Vfaba.Hedin2.R1.1g224080.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Vfaba.Hedin2.R1.1g224080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2Z010|A0A1S2Z010_CICAR (pentatricopeptide repeat-containing protein At1g76280 isoform X1 OS=Cicer arietinum OX=3827 GN=LOC101500402 PE=3 SV=1) HSP 1 Score: 413.69 bits (1062), Expect = 1.761e-136 Identity = 198/246 (80.49%), Postives = 223/246 (90.65%), Query Frame = 0 Query: 3 CMWARSRRAFSIMDFLGQNRRFYPGLPLYNSILSSCTKIQNLIQARKCLDLMEKKMIGKSEVTYTALIKLAVLQKNLPAVHIIWREYIKLYSMSIIALRKFIWSFTRLGDLKSANRTLQQLVALATRENISIARTVYGKLYSTRLDIPVPANDGLGSTILDLWKSRQHSSCILSPSLHLLDTISASKEHKFICMDDKKAKNTDVNGLNGQKHSLLMKVLRWSFNDIIHGCAKEKNYMLAWKLMLQV 248 C A + AFSI+DFLG+++RFYP LPLYNSIL SCTKIQNLIQARKCLDLMEKKMIGKSEVTY AL+KLAVLQKNLPAVHIIW+EYI LYSMSIIALRKFIWSFTRLGDLKSA RTLQQ+V+LA R N+SIARTVYGKLYSTRLDIPVP+N+GLGSTIL++ KS+QH SCI S L+L DTISASKE K ICMD+KK K+ ++NGLN Q++SLLMKVLRWSFNDIIHGC+KEKNYMLAWKL+LQ+ Sbjct: 133 CKGAYTEEAFSIIDFLGESQRFYPVLPLYNSILRSCTKIQNLIQARKCLDLMEKKMIGKSEVTYNALLKLAVLQKNLPAVHIIWQEYITLYSMSIIALRKFIWSFTRLGDLKSAYRTLQQMVSLAMRGNVSIARTVYGKLYSTRLDIPVPSNNGLGSTILNVSKSKQHDSCIRSSPLNLPDTISASKEQKIICMDNKKVKSAEINGLNEQRNSLLMKVLRWSFNDIIHGCSKEKNYMLAWKLILQM 378
BLAST of Vfaba.Hedin2.R1.1g224080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3EFQ0|A0A1S3EFQ0_CICAR (pentatricopeptide repeat-containing protein At1g76280 isoform X2 OS=Cicer arietinum OX=3827 GN=LOC101500402 PE=3 SV=1) HSP 1 Score: 412.92 bits (1060), Expect = 2.968e-136 Identity = 198/246 (80.49%), Postives = 223/246 (90.65%), Query Frame = 0 Query: 3 CMWARSRRAFSIMDFLGQNRRFYPGLPLYNSILSSCTKIQNLIQARKCLDLMEKKMIGKSEVTYTALIKLAVLQKNLPAVHIIWREYIKLYSMSIIALRKFIWSFTRLGDLKSANRTLQQLVALATRENISIARTVYGKLYSTRLDIPVPANDGLGSTILDLWKSRQHSSCILSPSLHLLDTISASKEHKFICMDDKKAKNTDVNGLNGQKHSLLMKVLRWSFNDIIHGCAKEKNYMLAWKLMLQV 248 C A + AFSI+DFLG+++RFYP LPLYNSIL SCTKIQNLIQARKCLDLMEKKMIGKSEVTY AL+KLAVLQKNLPAVHIIW+EYI LYSMSIIALRKFIWSFTRLGDLKSA RTLQQ+V+LA R N+SIARTVYGKLYSTRLDIPVP+N+GLGSTIL++ KS+QH SCI S L+L DTISASKE K ICMD+KK K+ ++NGLN Q++SLLMKVLRWSFNDIIHGC+KEKNYMLAWKL+LQ+ Sbjct: 124 CKGAYTEEAFSIIDFLGESQRFYPVLPLYNSILRSCTKIQNLIQARKCLDLMEKKMIGKSEVTYNALLKLAVLQKNLPAVHIIWQEYITLYSMSIIALRKFIWSFTRLGDLKSAYRTLQQMVSLAMRGNVSIARTVYGKLYSTRLDIPVPSNNGLGSTILNVSKSKQHDSCIRSSPLNLPDTISASKEQKIICMDNKKVKSAEINGLNEQRNSLLMKVLRWSFNDIIHGCSKEKNYMLAWKLILQM 369
BLAST of Vfaba.Hedin2.R1.1g224080.1 vs. UniProtKB/TrEMBL
Match: tr|G7KPS9|G7KPS9_MEDTR (PPR containing plant-like protein OS=Medicago truncatula OX=3880 GN=11412652 PE=4 SV=2) HSP 1 Score: 395.201 bits (1014), Expect = 1.538e-129 Identity = 188/239 (78.66%), Postives = 216/239 (90.38%), Query Frame = 0 Query: 10 RAFSIMDFLGQNRRFYPGLPLYNSILSSCTKIQNLIQARKCLDLMEKKMIGKSEVTYTALIKLAVLQKNLPAVHIIWREYIKLYSMSIIALRKFIWSFTRLGDLKSANRTLQQLVALATRENISIARTVYGKLYSTRLDIPVPANDGLGSTILDLWKSRQHSSCILSPSLHLLDTISASKEHKFICMDDKKAKNTDVNGLNGQKHSLLMKVLRWSFNDIIHGCAKEKNYMLAWKLMLQV 248 + FSIMDFL ++R FYP LPLYNSIL S T+IQNL+QARKCLDLMEK+MIGKSEVTYTAL+KLAV+QKNLPAVHIIW+EYIKLYSMSI+ LRKF+WSFTRLGDLKSA RTLQQ+V+L R NISIA+TVYGKLYSTRLDIPVP+N LGSTILD+ KS+QH SCILSP ++L + +SASKE + ICMDDKKAK+ ++NGLNG+KHSL MKVLRWSFNDIIHGCA EKNYMLAWKL+LQ+ Sbjct: 142 KDFSIMDFLAESRHFYPVLPLYNSILRSYTEIQNLVQARKCLDLMEKQMIGKSEVTYTALLKLAVVQKNLPAVHIIWQEYIKLYSMSIVPLRKFVWSFTRLGDLKSAYRTLQQMVSLVMRGNISIAKTVYGKLYSTRLDIPVPSNGRLGSTILDIRKSKQHDSCILSP-MYLPNIVSASKEQQIICMDDKKAKSGEINGLNGKKHSLPMKVLRWSFNDIIHGCANEKNYMLAWKLILQL 379
BLAST of Vfaba.Hedin2.R1.1g224080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A072UA70|A0A072UA70_MEDTR (PPR containing plant-like protein OS=Medicago truncatula OX=3880 GN=11412652 PE=4 SV=1) HSP 1 Score: 394.815 bits (1013), Expect = 3.636e-129 Identity = 188/239 (78.66%), Postives = 216/239 (90.38%), Query Frame = 0 Query: 10 RAFSIMDFLGQNRRFYPGLPLYNSILSSCTKIQNLIQARKCLDLMEKKMIGKSEVTYTALIKLAVLQKNLPAVHIIWREYIKLYSMSIIALRKFIWSFTRLGDLKSANRTLQQLVALATRENISIARTVYGKLYSTRLDIPVPANDGLGSTILDLWKSRQHSSCILSPSLHLLDTISASKEHKFICMDDKKAKNTDVNGLNGQKHSLLMKVLRWSFNDIIHGCAKEKNYMLAWKLMLQV 248 + FSIMDFL ++R FYP LPLYNSIL S T+IQNL+QARKCLDLMEK+MIGKSEVTYTAL+KLAV+QKNLPAVHIIW+EYIKLYSMSI+ LRKF+WSFTRLGDLKSA RTLQQ+V+L R NISIA+TVYGKLYSTRLDIPVP+N LGSTILD+ KS+QH SCILSP ++L + +SASKE + ICMDDKKAK+ ++NGLNG+KHSL MKVLRWSFNDIIHGCA EKNYMLAWKL+LQ+ Sbjct: 133 KDFSIMDFLAESRHFYPVLPLYNSILRSYTEIQNLVQARKCLDLMEKQMIGKSEVTYTALLKLAVVQKNLPAVHIIWQEYIKLYSMSIVPLRKFVWSFTRLGDLKSAYRTLQQMVSLVMRGNISIAKTVYGKLYSTRLDIPVPSNGRLGSTILDIRKSKQHDSCILSP-MYLPNIVSASKEQQIICMDDKKAKSGEINGLNGKKHSLPMKVLRWSFNDIIHGCANEKNYMLAWKLILQM 370
BLAST of Vfaba.Hedin2.R1.1g224080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A072UCA2|A0A072UCA2_MEDTR (PPR containing plant-like protein OS=Medicago truncatula OX=3880 GN=11412652 PE=4 SV=1) HSP 1 Score: 394.815 bits (1013), Expect = 4.406e-129 Identity = 188/239 (78.66%), Postives = 216/239 (90.38%), Query Frame = 0 Query: 10 RAFSIMDFLGQNRRFYPGLPLYNSILSSCTKIQNLIQARKCLDLMEKKMIGKSEVTYTALIKLAVLQKNLPAVHIIWREYIKLYSMSIIALRKFIWSFTRLGDLKSANRTLQQLVALATRENISIARTVYGKLYSTRLDIPVPANDGLGSTILDLWKSRQHSSCILSPSLHLLDTISASKEHKFICMDDKKAKNTDVNGLNGQKHSLLMKVLRWSFNDIIHGCAKEKNYMLAWKLMLQV 248 + FSIMDFL ++R FYP LPLYNSIL S T+IQNL+QARKCLDLMEK+MIGKSEVTYTAL+KLAV+QKNLPAVHIIW+EYIKLYSMSI+ LRKF+WSFTRLGDLKSA RTLQQ+V+L R NISIA+TVYGKLYSTRLDIPVP+N LGSTILD+ KS+QH SCILSP ++L + +SASKE + ICMDDKKAK+ ++NGLNG+KHSL MKVLRWSFNDIIHGCA EKNYMLAWKL+LQ+ Sbjct: 142 KDFSIMDFLAESRHFYPVLPLYNSILRSYTEIQNLVQARKCLDLMEKQMIGKSEVTYTALLKLAVVQKNLPAVHIIWQEYIKLYSMSIVPLRKFVWSFTRLGDLKSAYRTLQQMVSLVMRGNISIAKTVYGKLYSTRLDIPVPSNGRLGSTILDIRKSKQHDSCILSP-MYLPNIVSASKEQQIICMDDKKAKSGEINGLNGKKHSLPMKVLRWSFNDIIHGCANEKNYMLAWKLILQM 379
BLAST of Vfaba.Hedin2.R1.1g224080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0R0GGC6|A0A0R0GGC6_SOYBN (PPR_long domain-containing protein OS=Glycine max OX=3847 GN=100780147 PE=3 SV=1) HSP 1 Score: 330.487 bits (846), Expect = 2.064e-107 Identity = 156/246 (63.41%), Postives = 200/246 (81.30%), Query Frame = 0 Query: 3 CMWARSRRAFSIMDFLGQNRRFYPGLPLYNSILSSCTKIQNLIQARKCLDLMEKKMIGKSEVTYTALIKLAVLQKNLPAVHIIWREYIKLYSMSIIALRKFIWSFTRLGDLKSANRTLQQLVALATRENISIARTVYGKLYSTRLDIPVPANDGLGSTILDLWKSRQHSSCILSPSLHLLDTISASKEHKFICMDDKKAKNTDVNGLNGQKHSLLMKVLRWSFNDIIHGCAKEKNYMLAWKLMLQV 248 C AF I+D+LG ++R YP LPLYNS+L SCT +QN+IQA +CLDLMEKKM+GK+EVTY L+KLAVLQKNLPA H+IW+EYIK YSMSI+AL +FIWSFTRLGDL+SA + L ++++LATR NI IARTV+GK+Y+ RLDIPVP+N G GST+LDL ++++ C+ P +++ D+ISAS E + ICM +KKAK+T++ GLNGQKH LL K L SF+DIIHGCAK+KN+MLA KLMLQ+ Sbjct: 134 CNGGYLEEAFDIVDYLGGSQRLYPVLPLYNSLLRSCTTMQNIIQASRCLDLMEKKMVGKNEVTYIELLKLAVLQKNLPAAHLIWQEYIKNYSMSIMALDRFIWSFTRLGDLESAYKILLEMISLATRGNIPIARTVHGKVYTNRLDIPVPSNKGPGSTMLDLKENKKLDYCMHPPLMYIPDSISASIEQQIICMGNKKAKSTELAGLNGQKHPLLKKALSRSFDDIIHGCAKQKNHMLARKLMLQM 379
BLAST of Vfaba.Hedin2.R1.1g224080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A371IDB8|A0A371IDB8_MUCPR (Pentatricopeptide repeat-containing protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_02142 PE=4 SV=1) HSP 1 Score: 336.265 bits (861), Expect = 2.905e-106 Identity = 173/271 (63.84%), Postives = 206/271 (76.01%), Query Frame = 0 Query: 3 CMWARSRRAFSIMDFLGQNRRFYPGLPLYNSILSSCTKIQNLIQARKCLDLMEKKMIGKSEVTYTALIK------------------------LAVLQKNLPAVHIIWREYIKLYSMSIIALRKFIWSFTRLGDLKSANRTLQQLVALATRENISIARTVYGKLYSTRLDIPVPANDGLGSTILDLWKSRQHSSCILSPSLHLLDTISASKEHKFICMDDKKAKNTDVNGLNGQKHSLLMKVLRWSFNDIIHGCAKEKNYMLAWKLMLQVD 249 C AF IMDF G+++ YP LPLYNS+L SCTK+Q++IQA KCL+LMEKKM+GKSEVTYT L+K LAVLQKNLPA H+IW+EYIK YS SIIALRKFIWSFTRLGDL+SA +TLQQ+V+LA R NISIARTVYGKLYSTRLDIPVP+N GLGSTILDL K+++ SCI P ++L D+ IC+ +KKAK+ +++GLNGQKHSLLMKVLRWSF+DIIHGCAK+KNYMLA KLMLQ++ Sbjct: 142 CKGGYLEEAFDIMDFPGESQCLYPVLPLYNSLLRSCTKMQDIIQASKCLELMEKKMVGKSEVTYTKLLKVCRQKVLASFYYCFEEKISLFLRKLAVLQKNLPAAHLIWQEYIKNYSTSIIALRKFIWSFTRLGDLESAYKTLQQMVSLAIRGNISIARTVYGKLYSTRLDIPVPSNKGLGSTILDL-KNKKLDSCIHPPLMYLPDS---------ICVGNKKAKSAELDGLNGQKHSLLMKVLRWSFSDIIHGCAKQKNYMLARKLMLQME 402
BLAST of Vfaba.Hedin2.R1.1g224080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0R0GQG4|A0A0R0GQG4_SOYBN (PPR_long domain-containing protein OS=Glycine max OX=3847 GN=100780147 PE=3 SV=1) HSP 1 Score: 330.102 bits (845), Expect = 1.479e-105 Identity = 156/246 (63.41%), Postives = 200/246 (81.30%), Query Frame = 0 Query: 3 CMWARSRRAFSIMDFLGQNRRFYPGLPLYNSILSSCTKIQNLIQARKCLDLMEKKMIGKSEVTYTALIKLAVLQKNLPAVHIIWREYIKLYSMSIIALRKFIWSFTRLGDLKSANRTLQQLVALATRENISIARTVYGKLYSTRLDIPVPANDGLGSTILDLWKSRQHSSCILSPSLHLLDTISASKEHKFICMDDKKAKNTDVNGLNGQKHSLLMKVLRWSFNDIIHGCAKEKNYMLAWKLMLQV 248 C AF I+D+LG ++R YP LPLYNS+L SCT +QN+IQA +CLDLMEKKM+GK+EVTY L+KLAVLQKNLPA H+IW+EYIK YSMSI+AL +FIWSFTRLGDL+SA + L ++++LATR NI IARTV+GK+Y+ RLDIPVP+N G GST+LDL ++++ C+ P +++ D+ISAS E + ICM +KKAK+T++ GLNGQKH LL K L SF+DIIHGCAK+KN+MLA KLMLQ+ Sbjct: 134 CNGGYLEEAFDIVDYLGGSQRLYPVLPLYNSLLRSCTTMQNIIQASRCLDLMEKKMVGKNEVTYIELLKLAVLQKNLPAAHLIWQEYIKNYSMSIMALDRFIWSFTRLGDLESAYKILLEMISLATRGNIPIARTVHGKVYTNRLDIPVPSNKGPGSTMLDLKENKKLDYCMHPPLMYIPDSISASIEQQIICMGNKKAKSTELAGLNGQKHPLLKKALSRSFDDIIHGCAKQKNHMLARKLMLQM 379
BLAST of Vfaba.Hedin2.R1.1g224080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0R0GGZ7|A0A0R0GGZ7_SOYBN (PPR_long domain-containing protein OS=Glycine max OX=3847 GN=100780147 PE=3 SV=1) HSP 1 Score: 329.717 bits (844), Expect = 3.168e-105 Identity = 156/246 (63.41%), Postives = 200/246 (81.30%), Query Frame = 0 Query: 3 CMWARSRRAFSIMDFLGQNRRFYPGLPLYNSILSSCTKIQNLIQARKCLDLMEKKMIGKSEVTYTALIKLAVLQKNLPAVHIIWREYIKLYSMSIIALRKFIWSFTRLGDLKSANRTLQQLVALATRENISIARTVYGKLYSTRLDIPVPANDGLGSTILDLWKSRQHSSCILSPSLHLLDTISASKEHKFICMDDKKAKNTDVNGLNGQKHSLLMKVLRWSFNDIIHGCAKEKNYMLAWKLMLQV 248 C AF I+D+LG ++R YP LPLYNS+L SCT +QN+IQA +CLDLMEKKM+GK+EVTY L+KLAVLQKNLPA H+IW+EYIK YSMSI+AL +FIWSFTRLGDL+SA + L ++++LATR NI IARTV+GK+Y+ RLDIPVP+N G GST+LDL ++++ C+ P +++ D+ISAS E + ICM +KKAK+T++ GLNGQKH LL K L SF+DIIHGCAK+KN+MLA KLMLQ+ Sbjct: 134 CNGGYLEEAFDIVDYLGGSQRLYPVLPLYNSLLRSCTTMQNIIQASRCLDLMEKKMVGKNEVTYIELLKLAVLQKNLPAAHLIWQEYIKNYSMSIMALDRFIWSFTRLGDLESAYKILLEMISLATRGNIPIARTVHGKVYTNRLDIPVPSNKGPGSTMLDLKENKKLDYCMHPPLMYIPDSISASIEQQIICMGNKKAKSTELAGLNGQKHPLLKKALSRSFDDIIHGCAKQKNHMLARKLMLQM 379
BLAST of Vfaba.Hedin2.R1.1g224080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445H9D5|A0A445H9D5_GLYSO (Pentatricopeptide repeat-containing protein isoform B OS=Glycine soja OX=3848 GN=D0Y65_039513 PE=4 SV=1) HSP 1 Score: 330.872 bits (847), Expect = 1.246e-104 Identity = 156/246 (63.41%), Postives = 200/246 (81.30%), Query Frame = 0 Query: 3 CMWARSRRAFSIMDFLGQNRRFYPGLPLYNSILSSCTKIQNLIQARKCLDLMEKKMIGKSEVTYTALIKLAVLQKNLPAVHIIWREYIKLYSMSIIALRKFIWSFTRLGDLKSANRTLQQLVALATRENISIARTVYGKLYSTRLDIPVPANDGLGSTILDLWKSRQHSSCILSPSLHLLDTISASKEHKFICMDDKKAKNTDVNGLNGQKHSLLMKVLRWSFNDIIHGCAKEKNYMLAWKLMLQV 248 C AF I+D+LG ++R YP LPLYNS+L SCT +QN+IQA +CLDLMEKKM+GK+EVTY L+KLAVLQKNLPA H+IW+EYIK YSMSI+AL +FIWSFTRLGDL+SA + L ++++LATR NI IARTV+GK+Y+ RLDIPVP+N G GST+LDL ++++ C+ P +++ D+ISAS E + ICM +KKAK+T++ GLNGQKH LL K L SF+DIIHGCAK+KN+MLA KLMLQ+ Sbjct: 120 CNGGYLEEAFDIVDYLGGSQRLYPVLPLYNSLLRSCTTMQNIIQASRCLDLMEKKMVGKNEVTYIELLKLAVLQKNLPAAHLIWQEYIKNYSMSIMALDRFIWSFTRLGDLESAYKILLEMISLATRGNIPIARTVHGKVYTNRLDIPVPSNKGPGSTMLDLKENKKLDYCMHPPLMYIPDSISASIEQQIICMGNKKAKSTELAGLNGQKHPLLKKALSRSFDDIIHGCAKQKNHMLARKLMLQM 365
BLAST of Vfaba.Hedin2.R1.1g224080.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9SGQ6|PP126_ARATH (Pentatricopeptide repeat-containing protein At1g76280 OS=Arabidopsis thaliana OX=3702 GN=At1g76280 PE=2 SV=2) HSP 1 Score: 176.792 bits (447), Expect = 1.687e-49 Identity = 97/248 (39.11%), Postives = 143/248 (57.66%), Query Frame = 0 Query: 3 CMWARSRRAFSIMDFLGQNRRFYPGLPLYNSILSSCTKIQNLIQARKCLDLMEKKMIGKSEVTYTALIKLAVLQKNLPAVHIIWREYIKLYSMSIIALRKFIWSFTRLGDLKSANRTLQQLVALATRENISIARTVYGKLYSTRLDIPVPANDGLGSTILDLWKSRQHSSCILSPSLHLLDTISASKEHKFICMDDKKAKNTDVNGLNGQKHSLLMKVLRWSFNDIIHGCAKEKNYMLAWKLMLQVDI 250 C +A + + ++ R P LP+YN L +C + +++ A KCL+LM+++ +GK+ +TY AL+KLAV Q+NL V+ IW+ Y+ Y++ I++LR+FIWSFTRLGDLKSA LQ +V LA R + ++ GKL+STRL IPVP+ D GS + + ++D S+SK V G L ++VLRWSFND+IH C + KN LA +LMLQ+ + Sbjct: 142 CNGGHLDKASEFIHAVREDDRISPLLPIYNFFLGACARTRSVYHASKCLELMDQRRVGKNGITYVALLKLAVFQRNLSTVNDIWKHYVNHYNLDILSLRRFIWSFTRLGDLKSAYELLQHMVYLALRGEFFV-KSNRGKLHSTRLYIPVPSKDETGSEKFAFGVTDR-----------IVDCNSSSK----------------VALPKGHNKILAIRVLRWSFNDVIHACGQSKNSELAEQLMLQLKV 361
BLAST of Vfaba.Hedin2.R1.1g224080.1 vs. Araport11
Match: AT1G76280.4 (| Tetratricopeptide repeat (TPR)-like superfamily protein | Chr1:28618703-28622581 REVERSE LENGTH=658 | 201606) HSP 1 Score: 176.022 bits (445), Expect = 1.104e-50 Identity = 97/246 (39.43%), Postives = 142/246 (57.72%), Query Frame = 0 Query: 3 CMWARSRRAFSIMDFLGQNRRFYPGLPLYNSILSSCTKIQNLIQARKCLDLMEKKMIGKSEVTYTALIKLAVLQKNLPAVHIIWREYIKLYSMSIIALRKFIWSFTRLGDLKSANRTLQQLVALATRENISIARTVYGKLYSTRLDIPVPANDGLGSTILDLWKSRQHSSCILSPSLHLLDTISASKEHKFICMDDKKAKNTDVNGLNGQKHSLLMKVLRWSFNDIIHGCAKEKNYMLAWKLMLQV 248 C +A + + ++ R P LP+YN L +C + +++ A KCL+LM+++ +GK+ +TY AL+KLAV Q+NL V+ IW+ Y+ Y++ I++LR+FIWSFTRLGDLKSA LQ +V LA R + ++ GKL+STRL IPVP+ D GS + + ++D S+SK V G L ++VLRWSFND+IH C + KN LA +LMLQ+ Sbjct: 142 CNGGHLDKASEFIHAVREDDRISPLLPIYNFFLGACARTRSVYHASKCLELMDQRRVGKNGITYVALLKLAVFQRNLSTVNDIWKHYVNHYNLDILSLRRFIWSFTRLGDLKSAYELLQHMVYLALRGEFFV-KSNRGKLHSTRLYIPVPSKDETGSEKFAFGVTDR-----------IVDCNSSSK----------------VALPKGHNKILAIRVLRWSFNDVIHACGQSKNSELAEQLMLQM 359
BLAST of Vfaba.Hedin2.R1.1g224080.1 vs. Araport11
Match: AT1G76280.2 (| Tetratricopeptide repeat (TPR)-like superfamily protein | Chr1:28618365-28622581 REVERSE LENGTH=693 | 201606) HSP 1 Score: 176.022 bits (445), Expect = 1.662e-50 Identity = 97/246 (39.43%), Postives = 142/246 (57.72%), Query Frame = 0 Query: 3 CMWARSRRAFSIMDFLGQNRRFYPGLPLYNSILSSCTKIQNLIQARKCLDLMEKKMIGKSEVTYTALIKLAVLQKNLPAVHIIWREYIKLYSMSIIALRKFIWSFTRLGDLKSANRTLQQLVALATRENISIARTVYGKLYSTRLDIPVPANDGLGSTILDLWKSRQHSSCILSPSLHLLDTISASKEHKFICMDDKKAKNTDVNGLNGQKHSLLMKVLRWSFNDIIHGCAKEKNYMLAWKLMLQV 248 C +A + + ++ R P LP+YN L +C + +++ A KCL+LM+++ +GK+ +TY AL+KLAV Q+NL V+ IW+ Y+ Y++ I++LR+FIWSFTRLGDLKSA LQ +V LA R + ++ GKL+STRL IPVP+ D GS + + ++D S+SK V G L ++VLRWSFND+IH C + KN LA +LMLQ+ Sbjct: 142 CNGGHLDKASEFIHAVREDDRISPLLPIYNFFLGACARTRSVYHASKCLELMDQRRVGKNGITYVALLKLAVFQRNLSTVNDIWKHYVNHYNLDILSLRRFIWSFTRLGDLKSAYELLQHMVYLALRGEFFV-KSNRGKLHSTRLYIPVPSKDETGSEKFAFGVTDR-----------IVDCNSSSK----------------VALPKGHNKILAIRVLRWSFNDVIHACGQSKNSELAEQLMLQM 359
BLAST of Vfaba.Hedin2.R1.1g224080.1 vs. Araport11
Match: AT1G76280.1 (| Tetratricopeptide repeat (TPR)-like superfamily protein | Chr1:28617948-28622581 REVERSE LENGTH=773 | 201606) HSP 1 Score: 176.792 bits (447), Expect = 1.726e-50 Identity = 97/248 (39.11%), Postives = 143/248 (57.66%), Query Frame = 0 Query: 3 CMWARSRRAFSIMDFLGQNRRFYPGLPLYNSILSSCTKIQNLIQARKCLDLMEKKMIGKSEVTYTALIKLAVLQKNLPAVHIIWREYIKLYSMSIIALRKFIWSFTRLGDLKSANRTLQQLVALATRENISIARTVYGKLYSTRLDIPVPANDGLGSTILDLWKSRQHSSCILSPSLHLLDTISASKEHKFICMDDKKAKNTDVNGLNGQKHSLLMKVLRWSFNDIIHGCAKEKNYMLAWKLMLQVDI 250 C +A + + ++ R P LP+YN L +C + +++ A KCL+LM+++ +GK+ +TY AL+KLAV Q+NL V+ IW+ Y+ Y++ I++LR+FIWSFTRLGDLKSA LQ +V LA R + ++ GKL+STRL IPVP+ D GS + + ++D S+SK V G L ++VLRWSFND+IH C + KN LA +LMLQ+ + Sbjct: 142 CNGGHLDKASEFIHAVREDDRISPLLPIYNFFLGACARTRSVYHASKCLELMDQRRVGKNGITYVALLKLAVFQRNLSTVNDIWKHYVNHYNLDILSLRRFIWSFTRLGDLKSAYELLQHMVYLALRGEFFV-KSNRGKLHSTRLYIPVPSKDETGSEKFAFGVTDR-----------IVDCNSSSK----------------VALPKGHNKILAIRVLRWSFNDVIHACGQSKNSELAEQLMLQLKV 361
BLAST of Vfaba.Hedin2.R1.1g224080.1 vs. Araport11
Match: AT1G76280.3 (| Tetratricopeptide repeat (TPR)-like superfamily protein | Chr1:28617948-28622581 REVERSE LENGTH=801 | 201606) HSP 1 Score: 176.022 bits (445), Expect = 3.229e-50 Identity = 97/246 (39.43%), Postives = 142/246 (57.72%), Query Frame = 0 Query: 3 CMWARSRRAFSIMDFLGQNRRFYPGLPLYNSILSSCTKIQNLIQARKCLDLMEKKMIGKSEVTYTALIKLAVLQKNLPAVHIIWREYIKLYSMSIIALRKFIWSFTRLGDLKSANRTLQQLVALATRENISIARTVYGKLYSTRLDIPVPANDGLGSTILDLWKSRQHSSCILSPSLHLLDTISASKEHKFICMDDKKAKNTDVNGLNGQKHSLLMKVLRWSFNDIIHGCAKEKNYMLAWKLMLQV 248 C +A + + ++ R P LP+YN L +C + +++ A KCL+LM+++ +GK+ +TY AL+KLAV Q+NL V+ IW+ Y+ Y++ I++LR+FIWSFTRLGDLKSA LQ +V LA R + ++ GKL+STRL IPVP+ D GS + + ++D S+SK V G L ++VLRWSFND+IH C + KN LA +LMLQ+ Sbjct: 138 CNGGHLDKASEFIHAVREDDRISPLLPIYNFFLGACARTRSVYHASKCLELMDQRRVGKNGITYVALLKLAVFQRNLSTVNDIWKHYVNHYNLDILSLRRFIWSFTRLGDLKSAYELLQHMVYLALRGEFFV-KSNRGKLHSTRLYIPVPSKDETGSEKFAFGVTDR-----------IVDCNSSSK----------------VALPKGHNKILAIRVLRWSFNDVIHACGQSKNSELAEQLMLQM 355
BLAST of Vfaba.Hedin2.R1.1g224080.1 vs. Araport11
Match: AT1G76280.5 (| Tetratricopeptide repeat (TPR)-like superfamily protein | Chr1:28617948-28622581 REVERSE LENGTH=805 | 201606) HSP 1 Score: 176.022 bits (445), Expect = 3.798e-50 Identity = 97/246 (39.43%), Postives = 142/246 (57.72%), Query Frame = 0 Query: 3 CMWARSRRAFSIMDFLGQNRRFYPGLPLYNSILSSCTKIQNLIQARKCLDLMEKKMIGKSEVTYTALIKLAVLQKNLPAVHIIWREYIKLYSMSIIALRKFIWSFTRLGDLKSANRTLQQLVALATRENISIARTVYGKLYSTRLDIPVPANDGLGSTILDLWKSRQHSSCILSPSLHLLDTISASKEHKFICMDDKKAKNTDVNGLNGQKHSLLMKVLRWSFNDIIHGCAKEKNYMLAWKLMLQV 248 C +A + + ++ R P LP+YN L +C + +++ A KCL+LM+++ +GK+ +TY AL+KLAV Q+NL V+ IW+ Y+ Y++ I++LR+FIWSFTRLGDLKSA LQ +V LA R + ++ GKL+STRL IPVP+ D GS + + ++D S+SK V G L ++VLRWSFND+IH C + KN LA +LMLQ+ Sbjct: 142 CNGGHLDKASEFIHAVREDDRISPLLPIYNFFLGACARTRSVYHASKCLELMDQRRVGKNGITYVALLKLAVFQRNLSTVNDIWKHYVNHYNLDILSLRRFIWSFTRLGDLKSAYELLQHMVYLALRGEFFV-KSNRGKLHSTRLYIPVPSKDETGSEKFAFGVTDR-----------IVDCNSSSK----------------VALPKGHNKILAIRVLRWSFNDVIHACGQSKNSELAEQLMLQM 359 The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.1g224080.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL) Total hits: 10
BLAST of Vfaba.Hedin2.R1.1g224080.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot) Total hits: 1
BLAST of Vfaba.Hedin2.R1.1g224080.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11) Total hits: 5
InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vfaba.Hedin2.R1.1g224080.1_vfh_v1 ID=Vfaba.Hedin2.R1.1g224080.1_vfh_v1; Name=Vfaba.Hedin2.R1.1g224080.1; organism=Vicia faba; type=mRNA; length=765bpback to top protein sequence of Vfaba.Hedin2.R1.1g224080.1_vfh_v1 >Vfaba.Hedin2.R1.1g224080.1_vfh_v1 ID=Vfaba.Hedin2.R1.1g224080.1_vfh_v1; Name=Vfaba.Hedin2.R1.1g224080.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=254bpback to top mRNA from alignment at chr1L:200056690..200058485+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>Vfaba.Hedin2.R1.1g224080.1_vfh_v1 ID=Vfaba.Hedin2.R1.1g224080.1_vfh_v1; Name=Vfaba.Hedin2.R1.1g224080.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr1L:200056690..200058485+ (Vicia fababack to top |