Vfaba.Hedin2.R1.1g224080.1

Transcript Overview
NameVfaba.Hedin2.R1.1g224080.1
Unique NameVfaba.Hedin2.R1.1g224080.1_vfh_v1
TypemRNA
OrganismVicia faba (Faba bean)
Sequence length765
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr1Lchromosomechr1L:200056690..200058485 +Vicia faba inbred line Hedin/2 genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vfhzwsR015Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
asvfhL565Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvfhL765Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cavfhL109Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavfhL375Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvfhL0254Cajanus cajan Asha genome v1.0Cajanus cajan
ccvfhL0990Cajanus cajan Asha genome v1.0Cajanus cajan
crvfhL017Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crvfhL154Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvfhL327Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvfhL696Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvfhL785Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
psvfhL103Pisum sativum Cameor genome v1aPisum sativum
vfhvfhR014Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvfhL000Vicia faba cv. Tiffany genome v1.0Vicia faba
tifvfhL133Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuR089Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vfhvuR102Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvfhL0133Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL0320Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL0361Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL0462Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL0517Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL0598Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL0712Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL0928Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL1204Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
vfhvrvR055Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvssR041Vicia sativa cv. Studenica genome v1.0Vicia sativa
vfhvssR054Vicia sativa cv. Studenica genome v1.0Vicia sativa
vfhvuaR049Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vfhvuaR072Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vfhvuaR089Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvfhL095Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvfhL567Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvfhL728Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvfhL777Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvfhL086Cicer arietinum
carvfhL317Cicer arietinum
ccavfhL289Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavfhL467Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavfhL732Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vfhvumR015Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvumR043Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvumR059Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvumR073Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvvaR060Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vfhvvaR105Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vasvfhL122Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvfhL218Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvfhL319Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vfhvstR014Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vfhvstR016Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vfhvstR040Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vfhvstR049Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vfhvstR060Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvfvfhL222Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvfhL315Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvfhL679Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvfhL766Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vfhvunR079Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vfhvunR090Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.1g224080Vfaba.Hedin2.R1.1g224080_vfh_v1Vicia fabagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.1g224080.1_vfh_v1-exonVfaba.Hedin2.R1.1g224080.1_vfh_v1-exon-chr1L_vfh_v1:200056690..200056719Vicia fabaexon
Vfaba.Hedin2.R1.1g224080.1_vfh_v1-exonVfaba.Hedin2.R1.1g224080.1_vfh_v1-exon-chr1L_vfh_v1:200056955..200057137Vicia fabaexon
Vfaba.Hedin2.R1.1g224080.1_vfh_v1-exonVfaba.Hedin2.R1.1g224080.1_vfh_v1-exon-chr1L_vfh_v1:200057934..200058485Vicia fabaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.1g224080.1_vfh_v1-cdsVfaba.Hedin2.R1.1g224080.1_vfh_v1-cds-chr1L_vfh_v1:200056690..200056719Vicia fabaCDS
Vfaba.Hedin2.R1.1g224080.1_vfh_v1-cdsVfaba.Hedin2.R1.1g224080.1_vfh_v1-cds-chr1L_vfh_v1:200056955..200057137Vicia fabaCDS
Vfaba.Hedin2.R1.1g224080.1_vfh_v1-cdsVfaba.Hedin2.R1.1g224080.1_vfh_v1-cds-chr1L_vfh_v1:200057934..200058485Vicia fabaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.1g224080.1_vfh_v1Vfaba.Hedin2.R1.1g224080.1_vfh_v1Vicia fabapolypeptide
Vfaba.Hedin2.R1.1g224080.1_vfh_v1Vfaba.Hedin2.R1.1g224080.1_vfh_v1-proteinVicia fabapolypeptide


Homology
BLAST of Vfaba.Hedin2.R1.1g224080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2Z010|A0A1S2Z010_CICAR (pentatricopeptide repeat-containing protein At1g76280 isoform X1 OS=Cicer arietinum OX=3827 GN=LOC101500402 PE=3 SV=1)

HSP 1 Score: 413.69 bits (1062), Expect = 1.761e-136
Identity = 198/246 (80.49%), Postives = 223/246 (90.65%), Query Frame = 0
Query:    3 CMWARSRRAFSIMDFLGQNRRFYPGLPLYNSILSSCTKIQNLIQARKCLDLMEKKMIGKSEVTYTALIKLAVLQKNLPAVHIIWREYIKLYSMSIIALRKFIWSFTRLGDLKSANRTLQQLVALATRENISIARTVYGKLYSTRLDIPVPANDGLGSTILDLWKSRQHSSCILSPSLHLLDTISASKEHKFICMDDKKAKNTDVNGLNGQKHSLLMKVLRWSFNDIIHGCAKEKNYMLAWKLMLQV 248
            C  A +  AFSI+DFLG+++RFYP LPLYNSIL SCTKIQNLIQARKCLDLMEKKMIGKSEVTY AL+KLAVLQKNLPAVHIIW+EYI LYSMSIIALRKFIWSFTRLGDLKSA RTLQQ+V+LA R N+SIARTVYGKLYSTRLDIPVP+N+GLGSTIL++ KS+QH SCI S  L+L DTISASKE K ICMD+KK K+ ++NGLN Q++SLLMKVLRWSFNDIIHGC+KEKNYMLAWKL+LQ+
Sbjct:  133 CKGAYTEEAFSIIDFLGESQRFYPVLPLYNSILRSCTKIQNLIQARKCLDLMEKKMIGKSEVTYNALLKLAVLQKNLPAVHIIWQEYITLYSMSIIALRKFIWSFTRLGDLKSAYRTLQQMVSLAMRGNVSIARTVYGKLYSTRLDIPVPSNNGLGSTILNVSKSKQHDSCIRSSPLNLPDTISASKEQKIICMDNKKVKSAEINGLNEQRNSLLMKVLRWSFNDIIHGCSKEKNYMLAWKLILQM 378          
BLAST of Vfaba.Hedin2.R1.1g224080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3EFQ0|A0A1S3EFQ0_CICAR (pentatricopeptide repeat-containing protein At1g76280 isoform X2 OS=Cicer arietinum OX=3827 GN=LOC101500402 PE=3 SV=1)

HSP 1 Score: 412.92 bits (1060), Expect = 2.968e-136
Identity = 198/246 (80.49%), Postives = 223/246 (90.65%), Query Frame = 0
Query:    3 CMWARSRRAFSIMDFLGQNRRFYPGLPLYNSILSSCTKIQNLIQARKCLDLMEKKMIGKSEVTYTALIKLAVLQKNLPAVHIIWREYIKLYSMSIIALRKFIWSFTRLGDLKSANRTLQQLVALATRENISIARTVYGKLYSTRLDIPVPANDGLGSTILDLWKSRQHSSCILSPSLHLLDTISASKEHKFICMDDKKAKNTDVNGLNGQKHSLLMKVLRWSFNDIIHGCAKEKNYMLAWKLMLQV 248
            C  A +  AFSI+DFLG+++RFYP LPLYNSIL SCTKIQNLIQARKCLDLMEKKMIGKSEVTY AL+KLAVLQKNLPAVHIIW+EYI LYSMSIIALRKFIWSFTRLGDLKSA RTLQQ+V+LA R N+SIARTVYGKLYSTRLDIPVP+N+GLGSTIL++ KS+QH SCI S  L+L DTISASKE K ICMD+KK K+ ++NGLN Q++SLLMKVLRWSFNDIIHGC+KEKNYMLAWKL+LQ+
Sbjct:  124 CKGAYTEEAFSIIDFLGESQRFYPVLPLYNSILRSCTKIQNLIQARKCLDLMEKKMIGKSEVTYNALLKLAVLQKNLPAVHIIWQEYITLYSMSIIALRKFIWSFTRLGDLKSAYRTLQQMVSLAMRGNVSIARTVYGKLYSTRLDIPVPSNNGLGSTILNVSKSKQHDSCIRSSPLNLPDTISASKEQKIICMDNKKVKSAEINGLNEQRNSLLMKVLRWSFNDIIHGCSKEKNYMLAWKLILQM 369          
BLAST of Vfaba.Hedin2.R1.1g224080.1 vs. UniProtKB/TrEMBL
Match: tr|G7KPS9|G7KPS9_MEDTR (PPR containing plant-like protein OS=Medicago truncatula OX=3880 GN=11412652 PE=4 SV=2)

HSP 1 Score: 395.201 bits (1014), Expect = 1.538e-129
Identity = 188/239 (78.66%), Postives = 216/239 (90.38%), Query Frame = 0
Query:   10 RAFSIMDFLGQNRRFYPGLPLYNSILSSCTKIQNLIQARKCLDLMEKKMIGKSEVTYTALIKLAVLQKNLPAVHIIWREYIKLYSMSIIALRKFIWSFTRLGDLKSANRTLQQLVALATRENISIARTVYGKLYSTRLDIPVPANDGLGSTILDLWKSRQHSSCILSPSLHLLDTISASKEHKFICMDDKKAKNTDVNGLNGQKHSLLMKVLRWSFNDIIHGCAKEKNYMLAWKLMLQV 248
            + FSIMDFL ++R FYP LPLYNSIL S T+IQNL+QARKCLDLMEK+MIGKSEVTYTAL+KLAV+QKNLPAVHIIW+EYIKLYSMSI+ LRKF+WSFTRLGDLKSA RTLQQ+V+L  R NISIA+TVYGKLYSTRLDIPVP+N  LGSTILD+ KS+QH SCILSP ++L + +SASKE + ICMDDKKAK+ ++NGLNG+KHSL MKVLRWSFNDIIHGCA EKNYMLAWKL+LQ+
Sbjct:  142 KDFSIMDFLAESRHFYPVLPLYNSILRSYTEIQNLVQARKCLDLMEKQMIGKSEVTYTALLKLAVVQKNLPAVHIIWQEYIKLYSMSIVPLRKFVWSFTRLGDLKSAYRTLQQMVSLVMRGNISIAKTVYGKLYSTRLDIPVPSNGRLGSTILDIRKSKQHDSCILSP-MYLPNIVSASKEQQIICMDDKKAKSGEINGLNGKKHSLPMKVLRWSFNDIIHGCANEKNYMLAWKLILQL 379          
BLAST of Vfaba.Hedin2.R1.1g224080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A072UA70|A0A072UA70_MEDTR (PPR containing plant-like protein OS=Medicago truncatula OX=3880 GN=11412652 PE=4 SV=1)

HSP 1 Score: 394.815 bits (1013), Expect = 3.636e-129
Identity = 188/239 (78.66%), Postives = 216/239 (90.38%), Query Frame = 0
Query:   10 RAFSIMDFLGQNRRFYPGLPLYNSILSSCTKIQNLIQARKCLDLMEKKMIGKSEVTYTALIKLAVLQKNLPAVHIIWREYIKLYSMSIIALRKFIWSFTRLGDLKSANRTLQQLVALATRENISIARTVYGKLYSTRLDIPVPANDGLGSTILDLWKSRQHSSCILSPSLHLLDTISASKEHKFICMDDKKAKNTDVNGLNGQKHSLLMKVLRWSFNDIIHGCAKEKNYMLAWKLMLQV 248
            + FSIMDFL ++R FYP LPLYNSIL S T+IQNL+QARKCLDLMEK+MIGKSEVTYTAL+KLAV+QKNLPAVHIIW+EYIKLYSMSI+ LRKF+WSFTRLGDLKSA RTLQQ+V+L  R NISIA+TVYGKLYSTRLDIPVP+N  LGSTILD+ KS+QH SCILSP ++L + +SASKE + ICMDDKKAK+ ++NGLNG+KHSL MKVLRWSFNDIIHGCA EKNYMLAWKL+LQ+
Sbjct:  133 KDFSIMDFLAESRHFYPVLPLYNSILRSYTEIQNLVQARKCLDLMEKQMIGKSEVTYTALLKLAVVQKNLPAVHIIWQEYIKLYSMSIVPLRKFVWSFTRLGDLKSAYRTLQQMVSLVMRGNISIAKTVYGKLYSTRLDIPVPSNGRLGSTILDIRKSKQHDSCILSP-MYLPNIVSASKEQQIICMDDKKAKSGEINGLNGKKHSLPMKVLRWSFNDIIHGCANEKNYMLAWKLILQM 370          
BLAST of Vfaba.Hedin2.R1.1g224080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A072UCA2|A0A072UCA2_MEDTR (PPR containing plant-like protein OS=Medicago truncatula OX=3880 GN=11412652 PE=4 SV=1)

HSP 1 Score: 394.815 bits (1013), Expect = 4.406e-129
Identity = 188/239 (78.66%), Postives = 216/239 (90.38%), Query Frame = 0
Query:   10 RAFSIMDFLGQNRRFYPGLPLYNSILSSCTKIQNLIQARKCLDLMEKKMIGKSEVTYTALIKLAVLQKNLPAVHIIWREYIKLYSMSIIALRKFIWSFTRLGDLKSANRTLQQLVALATRENISIARTVYGKLYSTRLDIPVPANDGLGSTILDLWKSRQHSSCILSPSLHLLDTISASKEHKFICMDDKKAKNTDVNGLNGQKHSLLMKVLRWSFNDIIHGCAKEKNYMLAWKLMLQV 248
            + FSIMDFL ++R FYP LPLYNSIL S T+IQNL+QARKCLDLMEK+MIGKSEVTYTAL+KLAV+QKNLPAVHIIW+EYIKLYSMSI+ LRKF+WSFTRLGDLKSA RTLQQ+V+L  R NISIA+TVYGKLYSTRLDIPVP+N  LGSTILD+ KS+QH SCILSP ++L + +SASKE + ICMDDKKAK+ ++NGLNG+KHSL MKVLRWSFNDIIHGCA EKNYMLAWKL+LQ+
Sbjct:  142 KDFSIMDFLAESRHFYPVLPLYNSILRSYTEIQNLVQARKCLDLMEKQMIGKSEVTYTALLKLAVVQKNLPAVHIIWQEYIKLYSMSIVPLRKFVWSFTRLGDLKSAYRTLQQMVSLVMRGNISIAKTVYGKLYSTRLDIPVPSNGRLGSTILDIRKSKQHDSCILSP-MYLPNIVSASKEQQIICMDDKKAKSGEINGLNGKKHSLPMKVLRWSFNDIIHGCANEKNYMLAWKLILQM 379          
BLAST of Vfaba.Hedin2.R1.1g224080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0R0GGC6|A0A0R0GGC6_SOYBN (PPR_long domain-containing protein OS=Glycine max OX=3847 GN=100780147 PE=3 SV=1)

HSP 1 Score: 330.487 bits (846), Expect = 2.064e-107
Identity = 156/246 (63.41%), Postives = 200/246 (81.30%), Query Frame = 0
Query:    3 CMWARSRRAFSIMDFLGQNRRFYPGLPLYNSILSSCTKIQNLIQARKCLDLMEKKMIGKSEVTYTALIKLAVLQKNLPAVHIIWREYIKLYSMSIIALRKFIWSFTRLGDLKSANRTLQQLVALATRENISIARTVYGKLYSTRLDIPVPANDGLGSTILDLWKSRQHSSCILSPSLHLLDTISASKEHKFICMDDKKAKNTDVNGLNGQKHSLLMKVLRWSFNDIIHGCAKEKNYMLAWKLMLQV 248
            C       AF I+D+LG ++R YP LPLYNS+L SCT +QN+IQA +CLDLMEKKM+GK+EVTY  L+KLAVLQKNLPA H+IW+EYIK YSMSI+AL +FIWSFTRLGDL+SA + L ++++LATR NI IARTV+GK+Y+ RLDIPVP+N G GST+LDL ++++   C+  P +++ D+ISAS E + ICM +KKAK+T++ GLNGQKH LL K L  SF+DIIHGCAK+KN+MLA KLMLQ+
Sbjct:  134 CNGGYLEEAFDIVDYLGGSQRLYPVLPLYNSLLRSCTTMQNIIQASRCLDLMEKKMVGKNEVTYIELLKLAVLQKNLPAAHLIWQEYIKNYSMSIMALDRFIWSFTRLGDLESAYKILLEMISLATRGNIPIARTVHGKVYTNRLDIPVPSNKGPGSTMLDLKENKKLDYCMHPPLMYIPDSISASIEQQIICMGNKKAKSTELAGLNGQKHPLLKKALSRSFDDIIHGCAKQKNHMLARKLMLQM 379          
BLAST of Vfaba.Hedin2.R1.1g224080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A371IDB8|A0A371IDB8_MUCPR (Pentatricopeptide repeat-containing protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_02142 PE=4 SV=1)

HSP 1 Score: 336.265 bits (861), Expect = 2.905e-106
Identity = 173/271 (63.84%), Postives = 206/271 (76.01%), Query Frame = 0
Query:    3 CMWARSRRAFSIMDFLGQNRRFYPGLPLYNSILSSCTKIQNLIQARKCLDLMEKKMIGKSEVTYTALIK------------------------LAVLQKNLPAVHIIWREYIKLYSMSIIALRKFIWSFTRLGDLKSANRTLQQLVALATRENISIARTVYGKLYSTRLDIPVPANDGLGSTILDLWKSRQHSSCILSPSLHLLDTISASKEHKFICMDDKKAKNTDVNGLNGQKHSLLMKVLRWSFNDIIHGCAKEKNYMLAWKLMLQVD 249
            C       AF IMDF G+++  YP LPLYNS+L SCTK+Q++IQA KCL+LMEKKM+GKSEVTYT L+K                        LAVLQKNLPA H+IW+EYIK YS SIIALRKFIWSFTRLGDL+SA +TLQQ+V+LA R NISIARTVYGKLYSTRLDIPVP+N GLGSTILDL K+++  SCI  P ++L D+         IC+ +KKAK+ +++GLNGQKHSLLMKVLRWSF+DIIHGCAK+KNYMLA KLMLQ++
Sbjct:  142 CKGGYLEEAFDIMDFPGESQCLYPVLPLYNSLLRSCTKMQDIIQASKCLELMEKKMVGKSEVTYTKLLKVCRQKVLASFYYCFEEKISLFLRKLAVLQKNLPAAHLIWQEYIKNYSTSIIALRKFIWSFTRLGDLESAYKTLQQMVSLAIRGNISIARTVYGKLYSTRLDIPVPSNKGLGSTILDL-KNKKLDSCIHPPLMYLPDS---------ICVGNKKAKSAELDGLNGQKHSLLMKVLRWSFSDIIHGCAKQKNYMLARKLMLQME 402          
BLAST of Vfaba.Hedin2.R1.1g224080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0R0GQG4|A0A0R0GQG4_SOYBN (PPR_long domain-containing protein OS=Glycine max OX=3847 GN=100780147 PE=3 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 1.479e-105
Identity = 156/246 (63.41%), Postives = 200/246 (81.30%), Query Frame = 0
Query:    3 CMWARSRRAFSIMDFLGQNRRFYPGLPLYNSILSSCTKIQNLIQARKCLDLMEKKMIGKSEVTYTALIKLAVLQKNLPAVHIIWREYIKLYSMSIIALRKFIWSFTRLGDLKSANRTLQQLVALATRENISIARTVYGKLYSTRLDIPVPANDGLGSTILDLWKSRQHSSCILSPSLHLLDTISASKEHKFICMDDKKAKNTDVNGLNGQKHSLLMKVLRWSFNDIIHGCAKEKNYMLAWKLMLQV 248
            C       AF I+D+LG ++R YP LPLYNS+L SCT +QN+IQA +CLDLMEKKM+GK+EVTY  L+KLAVLQKNLPA H+IW+EYIK YSMSI+AL +FIWSFTRLGDL+SA + L ++++LATR NI IARTV+GK+Y+ RLDIPVP+N G GST+LDL ++++   C+  P +++ D+ISAS E + ICM +KKAK+T++ GLNGQKH LL K L  SF+DIIHGCAK+KN+MLA KLMLQ+
Sbjct:  134 CNGGYLEEAFDIVDYLGGSQRLYPVLPLYNSLLRSCTTMQNIIQASRCLDLMEKKMVGKNEVTYIELLKLAVLQKNLPAAHLIWQEYIKNYSMSIMALDRFIWSFTRLGDLESAYKILLEMISLATRGNIPIARTVHGKVYTNRLDIPVPSNKGPGSTMLDLKENKKLDYCMHPPLMYIPDSISASIEQQIICMGNKKAKSTELAGLNGQKHPLLKKALSRSFDDIIHGCAKQKNHMLARKLMLQM 379          
BLAST of Vfaba.Hedin2.R1.1g224080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0R0GGZ7|A0A0R0GGZ7_SOYBN (PPR_long domain-containing protein OS=Glycine max OX=3847 GN=100780147 PE=3 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 3.168e-105
Identity = 156/246 (63.41%), Postives = 200/246 (81.30%), Query Frame = 0
Query:    3 CMWARSRRAFSIMDFLGQNRRFYPGLPLYNSILSSCTKIQNLIQARKCLDLMEKKMIGKSEVTYTALIKLAVLQKNLPAVHIIWREYIKLYSMSIIALRKFIWSFTRLGDLKSANRTLQQLVALATRENISIARTVYGKLYSTRLDIPVPANDGLGSTILDLWKSRQHSSCILSPSLHLLDTISASKEHKFICMDDKKAKNTDVNGLNGQKHSLLMKVLRWSFNDIIHGCAKEKNYMLAWKLMLQV 248
            C       AF I+D+LG ++R YP LPLYNS+L SCT +QN+IQA +CLDLMEKKM+GK+EVTY  L+KLAVLQKNLPA H+IW+EYIK YSMSI+AL +FIWSFTRLGDL+SA + L ++++LATR NI IARTV+GK+Y+ RLDIPVP+N G GST+LDL ++++   C+  P +++ D+ISAS E + ICM +KKAK+T++ GLNGQKH LL K L  SF+DIIHGCAK+KN+MLA KLMLQ+
Sbjct:  134 CNGGYLEEAFDIVDYLGGSQRLYPVLPLYNSLLRSCTTMQNIIQASRCLDLMEKKMVGKNEVTYIELLKLAVLQKNLPAAHLIWQEYIKNYSMSIMALDRFIWSFTRLGDLESAYKILLEMISLATRGNIPIARTVHGKVYTNRLDIPVPSNKGPGSTMLDLKENKKLDYCMHPPLMYIPDSISASIEQQIICMGNKKAKSTELAGLNGQKHPLLKKALSRSFDDIIHGCAKQKNHMLARKLMLQM 379          
BLAST of Vfaba.Hedin2.R1.1g224080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445H9D5|A0A445H9D5_GLYSO (Pentatricopeptide repeat-containing protein isoform B OS=Glycine soja OX=3848 GN=D0Y65_039513 PE=4 SV=1)

HSP 1 Score: 330.872 bits (847), Expect = 1.246e-104
Identity = 156/246 (63.41%), Postives = 200/246 (81.30%), Query Frame = 0
Query:    3 CMWARSRRAFSIMDFLGQNRRFYPGLPLYNSILSSCTKIQNLIQARKCLDLMEKKMIGKSEVTYTALIKLAVLQKNLPAVHIIWREYIKLYSMSIIALRKFIWSFTRLGDLKSANRTLQQLVALATRENISIARTVYGKLYSTRLDIPVPANDGLGSTILDLWKSRQHSSCILSPSLHLLDTISASKEHKFICMDDKKAKNTDVNGLNGQKHSLLMKVLRWSFNDIIHGCAKEKNYMLAWKLMLQV 248
            C       AF I+D+LG ++R YP LPLYNS+L SCT +QN+IQA +CLDLMEKKM+GK+EVTY  L+KLAVLQKNLPA H+IW+EYIK YSMSI+AL +FIWSFTRLGDL+SA + L ++++LATR NI IARTV+GK+Y+ RLDIPVP+N G GST+LDL ++++   C+  P +++ D+ISAS E + ICM +KKAK+T++ GLNGQKH LL K L  SF+DIIHGCAK+KN+MLA KLMLQ+
Sbjct:  120 CNGGYLEEAFDIVDYLGGSQRLYPVLPLYNSLLRSCTTMQNIIQASRCLDLMEKKMVGKNEVTYIELLKLAVLQKNLPAAHLIWQEYIKNYSMSIMALDRFIWSFTRLGDLESAYKILLEMISLATRGNIPIARTVHGKVYTNRLDIPVPSNKGPGSTMLDLKENKKLDYCMHPPLMYIPDSISASIEQQIICMGNKKAKSTELAGLNGQKHPLLKKALSRSFDDIIHGCAKQKNHMLARKLMLQM 365          
BLAST of Vfaba.Hedin2.R1.1g224080.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9SGQ6|PP126_ARATH (Pentatricopeptide repeat-containing protein At1g76280 OS=Arabidopsis thaliana OX=3702 GN=At1g76280 PE=2 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 1.687e-49
Identity = 97/248 (39.11%), Postives = 143/248 (57.66%), Query Frame = 0
Query:    3 CMWARSRRAFSIMDFLGQNRRFYPGLPLYNSILSSCTKIQNLIQARKCLDLMEKKMIGKSEVTYTALIKLAVLQKNLPAVHIIWREYIKLYSMSIIALRKFIWSFTRLGDLKSANRTLQQLVALATRENISIARTVYGKLYSTRLDIPVPANDGLGSTILDLWKSRQHSSCILSPSLHLLDTISASKEHKFICMDDKKAKNTDVNGLNGQKHSLLMKVLRWSFNDIIHGCAKEKNYMLAWKLMLQVDI 250
            C      +A   +  + ++ R  P LP+YN  L +C + +++  A KCL+LM+++ +GK+ +TY AL+KLAV Q+NL  V+ IW+ Y+  Y++ I++LR+FIWSFTRLGDLKSA   LQ +V LA R    + ++  GKL+STRL IPVP+ D  GS       + +           ++D  S+SK                V    G    L ++VLRWSFND+IH C + KN  LA +LMLQ+ +
Sbjct:  142 CNGGHLDKASEFIHAVREDDRISPLLPIYNFFLGACARTRSVYHASKCLELMDQRRVGKNGITYVALLKLAVFQRNLSTVNDIWKHYVNHYNLDILSLRRFIWSFTRLGDLKSAYELLQHMVYLALRGEFFV-KSNRGKLHSTRLYIPVPSKDETGSEKFAFGVTDR-----------IVDCNSSSK----------------VALPKGHNKILAIRVLRWSFNDVIHACGQSKNSELAEQLMLQLKV 361          
BLAST of Vfaba.Hedin2.R1.1g224080.1 vs. Araport11
Match: AT1G76280.4 (| Tetratricopeptide repeat (TPR)-like superfamily protein | Chr1:28618703-28622581 REVERSE LENGTH=658 | 201606)

HSP 1 Score: 176.022 bits (445), Expect = 1.104e-50
Identity = 97/246 (39.43%), Postives = 142/246 (57.72%), Query Frame = 0
Query:    3 CMWARSRRAFSIMDFLGQNRRFYPGLPLYNSILSSCTKIQNLIQARKCLDLMEKKMIGKSEVTYTALIKLAVLQKNLPAVHIIWREYIKLYSMSIIALRKFIWSFTRLGDLKSANRTLQQLVALATRENISIARTVYGKLYSTRLDIPVPANDGLGSTILDLWKSRQHSSCILSPSLHLLDTISASKEHKFICMDDKKAKNTDVNGLNGQKHSLLMKVLRWSFNDIIHGCAKEKNYMLAWKLMLQV 248
            C      +A   +  + ++ R  P LP+YN  L +C + +++  A KCL+LM+++ +GK+ +TY AL+KLAV Q+NL  V+ IW+ Y+  Y++ I++LR+FIWSFTRLGDLKSA   LQ +V LA R    + ++  GKL+STRL IPVP+ D  GS       + +           ++D  S+SK                V    G    L ++VLRWSFND+IH C + KN  LA +LMLQ+
Sbjct:  142 CNGGHLDKASEFIHAVREDDRISPLLPIYNFFLGACARTRSVYHASKCLELMDQRRVGKNGITYVALLKLAVFQRNLSTVNDIWKHYVNHYNLDILSLRRFIWSFTRLGDLKSAYELLQHMVYLALRGEFFV-KSNRGKLHSTRLYIPVPSKDETGSEKFAFGVTDR-----------IVDCNSSSK----------------VALPKGHNKILAIRVLRWSFNDVIHACGQSKNSELAEQLMLQM 359          
BLAST of Vfaba.Hedin2.R1.1g224080.1 vs. Araport11
Match: AT1G76280.2 (| Tetratricopeptide repeat (TPR)-like superfamily protein | Chr1:28618365-28622581 REVERSE LENGTH=693 | 201606)

HSP 1 Score: 176.022 bits (445), Expect = 1.662e-50
Identity = 97/246 (39.43%), Postives = 142/246 (57.72%), Query Frame = 0
Query:    3 CMWARSRRAFSIMDFLGQNRRFYPGLPLYNSILSSCTKIQNLIQARKCLDLMEKKMIGKSEVTYTALIKLAVLQKNLPAVHIIWREYIKLYSMSIIALRKFIWSFTRLGDLKSANRTLQQLVALATRENISIARTVYGKLYSTRLDIPVPANDGLGSTILDLWKSRQHSSCILSPSLHLLDTISASKEHKFICMDDKKAKNTDVNGLNGQKHSLLMKVLRWSFNDIIHGCAKEKNYMLAWKLMLQV 248
            C      +A   +  + ++ R  P LP+YN  L +C + +++  A KCL+LM+++ +GK+ +TY AL+KLAV Q+NL  V+ IW+ Y+  Y++ I++LR+FIWSFTRLGDLKSA   LQ +V LA R    + ++  GKL+STRL IPVP+ D  GS       + +           ++D  S+SK                V    G    L ++VLRWSFND+IH C + KN  LA +LMLQ+
Sbjct:  142 CNGGHLDKASEFIHAVREDDRISPLLPIYNFFLGACARTRSVYHASKCLELMDQRRVGKNGITYVALLKLAVFQRNLSTVNDIWKHYVNHYNLDILSLRRFIWSFTRLGDLKSAYELLQHMVYLALRGEFFV-KSNRGKLHSTRLYIPVPSKDETGSEKFAFGVTDR-----------IVDCNSSSK----------------VALPKGHNKILAIRVLRWSFNDVIHACGQSKNSELAEQLMLQM 359          
BLAST of Vfaba.Hedin2.R1.1g224080.1 vs. Araport11
Match: AT1G76280.1 (| Tetratricopeptide repeat (TPR)-like superfamily protein | Chr1:28617948-28622581 REVERSE LENGTH=773 | 201606)

HSP 1 Score: 176.792 bits (447), Expect = 1.726e-50
Identity = 97/248 (39.11%), Postives = 143/248 (57.66%), Query Frame = 0
Query:    3 CMWARSRRAFSIMDFLGQNRRFYPGLPLYNSILSSCTKIQNLIQARKCLDLMEKKMIGKSEVTYTALIKLAVLQKNLPAVHIIWREYIKLYSMSIIALRKFIWSFTRLGDLKSANRTLQQLVALATRENISIARTVYGKLYSTRLDIPVPANDGLGSTILDLWKSRQHSSCILSPSLHLLDTISASKEHKFICMDDKKAKNTDVNGLNGQKHSLLMKVLRWSFNDIIHGCAKEKNYMLAWKLMLQVDI 250
            C      +A   +  + ++ R  P LP+YN  L +C + +++  A KCL+LM+++ +GK+ +TY AL+KLAV Q+NL  V+ IW+ Y+  Y++ I++LR+FIWSFTRLGDLKSA   LQ +V LA R    + ++  GKL+STRL IPVP+ D  GS       + +           ++D  S+SK                V    G    L ++VLRWSFND+IH C + KN  LA +LMLQ+ +
Sbjct:  142 CNGGHLDKASEFIHAVREDDRISPLLPIYNFFLGACARTRSVYHASKCLELMDQRRVGKNGITYVALLKLAVFQRNLSTVNDIWKHYVNHYNLDILSLRRFIWSFTRLGDLKSAYELLQHMVYLALRGEFFV-KSNRGKLHSTRLYIPVPSKDETGSEKFAFGVTDR-----------IVDCNSSSK----------------VALPKGHNKILAIRVLRWSFNDVIHACGQSKNSELAEQLMLQLKV 361          
BLAST of Vfaba.Hedin2.R1.1g224080.1 vs. Araport11
Match: AT1G76280.3 (| Tetratricopeptide repeat (TPR)-like superfamily protein | Chr1:28617948-28622581 REVERSE LENGTH=801 | 201606)

HSP 1 Score: 176.022 bits (445), Expect = 3.229e-50
Identity = 97/246 (39.43%), Postives = 142/246 (57.72%), Query Frame = 0
Query:    3 CMWARSRRAFSIMDFLGQNRRFYPGLPLYNSILSSCTKIQNLIQARKCLDLMEKKMIGKSEVTYTALIKLAVLQKNLPAVHIIWREYIKLYSMSIIALRKFIWSFTRLGDLKSANRTLQQLVALATRENISIARTVYGKLYSTRLDIPVPANDGLGSTILDLWKSRQHSSCILSPSLHLLDTISASKEHKFICMDDKKAKNTDVNGLNGQKHSLLMKVLRWSFNDIIHGCAKEKNYMLAWKLMLQV 248
            C      +A   +  + ++ R  P LP+YN  L +C + +++  A KCL+LM+++ +GK+ +TY AL+KLAV Q+NL  V+ IW+ Y+  Y++ I++LR+FIWSFTRLGDLKSA   LQ +V LA R    + ++  GKL+STRL IPVP+ D  GS       + +           ++D  S+SK                V    G    L ++VLRWSFND+IH C + KN  LA +LMLQ+
Sbjct:  138 CNGGHLDKASEFIHAVREDDRISPLLPIYNFFLGACARTRSVYHASKCLELMDQRRVGKNGITYVALLKLAVFQRNLSTVNDIWKHYVNHYNLDILSLRRFIWSFTRLGDLKSAYELLQHMVYLALRGEFFV-KSNRGKLHSTRLYIPVPSKDETGSEKFAFGVTDR-----------IVDCNSSSK----------------VALPKGHNKILAIRVLRWSFNDVIHACGQSKNSELAEQLMLQM 355          
BLAST of Vfaba.Hedin2.R1.1g224080.1 vs. Araport11
Match: AT1G76280.5 (| Tetratricopeptide repeat (TPR)-like superfamily protein | Chr1:28617948-28622581 REVERSE LENGTH=805 | 201606)

HSP 1 Score: 176.022 bits (445), Expect = 3.798e-50
Identity = 97/246 (39.43%), Postives = 142/246 (57.72%), Query Frame = 0
Query:    3 CMWARSRRAFSIMDFLGQNRRFYPGLPLYNSILSSCTKIQNLIQARKCLDLMEKKMIGKSEVTYTALIKLAVLQKNLPAVHIIWREYIKLYSMSIIALRKFIWSFTRLGDLKSANRTLQQLVALATRENISIARTVYGKLYSTRLDIPVPANDGLGSTILDLWKSRQHSSCILSPSLHLLDTISASKEHKFICMDDKKAKNTDVNGLNGQKHSLLMKVLRWSFNDIIHGCAKEKNYMLAWKLMLQV 248
            C      +A   +  + ++ R  P LP+YN  L +C + +++  A KCL+LM+++ +GK+ +TY AL+KLAV Q+NL  V+ IW+ Y+  Y++ I++LR+FIWSFTRLGDLKSA   LQ +V LA R    + ++  GKL+STRL IPVP+ D  GS       + +           ++D  S+SK                V    G    L ++VLRWSFND+IH C + KN  LA +LMLQ+
Sbjct:  142 CNGGHLDKASEFIHAVREDDRISPLLPIYNFFLGACARTRSVYHASKCLELMDQRRVGKNGITYVALLKLAVFQRNLSTVNDIWKHYVNHYNLDILSLRRFIWSFTRLGDLKSAYELLQHMVYLALRGEFFV-KSNRGKLHSTRLYIPVPSKDETGSEKFAFGVTDR-----------IVDCNSSSK----------------VALPKGHNKILAIRVLRWSFNDVIHACGQSKNSELAEQLMLQM 359          
The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.1g224080.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A1S2Z010|A0A1S2Z010_CICAR1.761e-13680.49pentatricopeptide repeat-containing protein At1g76... [more]
tr|A0A1S3EFQ0|A0A1S3EFQ0_CICAR2.968e-13680.49pentatricopeptide repeat-containing protein At1g76... [more]
tr|G7KPS9|G7KPS9_MEDTR1.538e-12978.66PPR containing plant-like protein OS=Medicago trun... [more]
tr|A0A072UA70|A0A072UA70_MEDTR3.636e-12978.66PPR containing plant-like protein OS=Medicago trun... [more]
tr|A0A072UCA2|A0A072UCA2_MEDTR4.406e-12978.66PPR containing plant-like protein OS=Medicago trun... [more]
tr|A0A0R0GGC6|A0A0R0GGC6_SOYBN2.064e-10763.41PPR_long domain-containing protein OS=Glycine max ... [more]
tr|A0A371IDB8|A0A371IDB8_MUCPR2.905e-10663.84Pentatricopeptide repeat-containing protein (Fragm... [more]
tr|A0A0R0GQG4|A0A0R0GQG4_SOYBN1.479e-10563.41PPR_long domain-containing protein OS=Glycine max ... [more]
tr|A0A0R0GGZ7|A0A0R0GGZ7_SOYBN3.168e-10563.41PPR_long domain-containing protein OS=Glycine max ... [more]
tr|A0A445H9D5|A0A445H9D5_GLYSO1.246e-10463.41Pentatricopeptide repeat-containing protein isofor... [more]
back to top
BLAST of Vfaba.Hedin2.R1.1g224080.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
sp|Q9SGQ6|PP126_ARATH1.687e-4939.11Pentatricopeptide repeat-containing protein At1g76... [more]
back to top
BLAST of Vfaba.Hedin2.R1.1g224080.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11)
Total hits: 5
Match NameE-valueIdentityDescription
AT1G76280.41.104e-5039.43| Tetratricopeptide repeat (TPR)-like superfamily ... [more]
AT1G76280.21.662e-5039.43| Tetratricopeptide repeat (TPR)-like superfamily ... [more]
AT1G76280.11.726e-5039.11| Tetratricopeptide repeat (TPR)-like superfamily ... [more]
AT1G76280.33.229e-5039.43| Tetratricopeptide repeat (TPR)-like superfamily ... [more]
AT1G76280.53.798e-5039.43| Tetratricopeptide repeat (TPR)-like superfamily ... [more]
back to top
InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 30..72
e-value: 0.0062
score: 16.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 4..144
e-value: 4.3E-9
score: 38.3
NoneNo IPR availablePANTHERPTHR47859PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEINcoord: 8..248

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vfaba.Hedin2.R1.1g224080.1_vfh_v1 ID=Vfaba.Hedin2.R1.1g224080.1_vfh_v1; Name=Vfaba.Hedin2.R1.1g224080.1; organism=Vicia faba; type=mRNA; length=765bp
ATGCAATGCATGTGGGCGAGAAGTAGAAGGGCCTTTAGTATCATGGATTT
TCTAGGACAAAATCGGCGTTTCTATCCAGGTCTCCCACTGTACAATAGTA
TTTTAAGCTCCTGCACAAAAATCCAGAATTTAATTCAAGCTAGAAAATGT
TTGGACTTGATGGAAAAGAAAATGATAGGAAAGAGTGAAGTTACGTATAC
CGCACTTATCAAGCTTGCAGTTTTGCAGAAAAACTTGCCTGCAGTCCATA
TAATTTGGCGGGAGTATATCAAGCTTTATAGTATGAGTATCATTGCTCTG
CGTAAATTTATTTGGTCATTTACAAGGTTGGGAGATCTAAAATCTGCGAA
TAGAACACTACAACAGTTGGTGGCATTAGCCACAAGGGAAAACATTTCTA
TTGCTAGAACAGTTTATGGGAAGTTGTATTCTACTAGATTGGACATTCCT
GTTCCTGCAAATGACGGGCTAGGATCAACCATATTGGACCTGTGGAAGAG
CAGACAACATAGCTCTTGTATACTCTCTCCTAGTTTGCATTTACTAGACA
CTATTTCTGCAAGTAAGGAGCATAAATTTATCTGTATGGATGATAAAAAA
GCCAAGAATACTGATGTAAATGGGCTGAATGGACAAAAGCACTCACTGCT
TATGAAGGTTCTTAGGTGGTCTTTTAATGATATAATACATGGGTGTGCAA
AAGAAAAAAACTATATGCTTGCTTGGAAGCTTATGTTACAGGTAGACATC
CGACTAAGCTGTTAA
back to top

protein sequence of Vfaba.Hedin2.R1.1g224080.1_vfh_v1

>Vfaba.Hedin2.R1.1g224080.1_vfh_v1 ID=Vfaba.Hedin2.R1.1g224080.1_vfh_v1; Name=Vfaba.Hedin2.R1.1g224080.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=254bp
MQCMWARSRRAFSIMDFLGQNRRFYPGLPLYNSILSSCTKIQNLIQARKC
LDLMEKKMIGKSEVTYTALIKLAVLQKNLPAVHIIWREYIKLYSMSIIAL
RKFIWSFTRLGDLKSANRTLQQLVALATRENISIARTVYGKLYSTRLDIP
VPANDGLGSTILDLWKSRQHSSCILSPSLHLLDTISASKEHKFICMDDKK
AKNTDVNGLNGQKHSLLMKVLRWSFNDIIHGCAKEKNYMLAWKLMLQVDI
RLSC
back to top

mRNA from alignment at chr1L:200056690..200058485+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vfaba.Hedin2.R1.1g224080.1_vfh_v1 ID=Vfaba.Hedin2.R1.1g224080.1_vfh_v1; Name=Vfaba.Hedin2.R1.1g224080.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr1L:200056690..200058485+ (Vicia faba
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_rpt
IPR011990TPR-like_helical_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding