Vfaba.Hedin2.R1.2g123240.1

Transcript Overview
NameVfaba.Hedin2.R1.2g123240.1
Unique NameVfaba.Hedin2.R1.2g123240.1_vfh_v1
TypemRNA
OrganismVicia faba (Faba bean)
Sequence length351
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr2chromosomechr2:720768465..720768815 +Vicia faba inbred line Hedin/2 genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vfhzwsR231Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
asvfhL592Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvfhL782Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cavfhL379Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvfhL0731Cajanus cajan Asha genome v1.0Cajanus cajan
pvvfhL798Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
tifvfhL144Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuR284Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vfhvuR311Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caivfhL497Cicer arietinum ICC 4958 genome v2Cicer arietinum
anvfhL0382Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL0619Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL0736Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
vfhvrvR275Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvrvR291Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvssR227Vicia sativa cv. Studenica genome v1.0Vicia sativa
avjvfhL599Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvfhL799Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvfhL328Cicer arietinum
vfhvumR275Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvumR315Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvvaR258Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vasvfhL236Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvfhL338Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vfhvstR248Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vfhvstR289Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvfvfhL022Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvfhL782Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vfhvunR266Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vfhvunR290Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.2g123240Vfaba.Hedin2.R1.2g123240_vfh_v1Vicia fabagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.2g123240.1_vfh_v1-exonVfaba.Hedin2.R1.2g123240.1_vfh_v1-exon-chr2_vfh_v1:720768465..720768815Vicia fabaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.2g123240.1_vfh_v1-cdsVfaba.Hedin2.R1.2g123240.1_vfh_v1-cds-chr2_vfh_v1:720768465..720768815Vicia fabaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.2g123240.1_vfh_v1Vfaba.Hedin2.R1.2g123240.1_vfh_v1Vicia fabapolypeptide
Vfaba.Hedin2.R1.2g123240.1_vfh_v1Vfaba.Hedin2.R1.2g123240.1_vfh_v1-proteinVicia fabapolypeptide


Homology
BLAST of Vfaba.Hedin2.R1.2g123240.1 vs. UniProtKB/TrEMBL
Match: tr|B7FH65|B7FH65_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=11416343 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.395e-46
Identity = 92/117 (78.63%), Postives = 101/117 (86.32%), Query Frame = 0
Query:    1 MSDPYERAKGGRLAFKGGTLATRQKSIDKKRKKKKNKIENSNPNTEEETLVDE-EKEVIVEGSELSEYTIDATKKMKYDQLFPVEAKKFGYEPKSKAKSIEEALDDRVKKKADRYCK 116
            MSDPY R K GRL+FKGGTLAT  K+IDKK+KKKKNK  N NPN E+ETL+DE EKE IV+G E SEYTIDA KKMKYDQLFPVEAKKFGYEPK+K  S+E+ALDDRVKKKADRYCK
Sbjct:    1 MSDPYARVKPGRLSFKGGTLATTSKTIDKKKKKKKNKNPNPNPNLEDETLIDEVEKEKIVDGEESSEYTIDAAKKMKYDQLFPVEAKKFGYEPKAKVTSVEDALDDRVKKKADRYCK 117          
BLAST of Vfaba.Hedin2.R1.2g123240.1 vs. UniProtKB/TrEMBL
Match: tr|A0A151TK40|A0A151TK40_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_023755 PE=4 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 9.732e-44
Identity = 84/125 (67.20%), Postives = 100/125 (80.00%), Query Frame = 0
Query:    1 MSDPYERAKGGRLAFKGGTLATRQKSIDKKRKKKKNKIENSNPNT------EEETLVDEEKEVIVEG---SELSEYTIDATKKMKYDQLFPVEAKKFGYEPKSKAKSIEEALDDRVKKKADRYCK 116
            M+DPYER KGGRLAFKGG LA+R KSIDKK KKKKNK +++NPN       +EE L+D + +  VEG    + SEYTIDA K+MKY+QLFPVEAKKFGY+PK+  KS+E+ALDDRVKKKADRYCK
Sbjct:    1 MADPYERVKGGRLAFKGGILASRSKSIDKKGKKKKNKNKDTNPNPNPNHEGQEEILLDMDNDKQVEGEGQGQGSEYTIDAAKRMKYEQLFPVEAKKFGYQPKTNFKSVEDALDDRVKKKADRYCK 125          
BLAST of Vfaba.Hedin2.R1.2g123240.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3JJZ8|A0A2K3JJZ8_TRIPR (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g047970 PE=4 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.274e-42
Identity = 85/119 (71.43%), Postives = 97/119 (81.51%), Query Frame = 0
Query:    1 MSDPYERAKGGRLAFKGGTLATRQKSIDKKRKKKKNKIENSNPNTEEETLV---DEEKEVIVEGSELSEYTIDATKKMKYDQLFPVEAKKFGYEPKSKAKSIEEALDDRVKKKADRYCK 116
            MSDPYE  K GRLAFKGGTLAT  K+IDKK+KKKK      NPN E+ETL    +E +++  EGSE +EYTIDA KKMKYDQLFPVEAKKFGYEPK+K K++E+ALDDRVKKKADRYCK
Sbjct:    1 MSDPYESVKAGRLAFKGGTLATTSKTIDKKKKKKKKS---KNPNLEDETLTLNEEELEKLGGEGSESTEYTIDAAKKMKYDQLFPVEAKKFGYEPKTKVKTVEDALDDRVKKKADRYCK 116          
BLAST of Vfaba.Hedin2.R1.2g123240.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6P6G7T7|A0A6P6G7T7_ZIZJJ (uncharacterized protein LOC107417848 OS=Ziziphus jujuba OX=326968 GN=LOC107417848 PE=4 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 4.071e-40
Identity = 81/127 (63.78%), Postives = 92/127 (72.44%), Query Frame = 0
Query:    1 MSDPYERAKGGRLAFKGGTLATRQKSIDKKRKKKKNKIE-NSNPNTEEETLVD----EEKEVIVEGSELS------EYTIDATKKMKYDQLFPVEAKKFGYEPKSKAKSIEEALDDRVKKKADRYCK 116
            MSDPY R KG RL FKGG LATR K+I+KK+KKKK   + N NPN +    VD    +    +V G + S      EYTIDA K+MKYD+LFPVEAKKFGYEPKSKAKS+E ALDDRVKKKADRYCK
Sbjct:    1 MSDPYGRVKGDRLTFKGGVLATRSKTIEKKKKKKKKNKQHNQNPNPDHHDAVDGVEVDPSASVVVGDDDSTAGAGVEYTIDAAKRMKYDELFPVEAKKFGYEPKSKAKSVESALDDRVKKKADRYCK 127          
BLAST of Vfaba.Hedin2.R1.2g123240.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3DW73|A0A1S3DW73_CICAR (uncharacterized protein LOC101512829 OS=Cicer arietinum OX=3827 GN=LOC101512829 PE=4 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 6.100e-40
Identity = 85/119 (71.43%), Postives = 97/119 (81.51%), Query Frame = 0
Query:    1 MSDPYERAKGGRLAFKGGTLATRQKSIDKKRKKKKNKIENSNPN--TEEETLVDEEKEVIVEGSELSE-YTIDATKKMKYDQLFPVEAKKFGYEPKSKAKSIEEALDDRVKKKADRYCK 116
            MSDPYER K GRLAFKGGTLATR K+IDKK+KKKK    ++N N   E+ETL D + E +V+ SE SE +TIDA K+MKYDQLFPVEAKKFGYEPK   KS+E+ALDDRVKKKADRYCK
Sbjct:    1 MSDPYERVKLGRLAFKGGTLATRSKTIDKKKKKKKINNNSNNQNPNIEDETL-DGQNEKLVDESEPSELFTIDAAKRMKYDQLFPVEAKKFGYEPKKDVKSVEDALDDRVKKKADRYCK 118          
BLAST of Vfaba.Hedin2.R1.2g123240.1 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6LA90|A0A4D6LA90_VIGUN (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG2g5838 PE=4 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.020e-39
Identity = 77/126 (61.11%), Postives = 90/126 (71.43%), Query Frame = 0
Query:    1 MSDPYERAKGGRLAFKGGTLATRQKSIDKKRKKK----------KNKIENSNPNTEEETLVDEEKEVIVEGSELSEYTIDATKKMKYDQLFPVEAKKFGYEPKSKAKSIEEALDDRVKKKADRYCK 116
            MSDPYER KGGRLAFKGG LA+R KSI+KK K K          +++    NPN   + LV+   +   EGSE   YTIDA K+MKYDQLFPVEAKKFGY+PK+   S+E+ALDDRVKKKADRYCK
Sbjct:    1 MSDPYERVKGGRLAFKGGILASRSKSIEKKGKNKKKKRTTASAAEDEDSGHNPNPNPDELVETPTDKKAEGSE---YTIDAAKRMKYDQLFPVEAKKFGYQPKTNFNSVEDALDDRVKKKADRYCK 123          
BLAST of Vfaba.Hedin2.R1.2g123240.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3QW88|A0A0S3QW88_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.01G000600 PE=4 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.714e-39
Identity = 77/126 (61.11%), Postives = 90/126 (71.43%), Query Frame = 0
Query:    1 MSDPYERAKGGRLAFKGGTLATRQKSIDKKRKKK----------KNKIENSNPNTEEETLVDEEKEVIVEGSELSEYTIDATKKMKYDQLFPVEAKKFGYEPKSKAKSIEEALDDRVKKKADRYCK 116
            MSDPYER KGGRLAFKGG LA+R KSI+KK K K          +++    NPN   +  VD +K+     +E SEYTIDA K+MKYDQLFPVEAKKFGY+PK    S+E+ALDDRVKKKADRYCK
Sbjct:    1 MSDPYERVKGGRLAFKGGILASRSKSIEKKGKNKKKKRTTAAAAEDEDSGPNPNPNPDEAVDTDKQ-----AEGSEYTIDAAKRMKYDQLFPVEAKKFGYQPKINFNSVEDALDDRVKKKADRYCK 121          
BLAST of Vfaba.Hedin2.R1.2g123240.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9UKY4|A0A0L9UKY4_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan05g095500 PE=4 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.714e-39
Identity = 77/126 (61.11%), Postives = 90/126 (71.43%), Query Frame = 0
Query:    1 MSDPYERAKGGRLAFKGGTLATRQKSIDKKRKKK----------KNKIENSNPNTEEETLVDEEKEVIVEGSELSEYTIDATKKMKYDQLFPVEAKKFGYEPKSKAKSIEEALDDRVKKKADRYCK 116
            MSDPYER KGGRLAFKGG LA+R KSI+KK K K          +++    NPN   +  VD +K+     +E SEYTIDA K+MKYDQLFPVEAKKFGY+PK    S+E+ALDDRVKKKADRYCK
Sbjct:    1 MSDPYERVKGGRLAFKGGILASRSKSIEKKGKNKKKKRTTAAAAEDEDSGPNPNPNPDEAVDTDKQ-----AEGSEYTIDAAKRMKYDQLFPVEAKKFGYQPKINFNSVEDALDDRVKKKADRYCK 121          
BLAST of Vfaba.Hedin2.R1.2g123240.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3UH70|A0A1S3UH70_VIGRR (uncharacterized protein LOC106765308 OS=Vigna radiata var. radiata OX=3916 GN=LOC106765308 PE=4 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.928e-39
Identity = 80/123 (65.04%), Postives = 91/123 (73.98%), Query Frame = 0
Query:    1 MSDPYERAKGGRLAFKGGTLATRQKSIDKKRKKKKNKI-------ENSNPNTEEETLVDEEKEVIVEGSELSEYTIDATKKMKYDQLFPVEAKKFGYEPKSKAKSIEEALDDRVKKKADRYCK 116
            MSDPYERAKGGRLAFKGG LA+R KSI+KK K KK +        ENS PN       DE  +   + +E SEYTIDA K+MKYDQLFPVEAKKFGY+PK+   S+E+ALDDRVKKKADRYCK
Sbjct:    1 MSDPYERAKGGRLAFKGGILASRSKSIEKKGKNKKKRTTAAAAEDENSGPNPNPNPNPDEAVDTDKQ-AEGSEYTIDAAKRMKYDQLFPVEAKKFGYQPKTNFNSVEDALDDRVKKKADRYCK 122          
BLAST of Vfaba.Hedin2.R1.2g123240.1 vs. UniProtKB/TrEMBL
Match: tr|A0A7J7CJ46|A0A7J7CJ46_TRIWF (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW16G00524 PE=4 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.381e-38
Identity = 76/116 (65.52%), Postives = 92/116 (79.31%), Query Frame = 0
Query:    1 MSDPYERAKGGRLAFKGGTLATRQKSIDKKRKKKKNKIENSNPNTEEETLVDEEKEVIVEGSELSEYTIDATKKMKYDQLFPVEAKKFGYEPKSKAKSIEEALDDRVKKKADRYCK 116
            MSDPYE+AKGGRL+FKGG LA+R K+IDKK+KKKK    N +   EE   + +++EV  +G     YTIDA K+ KYD LFPVEAKKFGY+PK+K+KS+EEALDDRVKKKADRYCK
Sbjct:    1 MSDPYEKAKGGRLSFKGGGLASRSKAIDKKKKKKKKA--NEDTVIEEGAELMQQQEVDGDGGTEEIYTIDAAKRRKYDDLFPVEAKKFGYDPKAKSKSVEEALDDRVKKKADRYCK 114          
BLAST of Vfaba.Hedin2.R1.2g123240.1 vs. Araport11
Match: AT2G25720.1 (| hypothetical protein | Chr2:10955664-10956017 REVERSE LENGTH=117 | 201606)

HSP 1 Score: 107.457 bits (267), Expect = 2.826e-31
Identity = 68/118 (57.63%), Postives = 79/118 (66.95%), Query Frame = 0
Query:    1 MSDPYERAKGGRLAFKGGTLATRQKSIDKKRKKKKNKIENSNPNTEE--ETLVDEEKEVIVEGSELSEYTIDATKKMKYDQLFPVEAKKFGYEPKSKAKSIEEALDDRVKKKADRYCK 116
            MSDPYER  GGRLAFKGG LATR+    KK+KK+K   E  +   E+  +T  D          +   Y+IDA KK KYD LFPVEAKKFGY PK+  +S E+ALDDRVKKKADRYCK
Sbjct:    1 MSDPYERVNGGRLAFKGGDLATRKSIEKKKKKKQKKNKEKLD-GVEDGAKTAPDGSPPPAAAAGDEDIYSIDAAKKKKYDDLFPVEAKKFGYIPKANFESREDALDDRVKKKADRYCK 117          
The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.2g123240.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|B7FH65|B7FH65_MEDTR1.395e-4678.63Uncharacterized protein OS=Medicago truncatula OX=... [more]
tr|A0A151TK40|A0A151TK40_CAJCA9.732e-4467.20Uncharacterized protein OS=Cajanus cajan OX=3821 G... [more]
tr|A0A2K3JJZ8|A0A2K3JJZ8_TRIPR2.274e-4271.43Uncharacterized protein OS=Trifolium pratense OX=5... [more]
tr|A0A6P6G7T7|A0A6P6G7T7_ZIZJJ4.071e-4063.78uncharacterized protein LOC107417848 OS=Ziziphus j... [more]
tr|A0A1S3DW73|A0A1S3DW73_CICAR6.100e-4071.43uncharacterized protein LOC101512829 OS=Cicer arie... [more]
tr|A0A4D6LA90|A0A4D6LA90_VIGUN1.020e-3961.11Uncharacterized protein OS=Vigna unguiculata OX=39... [more]
tr|A0A0S3QW88|A0A0S3QW88_PHAAN1.714e-3961.11Uncharacterized protein OS=Vigna angularis var. an... [more]
tr|A0A0L9UKY4|A0A0L9UKY4_PHAAN1.714e-3961.11Uncharacterized protein OS=Phaseolus angularis OX=... [more]
tr|A0A1S3UH70|A0A1S3UH70_VIGRR3.928e-3965.04uncharacterized protein LOC106765308 OS=Vigna radi... [more]
tr|A0A7J7CJ46|A0A7J7CJ46_TRIWF1.381e-3865.52Uncharacterized protein OS=Tripterygium wilfordii ... [more]
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BLAST of Vfaba.Hedin2.R1.2g123240.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Vfaba.Hedin2.R1.2g123240.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11)
Total hits: 1
Match NameE-valueIdentityDescription
AT2G25720.12.826e-3157.63| hypothetical protein | Chr2:10955664-10956017 RE... [more]
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InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..50
IPR013865Protein FAM32APANTHERPTHR13282UNCHARACTERIZEDcoord: 3..109

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vfaba.Hedin2.R1.2g123240.1_vfh_v1 ID=Vfaba.Hedin2.R1.2g123240.1_vfh_v1; Name=Vfaba.Hedin2.R1.2g123240.1; organism=Vicia faba; type=mRNA; length=351bp
ATGTCAGATCCATACGAACGTGCAAAAGGTGGTAGATTAGCCTTCAAAGG
AGGAACCCTAGCAACTAGACAAAAATCCATAGACAAAAAGCGAAAGAAAA
AGAAGAACAAAATCGAAAACTCTAACCCTAACACCGAAGAAGAAACCCTA
GTAGACGAAGAAAAAGAGGTAATCGTTGAAGGATCTGAGCTGTCGGAGTA
CACAATTGACGCGACGAAGAAAATGAAGTACGATCAGCTTTTTCCGGTGG
AAGCTAAGAAATTCGGGTATGAACCGAAAAGTAAGGCTAAATCGATTGAA
GAAGCGCTCGATGATCGTGTCAAGAAGAAAGCTGATCGTTACTGTAAATA
G
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protein sequence of Vfaba.Hedin2.R1.2g123240.1_vfh_v1

>Vfaba.Hedin2.R1.2g123240.1_vfh_v1 ID=Vfaba.Hedin2.R1.2g123240.1_vfh_v1; Name=Vfaba.Hedin2.R1.2g123240.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=116bp
MSDPYERAKGGRLAFKGGTLATRQKSIDKKRKKKKNKIENSNPNTEEETL
VDEEKEVIVEGSELSEYTIDATKKMKYDQLFPVEAKKFGYEPKSKAKSIE
EALDDRVKKKADRYCK
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mRNA from alignment at chr2:720768465..720768815+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vfaba.Hedin2.R1.2g123240.1_vfh_v1 ID=Vfaba.Hedin2.R1.2g123240.1_vfh_v1; Name=Vfaba.Hedin2.R1.2g123240.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr2:720768465..720768815+ (Vicia faba
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR013865FAM32A