Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvfhL025Cicer arietinum
carvfhL534Cicer arietinum
ccavfhL074Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavfhL387Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavfhL682Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vfhvumR201Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvumR208Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvumR213Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvumR215Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvvaR144Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vasvfhL504Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvfhL561Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvfhL630Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vfhvstR180Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vfhvstR196Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvfvfhL137Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvfhL147Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvfhL460Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvfhL527Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vfhvunR154Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vfaba.Tiffany.R1.1g051880.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.1g072000Vfaba.Hedin2.R1.1g072000_vfh_v1Vicia fabagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.1g072000.1_vfh_v1-exonVfaba.Hedin2.R1.1g072000.1_vfh_v1-exon-chr1S_vfh_v1:472035242..472035625Vicia fabaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.1g072000.1_vfh_v1-cdsVfaba.Hedin2.R1.1g072000.1_vfh_v1-cds-chr1S_vfh_v1:472035242..472035625Vicia fabaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.1g072000.1_vfh_v1Vfaba.Hedin2.R1.1g072000.1_vfh_v1Vicia fabapolypeptide
Vfaba.Hedin2.R1.1g072000.1_vfh_v1Vfaba.Hedin2.R1.1g072000.1_vfh_v1-proteinVicia fabapolypeptide


Homology
BLAST of Vfaba.Hedin2.R1.1g072000.1 vs. UniProtKB/TrEMBL
Match: tr|A0A392QES7|A0A392QES7_9FABA (Conserved oligomeric Golgi complex subunit 6 (Fragment) OS=Trifolium medium OX=97028 PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 4.253e-65
Identity = 100/114 (87.72%), Postives = 103/114 (90.35%), Query Frame = 0
Query:    1 MIDNHLRVLVEKEVDTILSRCNLSEKMPHLRNSIHKDGDDEVGTPLAELEDTSPAVISECLKALLGLILGSEISLPEFEQIQVPKLHSEASIGVARSLGEAYELIYKAIMDPKK 114
            MIDNHLRVLV+KE D ILSRCNLSEKMPH   SI+KDGD EVGTPLAELEDTSPAV+SECLKAL GLILGSE SLPEFEQIQVP L SEASIGVARSLGEAYELIYKAIMDPK 
Sbjct:   43 MIDNHLRVLVDKEADAILSRCNLSEKMPHFHKSINKDGDSEVGTPLAELEDTSPAVLSECLKALFGLILGSESSLPEFEQIQVPSLRSEASIGVARSLGEAYELIYKAIMDPKN 156          
BLAST of Vfaba.Hedin2.R1.1g072000.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9VL25|A0A0L9VL25_PHAAN (Conserved oligomeric Golgi complex subunit 6 OS=Phaseolus angularis OX=3914 GN=LR48_Vigan10g131600 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 1.528e-61
Identity = 94/113 (83.19%), Postives = 103/113 (91.15%), Query Frame = 0
Query:    1 MIDNHLRVLVEKEVDTILSRCNLSEKMPHLRNSIHKDGDDEVGTPLAELEDTSPAVISECLKALLGLILGSEISLPEFEQIQVPKLHSEASIGVARSLGEAYELIYKAIMDPK 113
            MIDNHLRVLVEKE + IL RCNLSEKM  L+NSIHK+G++EVGTPLAE EDTSPA++SECLKAL GLILGSE SLPEFEQ+QVP+L SEASIGVARSL EAYELIYKAIMDPK
Sbjct:    1 MIDNHLRVLVEKEAEAILRRCNLSEKMRLLQNSIHKEGENEVGTPLAEREDTSPAILSECLKALFGLILGSESSLPEFEQMQVPRLRSEASIGVARSLAEAYELIYKAIMDPK 113          
BLAST of Vfaba.Hedin2.R1.1g072000.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3P795|A0A2K3P795_TRIPR (Conserved oligomeric Golgi complex subunit 6 (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g007766 PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 3.758e-61
Identity = 98/114 (85.96%), Postives = 102/114 (89.47%), Query Frame = 0
Query:    1 MIDNHLRVLVEKEVDTILSRCNLSEKMPHLRNSIHKDGDDEVGTPLAELEDTSPAVISECLKALLGLILGSEISLPEFEQIQVPKLHSEASIGVARSLGEAYELIYKAIMDPKK 114
            MIDNHLRVLV+KE D ILSRCNLSEKMPH   SI+KDGD EVGTPLAELEDTSPAV+SECLKAL GLILGSE SLPEFEQIQVP L SEA+IGVARSLGEAYELIY AIMDPK 
Sbjct:  269 MIDNHLRVLVDKEADAILSRCNLSEKMPHFHKSINKDGDSEVGTPLAELEDTSPAVLSECLKALFGLILGSESSLPEFEQIQVPSLRSEATIGVARSLGEAYELIYNAIMDPKN 382          
BLAST of Vfaba.Hedin2.R1.1g072000.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2YZD3|A0A1S2YZD3_CICAR (Conserved oligomeric Golgi complex subunit 6 OS=Cicer arietinum OX=3827 GN=LOC101513122 PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 9.026e-60
Identity = 100/114 (87.72%), Postives = 104/114 (91.23%), Query Frame = 0
Query:    1 MIDNHLRVLVEKEVDTILSRCNLSEKMPHLRNSIHKDGDDEVGTPLAELEDTSPAVISECLKALLGLILGSEISLPEFEQIQVPKLHSEASIGVARSLGEAYELIYKAIMDPKK 114
            MIDNHLRVLVEKE D ILSRCNLSEKMPH  NSIHKDGD EVGTPLAELEDTSPAV+SE LKAL GLILGSE SLPEFEQIQVP+L SEASIGVARSLGEAYELIYKAI+DP+ 
Sbjct:  560 MIDNHLRVLVEKEADAILSRCNLSEKMPHFHNSIHKDGDTEVGTPLAELEDTSPAVLSESLKALFGLILGSESSLPEFEQIQVPRLRSEASIGVARSLGEAYELIYKAIVDPRN 673          
BLAST of Vfaba.Hedin2.R1.1g072000.1 vs. UniProtKB/TrEMBL
Match: tr|I3SM52|I3SM52_LOTJA (Conserved oligomeric Golgi complex subunit 6 OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.140e-59
Identity = 89/114 (78.07%), Postives = 99/114 (86.84%), Query Frame = 0
Query:    1 MIDNHLRVLVEKEVDTILSRCNLSEKMPHLRNSIHKDGDDEVGTPLAELEDTSPAVISECLKALLGLILGSEISLPEFEQIQVPKLHSEASIGVARSLGEAYELIYKAIMDPKK 114
            MID+HLRVLV+KE D IL +CNLSEKMP  RNS+H  G DEV TPLAE+EDTSP+++SECLKAL GLILGSE SLPEFEQ+QVP+L SEASIGVARSL EAYELIY AIMDPK 
Sbjct:    1 MIDSHLRVLVDKEADAILRKCNLSEKMPQFRNSVHNKGGDEVSTPLAEMEDTSPSILSECLKALFGLILGSESSLPEFEQMQVPRLRSEASIGVARSLAEAYELIYNAIMDPKN 114          
BLAST of Vfaba.Hedin2.R1.1g072000.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6NT58|A0A2Z6NT58_TRISU (Conserved oligomeric Golgi complex subunit 6 OS=Trifolium subterraneum OX=3900 GN=TSUD_222920 PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 5.467e-59
Identity = 98/114 (85.96%), Postives = 104/114 (91.23%), Query Frame = 0
Query:    1 MIDNHLRVLVEKEVDTILSRCNLSEKMPHLRNSIHKDGDDEVGTPLAELEDTSPAVISECLKALLGLILGSEISLPEFEQIQVPKLHSEASIGVARSLGEAYELIYKAIMDPKK 114
            MIDNHLRVLV+KE D ILSRCNLSEKM H R SI+KDGD EVGTPLAELEDTSPAV+SECLKAL GLILGSE SLPEFEQIQVP+L SEA+IGVARSLGEAYELIYKAI+DPK 
Sbjct:  512 MIDNHLRVLVDKEADAILSRCNLSEKMLHFRKSINKDGDSEVGTPLAELEDTSPAVLSECLKALFGLILGSESSLPEFEQIQVPRLRSEATIGVARSLGEAYELIYKAILDPKN 625          
BLAST of Vfaba.Hedin2.R1.1g072000.1 vs. UniProtKB/TrEMBL
Match: tr|V7CL92|V7CL92_PHAVU (Conserved oligomeric Golgi complex subunit 6 OS=Phaseolus vulgaris OX=3885 GN=PHAVU_002G121100g PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 5.783e-59
Identity = 97/114 (85.09%), Postives = 105/114 (92.11%), Query Frame = 0
Query:    1 MIDNHLRVLVEKEVDTILSRCNLSEKMPHLRNSIHKDGDDEVGTPLAELEDTSPAVISECLKALLGLILGSEISLPEFEQIQVPKLHSEASIGVARSLGEAYELIYKAIMDPKK 114
            MIDNHLRVLVEKE + IL RCNLSEKMPHLRNSIHK+G++EVGTPLAE EDTSPAV+SECLKAL GL+LGSE SLPEFEQ+QVP+L SEASIGVARSL EAYELIYKAIMDPK 
Sbjct:  565 MIDNHLRVLVEKEAEAILRRCNLSEKMPHLRNSIHKEGENEVGTPLAEREDTSPAVLSECLKALFGLVLGSESSLPEFEQMQVPRLRSEASIGVARSLAEAYELIYKAIMDPKN 678          
BLAST of Vfaba.Hedin2.R1.1g072000.1 vs. UniProtKB/TrEMBL
Match: tr|G7K401|G7K401_MEDTR (Conserved oligomeric Golgi complex subunit 6 OS=Medicago truncatula OX=3880 GN=11415562 PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 5.873e-59
Identity = 99/114 (86.84%), Postives = 103/114 (90.35%), Query Frame = 0
Query:    1 MIDNHLRVLVEKEVDTILSRCNLSEKMPHLRNSIHKDGDDEVGTPLAELEDTSPAVISECLKALLGLILGSEISLPEFEQIQVPKLHSEASIGVARSLGEAYELIYKAIMDPKK 114
            MIDN LRVLVEKE D IL RCNLSEKMPH  NSIHKDGD+EVGTPLAELEDTSPAV+SE LKAL GLILGSE SLPEFEQIQVP+L SEASIGVARSLGEAYELIYKAIM+PK 
Sbjct:  560 MIDNQLRVLVEKEADAILRRCNLSEKMPHFHNSIHKDGDNEVGTPLAELEDTSPAVLSESLKALFGLILGSESSLPEFEQIQVPRLRSEASIGVARSLGEAYELIYKAIMEPKN 673          
BLAST of Vfaba.Hedin2.R1.1g072000.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445HZ21|A0A445HZ21_GLYSO (Conserved oligomeric Golgi complex subunit 6 OS=Glycine soja OX=3848 GN=D0Y65_029406 PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 4.294e-58
Identity = 95/114 (83.33%), Postives = 104/114 (91.23%), Query Frame = 0
Query:    1 MIDNHLRVLVEKEVDTILSRCNLSEKMPHLRNSIHKDGDDEVGTPLAELEDTSPAVISECLKALLGLILGSEISLPEFEQIQVPKLHSEASIGVARSLGEAYELIYKAIMDPKK 114
            MIDNHL VLVEKE D IL RCNLSEKMPH +NSIHK+GD+EVGTPLAE+EDTSPAV+SECLKAL GLILGSE SLPEFEQ+QVP+L SEA+IGVARSL EAY+LIYKAIMDPK 
Sbjct:  558 MIDNHLCVLVEKEADAILRRCNLSEKMPHFQNSIHKEGDNEVGTPLAEMEDTSPAVLSECLKALFGLILGSESSLPEFEQMQVPRLRSEATIGVARSLAEAYDLIYKAIMDPKN 671          
BLAST of Vfaba.Hedin2.R1.1g072000.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0R0HER9|A0A0R0HER9_SOYBN (Conserved oligomeric Golgi complex subunit 6 OS=Glycine max OX=3847 GN=GLYMA_11G090100 PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 4.617e-58
Identity = 95/114 (83.33%), Postives = 104/114 (91.23%), Query Frame = 0
Query:    1 MIDNHLRVLVEKEVDTILSRCNLSEKMPHLRNSIHKDGDDEVGTPLAELEDTSPAVISECLKALLGLILGSEISLPEFEQIQVPKLHSEASIGVARSLGEAYELIYKAIMDPKK 114
            MIDNHL VLVEKE D IL RCNLSEKMPH +NSIHK+GD+EVGTPLAE+EDTSPAV+SECLKAL GLILGSE SLPEFEQ+QVP+L SEA+IGVARSL EAY+LIYKAIMDPK 
Sbjct:  558 MIDNHLCVLVEKEADAILRRCNLSEKMPHFQNSIHKEGDNEVGTPLAEMEDTSPAVLSECLKALFGLILGSESSLPEFEQMQVPRLRSEATIGVARSLAEAYDLIYKAIMDPKN 671          
BLAST of Vfaba.Hedin2.R1.1g072000.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q6NMI3|COG6_ARATH (Conserved oligomeric Golgi complex subunit 6 OS=Arabidopsis thaliana OX=3702 GN=COG6 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 4.619e-36
Identity = 65/111 (58.56%), Postives = 85/111 (76.58%), Query Frame = 0
Query:    1 MIDNHLRVLVEKEVDTILSRCNLSEKMPHLRNSIHKDGDDEVGTPLAELEDTSPAVISECLKALLGLILGSEISLPEFEQIQVPKLHSEASIGVARSLGEAYELIYKAIMD 111
            MI+NH+ +LV+ EVDT+L +C LS+KM   R+S  +        PL+E +DTSPA++SECLKA  GL+LGSE SLPEFEQIQVPKL SEA + VA++L EAYE+IY+A+ D
Sbjct:  552 MIENHINLLVQNEVDTLLHKCGLSDKMQIFRSSTSE-------LPLSERQDTSPAMLSECLKAFFGLVLGSEGSLPEFEQIQVPKLRSEACVRVAKTLAEAYEVIYQAVTD 655          
BLAST of Vfaba.Hedin2.R1.1g072000.1 vs. Araport11
Match: AT1G31780.1 (| oligomeric golgi complex subunit | Chr1:11391341-11394610 FORWARD LENGTH=680 | 201606)

HSP 1 Score: 133.265 bits (334), Expect = 4.726e-37
Identity = 65/111 (58.56%), Postives = 85/111 (76.58%), Query Frame = 0
Query:    1 MIDNHLRVLVEKEVDTILSRCNLSEKMPHLRNSIHKDGDDEVGTPLAELEDTSPAVISECLKALLGLILGSEISLPEFEQIQVPKLHSEASIGVARSLGEAYELIYKAIMD 111
            MI+NH+ +LV+ EVDT+L +C LS+KM   R+S  +        PL+E +DTSPA++SECLKA  GL+LGSE SLPEFEQIQVPKL SEA + VA++L EAYE+IY+A+ D
Sbjct:  552 MIENHINLLVQNEVDTLLHKCGLSDKMQIFRSSTSE-------LPLSERQDTSPAMLSECLKAFFGLVLGSEGSLPEFEQIQVPKLRSEACVRVAKTLAEAYEVIYQAVTD 655          
The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.1g072000.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A392QES7|A0A392QES7_9FABA4.253e-6587.72Conserved oligomeric Golgi complex subunit 6 (Frag... [more]
tr|A0A0L9VL25|A0A0L9VL25_PHAAN1.528e-6183.19Conserved oligomeric Golgi complex subunit 6 OS=Ph... [more]
tr|A0A2K3P795|A0A2K3P795_TRIPR3.758e-6185.96Conserved oligomeric Golgi complex subunit 6 (Frag... [more]
tr|A0A1S2YZD3|A0A1S2YZD3_CICAR9.026e-6087.72Conserved oligomeric Golgi complex subunit 6 OS=Ci... [more]
tr|I3SM52|I3SM52_LOTJA2.140e-5978.07Conserved oligomeric Golgi complex subunit 6 OS=Lo... [more]
tr|A0A2Z6NT58|A0A2Z6NT58_TRISU5.467e-5985.96Conserved oligomeric Golgi complex subunit 6 OS=Tr... [more]
tr|V7CL92|V7CL92_PHAVU5.783e-5985.09Conserved oligomeric Golgi complex subunit 6 OS=Ph... [more]
tr|G7K401|G7K401_MEDTR5.873e-5986.84Conserved oligomeric Golgi complex subunit 6 OS=Me... [more]
tr|A0A445HZ21|A0A445HZ21_GLYSO4.294e-5883.33Conserved oligomeric Golgi complex subunit 6 OS=Gl... [more]
tr|A0A0R0HER9|A0A0R0HER9_SOYBN4.617e-5883.33Conserved oligomeric Golgi complex subunit 6 OS=Gl... [more]
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BLAST of Vfaba.Hedin2.R1.1g072000.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
sp|Q6NMI3|COG6_ARATH4.619e-3658.56Conserved oligomeric Golgi complex subunit 6 OS=Ar... [more]
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BLAST of Vfaba.Hedin2.R1.1g072000.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11)
Total hits: 1
Match NameE-valueIdentityDescription
AT1G31780.14.726e-3758.56| oligomeric golgi complex subunit | Chr1:11391341... [more]
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InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010490Conserved oligomeric Golgi complex subunit 6PFAMPF06419COG6coord: 1..117
e-value: 2.2E-16
score: 59.3
IPR010490Conserved oligomeric Golgi complex subunit 6PANTHERPTHR21506COMPONENT OF OLIGOMERIC GOLGI COMPLEX 6coord: 1..118

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vfaba.Hedin2.R1.1g072000.1_vfh_v1 ID=Vfaba.Hedin2.R1.1g072000.1_vfh_v1; Name=Vfaba.Hedin2.R1.1g072000.1; organism=Vicia faba; type=mRNA; length=384bp
ATGATAGATAATCATTTGCGAGTTCTTGTGGAGAAAGAAGTTGATACAAT
CCTAAGTAGATGTAATTTGTCAGAAAAGATGCCTCACTTACGTAATTCAA
TCCATAAGGATGGGGACGACGAAGTTGGTACCCCATTGGCTGAACTAGAA
GATACAAGTCCAGCCGTTATTTCAGAGTGTTTGAAAGCCCTGCTTGGTCT
TATTTTGGGAAGCGAAATTTCCCTGCCTGAGTTTGAGCAGATACAGGTTC
CAAAGTTGCATTCTGAAGCTTCTATAGGAGTGGCCAGATCATTGGGTGAA
GCTTATGAGCTTATTTATAAAGCTATAATGGATCCCAAAAAATGGGAATC
CAGATCCCAGGTCGTTGGCAAGGCATCCTCCTAA
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protein sequence of Vfaba.Hedin2.R1.1g072000.1_vfh_v1

>Vfaba.Hedin2.R1.1g072000.1_vfh_v1 ID=Vfaba.Hedin2.R1.1g072000.1_vfh_v1; Name=Vfaba.Hedin2.R1.1g072000.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=127bp
MIDNHLRVLVEKEVDTILSRCNLSEKMPHLRNSIHKDGDDEVGTPLAELE
DTSPAVISECLKALLGLILGSEISLPEFEQIQVPKLHSEASIGVARSLGE
AYELIYKAIMDPKKWESRSQVVGKASS
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mRNA from alignment at chr1S:472035242..472035625+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vfaba.Hedin2.R1.1g072000.1_vfh_v1 ID=Vfaba.Hedin2.R1.1g072000.1_vfh_v1; Name=Vfaba.Hedin2.R1.1g072000.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr1S:472035242..472035625+ (Vicia faba
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR010490COG6
Vocabulary: Cellular Component
TermDefinition
GO:0017119Golgi transport complex
Vocabulary: Biological Process
TermDefinition
GO:0006891intra-Golgi vesicle-mediated transport