Vfaba.Hedin2.R1.1g224280.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Vfaba.Hedin2.R1.1g224280.1 vs. UniProtKB/TrEMBL
Match: tr|B7FN94|B7FN94_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=11442322 PE=2 SV=1) HSP 1 Score: 306.99 bits (785), Expect = 8.002e-105 Identity = 155/171 (90.64%), Postives = 160/171 (93.57%), Query Frame = 0 Query: 1 MSVAFTNLSWWLWNEKHQESRVP-KGGSKNSSTGLNMLESEVMRFPLVQANIGSSSRKVKRKWNSREER-KVDREYDVVLVPSDGGCVSGSESDDSDWSIGWLEPHGPGFPSDGETDNSFAVLVPCYGRDYGRIQEDNKSNLLNGVGVFLDSYSDESKKYVENWLSSLRNT 169 MSVAFTNLSWWLW+ KHQE R+ KG S NSST LNMLESEVMRFPLVQANIGSSS+KVKRKWNSREER KVDREYDVVLVPSDGGCVSGSESDDSDWSIGWLEPHGPGFPSD ETDNSFAVLVPCYGRDYGRI+ED KSNLLNGVG FLDSYSDESKKYVENWLSS+RNT Sbjct: 1 MSVAFTNLSWWLWSGKHQEPRISSKGTSINSSTDLNMLESEVMRFPLVQANIGSSSKKVKRKWNSREERRKVDREYDVVLVPSDGGCVSGSESDDSDWSIGWLEPHGPGFPSDDETDNSFAVLVPCYGRDYGRIEEDTKSNLLNGVGHFLDSYSDESKKYVENWLSSIRNT 171
BLAST of Vfaba.Hedin2.R1.1g224280.1 vs. UniProtKB/TrEMBL
Match: tr|A0A151RXF6|A0A151RXF6_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_031117 PE=4 SV=1) HSP 1 Score: 293.508 bits (750), Expect = 1.564e-99 Identity = 145/169 (85.80%), Postives = 154/169 (91.12%), Query Frame = 0 Query: 1 MSVAFTNLSWWLWNEKHQESRVPKGGSKNSSTGLNMLESEVMRFPLVQANIGSSSRKVKRKWNSREERKVDREYDVVLVPSDGGCVSGSESDDSDWSIGWLEPHGPGFPSDGETDNSFAVLVPCYGRDYGRIQEDNKSNLLNGVGVFLDSYSDESKKYVENWLSSLRNT 169 MSVAFTNLSWWLW+ KHQE R+P G S NSS N+ ES+V+RFPLVQAN+GSSSRKVKRKW+SREERKVDREYDVVLVPSDGGCVSGSESDDSDWSIGWLEPHGPGFPSD ETDNSFAVLVPCYG+DYGRI ED KSNLL GVG F DSYSDESKKYVE+WLSSLRNT Sbjct: 1 MSVAFTNLSWWLWSGKHQEPRIPNGSSINSSADSNLWESDVLRFPLVQANVGSSSRKVKRKWHSREERKVDREYDVVLVPSDGGCVSGSESDDSDWSIGWLEPHGPGFPSDDETDNSFAVLVPCYGQDYGRIVEDPKSNLLRGVGNFPDSYSDESKKYVEDWLSSLRNT 169
BLAST of Vfaba.Hedin2.R1.1g224280.1 vs. UniProtKB/TrEMBL
Match: tr|V7B644|V7B644_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_008G181900g PE=4 SV=1) HSP 1 Score: 292.738 bits (748), Expect = 2.767e-99 Identity = 145/169 (85.80%), Postives = 153/169 (90.53%), Query Frame = 0 Query: 1 MSVAFTNLSWWLWNEKHQESRVPKGGSKNSSTGLNMLESEVMRFPLVQANIGSSSRKVKRKWNSREERKVDREYDVVLVPSDGGCVSGSESDDSDWSIGWLEPHGPGFPSDGETDNSFAVLVPCYGRDYGRIQEDNKSNLLNGVGVFLDSYSDESKKYVENWLSSLRNT 169 MSVAFTNLSWWLW+ KHQE R+P G S NSS N+ ES+V+RFPLVQ N+GSSSRKVKRKW+SREERKVDREYDVVLVPSDGGCVSGSESDDSDWSIGWLEPHGPGFPSD ETDNSFAVLVPCYGRDYGRI ED KSNLL GVG F DSYSDESKKYVE+WLSSLRNT Sbjct: 1 MSVAFTNLSWWLWSGKHQEPRIPNGSSINSSADSNLWESDVLRFPLVQTNMGSSSRKVKRKWHSREERKVDREYDVVLVPSDGGCVSGSESDDSDWSIGWLEPHGPGFPSDDETDNSFAVLVPCYGRDYGRILEDPKSNLLRGVGNFPDSYSDESKKYVEDWLSSLRNT 169
BLAST of Vfaba.Hedin2.R1.1g224280.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2XJV0|A0A1S2XJV0_CICAR (uncharacterized protein LOC101504435 OS=Cicer arietinum OX=3827 GN=LOC101504435 PE=4 SV=1) HSP 1 Score: 291.967 bits (746), Expect = 7.128e-99 Identity = 146/171 (85.38%), Postives = 157/171 (91.81%), Query Frame = 0 Query: 1 MSVAFTNLSWWLWNEKHQE-SRVPKGGSKNSSTGLNMLESEVMRFPLVQANIGSSSRKVKRKWNSREERKVDREYDVVLVPSDGGCVSGSESDDSDWSIGWLEPHGPGFPS-DGETDNSFAVLVPCYGRDYGRIQEDNKSNLLNGVGVFLDSYSDESKKYVENWLSSLRNT 169 MS+AFTNLSWWLW+ KHQE +R+P G S NSST LNM ESEVMRFPLVQAN+GSSSR+VKRKWNSREERKVDREYDVVLVPSDGGCVSGSESD SDWSIGW EPHGPGFPS D ETDNSFAVLVPCYGRDYGR++E K+NLLNGVG FLD+YSDESKKYVENWL+SLRNT Sbjct: 1 MSLAFTNLSWWLWSGKHQEPTRIPNGSSINSSTDLNMWESEVMRFPLVQANMGSSSRRVKRKWNSREERKVDREYDVVLVPSDGGCVSGSESDGSDWSIGWCEPHGPGFPSDDDETDNSFAVLVPCYGRDYGRVEEGTKNNLLNGVGNFLDNYSDESKKYVENWLTSLRNT 171
BLAST of Vfaba.Hedin2.R1.1g224280.1 vs. UniProtKB/TrEMBL
Match: tr|I1JH03|I1JH03_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100812670 PE=4 SV=1) HSP 1 Score: 288.5 bits (737), Expect = 1.655e-97 Identity = 142/169 (84.02%), Postives = 152/169 (89.94%), Query Frame = 0 Query: 1 MSVAFTNLSWWLWNEKHQESRVPKGGSKNSSTGLNMLESEVMRFPLVQANIGSSSRKVKRKWNSREERKVDREYDVVLVPSDGGCVSGSESDDSDWSIGWLEPHGPGFPSDGETDNSFAVLVPCYGRDYGRIQEDNKSNLLNGVGVFLDSYSDESKKYVENWLSSLRNT 169 MSVAFTNLSWWLW+ KHQE R+P G S NSS N+ ES+V+RFPLVQAN+GSSSRKVKRKW+SR ERKVDREYDVVLVPSDGGCVSGSESDDSDWSIGWLEPHGPGFPSD ETDNSFAV+VPCYGRDYGRI ED K NLL GVG F DSYSDESKK+VE+WLSSLRNT Sbjct: 1 MSVAFTNLSWWLWSGKHQEPRIPNGPSINSSADSNLWESDVLRFPLVQANVGSSSRKVKRKWHSRGERKVDREYDVVLVPSDGGCVSGSESDDSDWSIGWLEPHGPGFPSDDETDNSFAVIVPCYGRDYGRIMEDPKGNLLRGVGNFPDSYSDESKKFVEDWLSSLRNT 169
BLAST of Vfaba.Hedin2.R1.1g224280.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445LS86|A0A445LS86_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_004656 PE=4 SV=1) HSP 1 Score: 288.5 bits (737), Expect = 1.655e-97 Identity = 142/169 (84.02%), Postives = 152/169 (89.94%), Query Frame = 0 Query: 1 MSVAFTNLSWWLWNEKHQESRVPKGGSKNSSTGLNMLESEVMRFPLVQANIGSSSRKVKRKWNSREERKVDREYDVVLVPSDGGCVSGSESDDSDWSIGWLEPHGPGFPSDGETDNSFAVLVPCYGRDYGRIQEDNKSNLLNGVGVFLDSYSDESKKYVENWLSSLRNT 169 MSVAFTNLSWWLW+ KHQE R+P G S NSS N+ ES+V+RFPLVQAN+GSSSRKVKRKW+SR ERKVDREYDVVLVPSDGGCVSGSESDDSDWSIGWLEPHGPGFPSD ETDNSFAV+VPCYGRDYGRI ED K NLL GVG F DSYSDESKK+VE+WLSSLRNT Sbjct: 1 MSVAFTNLSWWLWSGKHQEPRIPNGPSINSSADSNLWESDVLRFPLVQANVGSSSRKVKRKWHSRGERKVDREYDVVLVPSDGGCVSGSESDDSDWSIGWLEPHGPGFPSDDETDNSFAVIVPCYGRDYGRIMEDPKGNLLRGVGNFPDSYSDESKKFVEDWLSSLRNT 169
BLAST of Vfaba.Hedin2.R1.1g224280.1 vs. UniProtKB/TrEMBL
Match: tr|A0A371I5Y6|A0A371I5Y6_MUCPR (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_05029 PE=4 SV=1) HSP 1 Score: 288.115 bits (736), Expect = 1.950e-97 Identity = 142/169 (84.02%), Postives = 152/169 (89.94%), Query Frame = 0 Query: 1 MSVAFTNLSWWLWNEKHQESRVPKGGSKNSSTGLNMLESEVMRFPLVQANIGSSSRKVKRKWNSREERKVDREYDVVLVPSDGGCVSGSESDDSDWSIGWLEPHGPGFPSDGETDNSFAVLVPCYGRDYGRIQEDNKSNLLNGVGVFLDSYSDESKKYVENWLSSLRNT 169 MSVAFTNLSWWLW+ KHQE R+ G S NS N+ ES+V+RFPLVQAN+GSSSR+VKRKW+SREERKVDREYD+VLVPSDGGCVSGSESDDSDWSIGWLEPHGPGFPSD ETDNSFAVLVPCYGRDYGRI ED KSNLL GVG F DSYSDESKKYVE+WLSSLRNT Sbjct: 1 MSVAFTNLSWWLWSGKHQEPRITNGPSINSPADSNLWESDVLRFPLVQANVGSSSRRVKRKWHSREERKVDREYDIVLVPSDGGCVSGSESDDSDWSIGWLEPHGPGFPSDDETDNSFAVLVPCYGRDYGRIVEDPKSNLLRGVGNFPDSYSDESKKYVEDWLSSLRNT 169
BLAST of Vfaba.Hedin2.R1.1g224280.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3RM68|A0A0S3RM68_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.03G150000 PE=4 SV=1) HSP 1 Score: 278.485 bits (711), Expect = 1.485e-93 Identity = 144/169 (85.21%), Postives = 152/169 (89.94%), Query Frame = 0 Query: 1 MSVAFTNLSWWLWNEKHQESRVPKGGSKNSSTGLNMLESEVMRFPLVQANIGSSSRKVKRKWNSREERKVDREYDVVLVPSDGGCVSGSESDDSDWSIGWLEPHGPGFPSDGETDNSFAVLVPCYGRDYGRIQEDNKSNLLNGVGVFLDSYSDESKKYVENWLSSLRNT 169 MSVAFTNLSWWLW+ KHQE R+ G S NSS N+ ES+V+RFPLVQ N+GSSSRKVKRKW+SREERKVDREYDVVLVPSDGGCVSGSESDDSDWSIGWLEPHGPGFPSD ETDNSFAVLVPCYGRDYGRI ED KSNLL GVG F DSYSDESKKYVE+WLSSLRNT Sbjct: 1 MSVAFTNLSWWLWSGKHQEPRISNGSSINSSADSNLWESDVLRFPLVQTNMGSSSRKVKRKWHSREERKVDREYDVVLVPSDGGCVSGSESDDSDWSIGWLEPHGPGFPSDDETDNSFAVLVPCYGRDYGRIVEDPKSNLLRGVGNFPDSYSDESKKYVEDWLSSLRNT 169
BLAST of Vfaba.Hedin2.R1.1g224280.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3VVJ8|A0A1S3VVJ8_VIGRR (uncharacterized protein LOC106778918 OS=Vigna radiata var. radiata OX=3916 GN=LOC106778918 PE=4 SV=1) HSP 1 Score: 277.715 bits (709), Expect = 2.714e-93 Identity = 143/169 (84.62%), Postives = 152/169 (89.94%), Query Frame = 0 Query: 1 MSVAFTNLSWWLWNEKHQESRVPKGGSKNSSTGLNMLESEVMRFPLVQANIGSSSRKVKRKWNSREERKVDREYDVVLVPSDGGCVSGSESDDSDWSIGWLEPHGPGFPSDGETDNSFAVLVPCYGRDYGRIQEDNKSNLLNGVGVFLDSYSDESKKYVENWLSSLRNT 169 MSVAFTNLSWWLW+ KHQE R+ G S NSS N+ ES+V+RFPLVQ N+GSSSRKVKRKW+SREERKVDREYDVVLVPSDGGCVSGSESDDSDWSIGWLEPHGPGFPSD ETDNSFAVLVPCYGRDYGRI ED KSNLL GVG F DSYSD+SKKYVE+WLSSLRNT Sbjct: 1 MSVAFTNLSWWLWSGKHQEPRISNGSSINSSADSNLWESDVLRFPLVQTNMGSSSRKVKRKWHSREERKVDREYDVVLVPSDGGCVSGSESDDSDWSIGWLEPHGPGFPSDDETDNSFAVLVPCYGRDYGRIVEDPKSNLLRGVGNFPDSYSDQSKKYVEDWLSSLRNT 169
BLAST of Vfaba.Hedin2.R1.1g224280.1 vs. UniProtKB/TrEMBL
Match: tr|I3STS1|I3STS1_LOTJA (Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1) HSP 1 Score: 273.478 bits (698), Expect = 1.471e-91 Identity = 136/170 (80.00%), Postives = 150/170 (88.24%), Query Frame = 0 Query: 1 MSVAFTNLSWWLWNEKHQESRVPKGGSKNSSTGLNMLESEVMRFPLVQANIGSSSRKVKRKWNSREERKVDREYDVVLVPSDGGCVSGSESDDSDWSIGWLEPHGPGFPSDGETDNSFAVLVPCYGRDYGR-IQEDNKSNLLNGVGVFLDSYSDESKKYVENWLSSLRNT 169 MSVAFTNLSWW + K QESR+P G S N ST LN+ ESE +RFPLV+AN+GSSSR+VKRKW+SREERKVDREYDVVLVPSDGGCVSGSESDDSDWSIGWLEPHGPG PSD ETDNSFAVLVPCYGRDY R ++ED KSNL+NGV F DSYSD SKK+VENW+SSL+NT Sbjct: 1 MSVAFTNLSWWFPSGKQQESRIPNGSSVNPSTDLNIWESEFLRFPLVRANVGSSSRRVKRKWHSREERKVDREYDVVLVPSDGGCVSGSESDDSDWSIGWLEPHGPGLPSDDETDNSFAVLVPCYGRDYDRMMEEDPKSNLMNGVRNFPDSYSDASKKFVENWISSLQNT 170
BLAST of Vfaba.Hedin2.R1.1g224280.1 vs. Araport11
Match: AT4G38060.4 (| hypothetical protein | Chr4:17873709-17874379 REVERSE LENGTH=136 | 201606) HSP 1 Score: 65.855 bits (159), Expect = 4.938e-14 Identity = 46/131 (35.11%), Postives = 64/131 (48.85%), Query Frame = 0 Query: 38 ESEVMRFPLVQANIGSSSRKVKRKWNSREERKVDREYDVVLVPSDGGCVSGSESDDSDWSIGWLEPHGPGFPSDGE-TDNSFAVLVPCYGRDYGRIQEDNKSNLLNGVGVFLDSYSDESKKYVENWLSSLR 167 E+E ++FP A + N R+E +++ D V+G D +WS+GW EPHGP F SD E D F VLVPCY R +N + LL+ V + + K Y+E WLSSL+ Sbjct: 21 ETEALKFPTKIARV-----------NKRKELELESFGSSGSESVD--VVAG---DGPEWSVGWTEPHGPDFQSDDEGNDGGFLVLVPCY-RAVVEGSSNNNNQLLSAVKNLPNGLPPDGKNYMEQWLSSLQ 134
BLAST of Vfaba.Hedin2.R1.1g224280.1 vs. Araport11
Match: AT4G38060.3 (| hypothetical protein | Chr4:17873709-17874379 REVERSE LENGTH=136 | 201606) HSP 1 Score: 65.855 bits (159), Expect = 4.938e-14 Identity = 46/131 (35.11%), Postives = 64/131 (48.85%), Query Frame = 0 Query: 38 ESEVMRFPLVQANIGSSSRKVKRKWNSREERKVDREYDVVLVPSDGGCVSGSESDDSDWSIGWLEPHGPGFPSDGE-TDNSFAVLVPCYGRDYGRIQEDNKSNLLNGVGVFLDSYSDESKKYVENWLSSLR 167 E+E ++FP A + N R+E +++ D V+G D +WS+GW EPHGP F SD E D F VLVPCY R +N + LL+ V + + K Y+E WLSSL+ Sbjct: 21 ETEALKFPTKIARV-----------NKRKELELESFGSSGSESVD--VVAG---DGPEWSVGWTEPHGPDFQSDDEGNDGGFLVLVPCY-RAVVEGSSNNNNQLLSAVKNLPNGLPPDGKNYMEQWLSSLQ 134
BLAST of Vfaba.Hedin2.R1.1g224280.1 vs. Araport11
Match: AT4G38060.2 (| hypothetical protein | Chr4:17873709-17874379 REVERSE LENGTH=136 | 201606) HSP 1 Score: 65.855 bits (159), Expect = 4.938e-14 Identity = 46/131 (35.11%), Postives = 64/131 (48.85%), Query Frame = 0 Query: 38 ESEVMRFPLVQANIGSSSRKVKRKWNSREERKVDREYDVVLVPSDGGCVSGSESDDSDWSIGWLEPHGPGFPSDGE-TDNSFAVLVPCYGRDYGRIQEDNKSNLLNGVGVFLDSYSDESKKYVENWLSSLR 167 E+E ++FP A + N R+E +++ D V+G D +WS+GW EPHGP F SD E D F VLVPCY R +N + LL+ V + + K Y+E WLSSL+ Sbjct: 21 ETEALKFPTKIARV-----------NKRKELELESFGSSGSESVD--VVAG---DGPEWSVGWTEPHGPDFQSDDEGNDGGFLVLVPCY-RAVVEGSSNNNNQLLSAVKNLPNGLPPDGKNYMEQWLSSLQ 134
BLAST of Vfaba.Hedin2.R1.1g224280.1 vs. Araport11
Match: AT5G65480.1 (| hypothetical protein | Chr5:26176827-26177434 FORWARD LENGTH=153 | 201606) HSP 1 Score: 56.6102 bits (135), Expect = 2.011e-10 Identity = 32/83 (38.55%), Postives = 47/83 (56.63%), Query Frame = 0 Query: 84 GCVSGSESDDSDWSIGWLEPHGPGFPSDGETDNSFAVLVPCYGRDYGRIQEDNKSNLLNGVGVFLDSYSDESKKYVENWLSSL 166 G V E DD +WSIGW+EPHGPGF ++ + F VLVP Y ++ + + + + NG F + + K +E WLSS+ Sbjct: 76 GNVVFPEPDDPEWSIGWVEPHGPGFKAEDDDCGGFVVLVPL----YKKVMDGSGNQIPNG---FFSPAAPDGKN-MEQWLSSM 150 The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.1g224280.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL) Total hits: 10
BLAST of Vfaba.Hedin2.R1.1g224280.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot) Total hits: 0
BLAST of Vfaba.Hedin2.R1.1g224280.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11) Total hits: 4
InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vfaba.Hedin2.R1.1g224280.1_vfh_v1 ID=Vfaba.Hedin2.R1.1g224280.1_vfh_v1; Name=Vfaba.Hedin2.R1.1g224280.1; organism=Vicia faba; type=mRNA; length=510bpback to top protein sequence of Vfaba.Hedin2.R1.1g224280.1_vfh_v1 >Vfaba.Hedin2.R1.1g224280.1_vfh_v1 ID=Vfaba.Hedin2.R1.1g224280.1_vfh_v1; Name=Vfaba.Hedin2.R1.1g224280.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=169bpback to top mRNA from alignment at chr1L:201529542..201530350+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>Vfaba.Hedin2.R1.1g224280.1_vfh_v1 ID=Vfaba.Hedin2.R1.1g224280.1_vfh_v1; Name=Vfaba.Hedin2.R1.1g224280.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr1L:201529542..201530350+ (Vicia fababack to top |