Vfaba.Hedin2.R1.2g187840.1

Transcript Overview
NameVfaba.Hedin2.R1.2g187840.1
Unique NameVfaba.Hedin2.R1.2g187840.1_vfh_v1
TypemRNA
OrganismVicia faba (Faba bean)
Sequence length777
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr2chromosomechr2:1180869431..1180871570 +Vicia faba inbred line Hedin/2 genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vfhzwsR230Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vfhzwsR245Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
asvfhL032Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvfhL590Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvfhL788Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cavfhL284Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavfhL402Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavfhL616Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvfhL0434Cajanus cajan Asha genome v1.0Cajanus cajan
crvfhL052Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvfhL014Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
crvfhL330Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvfhL795Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
psvfhL287Pisum sativum Cameor genome v1aPisum sativum
psvfhL449Pisum sativum Cameor genome v1aPisum sativum
psvfhL470Pisum sativum Cameor genome v1aPisum sativum
psvfhL478Pisum sativum Cameor genome v1aPisum sativum
psvfhL549Pisum sativum Cameor genome v1aPisum sativum
vfhvfhR123Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvfhL144Vicia faba cv. Tiffany genome v1.0Vicia faba
tifvfhL211Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuR241Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vfhvuR269Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vfhvuR308Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvfhL0032Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL0036Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL0095Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
caivfhL341Cicer arietinum ICC 4958 genome v2Cicer arietinum
anvfhL0226Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL0329Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
caivfhL554Cicer arietinum ICC 4958 genome v2Cicer arietinum
anvfhL0379Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
caivfhL822Cicer arietinum ICC 4958 genome v2Cicer arietinum
anvfhL0742Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL0745Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL0967Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
vfhvrvR272Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvrvR297Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvuaR214Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vfhvssR229Vicia sativa cv. Studenica genome v1.0Vicia sativa
vfhvuaR260Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vfhvuaR268Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vfhvssR269Vicia sativa cv. Studenica genome v1.0Vicia sativa
vfhvssR311Vicia sativa cv. Studenica genome v1.0Vicia sativa
canvfhL236Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvfhL353Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvfhL553Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvfhL269Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvfhL596Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvfhL811Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvfhL237Cicer arietinum
carvfhL327Cicer arietinum
vfhvumR238Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvumR272Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvumR324Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvvaR230Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vfhvvaR261Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vfhvvaR263Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vfhvvaR291Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vasvfhL038Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvfhL233Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvfhL350Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vfhvstR229Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vfhvstR245Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vfhvstR297Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvfvfhL014Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvfhL778Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vfhvunR218Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vfhvunR247Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vfhvunR287Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Vigun09g204000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
rna-XM_014644583.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
evm.model.Chr09.1663Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
XM_058929845.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
XM_058929801.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Psat05G0095700-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vigun09g204000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Ca_15015.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Phvul.009G098000.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Va04G062570.2Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vigan.02G087200.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
PvulFLAVERTChr09.696Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Ca_01802Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
rna-XM_004501219.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vigst.02G067000.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Cr_03028.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
jg55471.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
rna-TanjilR_13974Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Psat5g027720.1Pisum sativum Cameor genome v1aPisum sativum
Vum_02G00714.1Vigna umbellata FF25 genome v1.0Vigna umbellata
LR48_mrnaVigan04g212700Vigna angularis Jingnong 6 genome v1.1Vigna angularis

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vfaba.Tiffany.R1.2g151600.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.2g187840Vfaba.Hedin2.R1.2g187840_vfh_v1Vicia fabagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.2g187840.1_vfh_v1-exonVfaba.Hedin2.R1.2g187840.1_vfh_v1-exon-chr2_vfh_v1:1180869431..1180869489Vicia fabaexon
Vfaba.Hedin2.R1.2g187840.1_vfh_v1-exonVfaba.Hedin2.R1.2g187840.1_vfh_v1-exon-chr2_vfh_v1:1180869592..1180869650Vicia fabaexon
Vfaba.Hedin2.R1.2g187840.1_vfh_v1-exonVfaba.Hedin2.R1.2g187840.1_vfh_v1-exon-chr2_vfh_v1:1180869741..1180869858Vicia fabaexon
Vfaba.Hedin2.R1.2g187840.1_vfh_v1-exonVfaba.Hedin2.R1.2g187840.1_vfh_v1-exon-chr2_vfh_v1:1180870100..1180870149Vicia fabaexon
Vfaba.Hedin2.R1.2g187840.1_vfh_v1-exonVfaba.Hedin2.R1.2g187840.1_vfh_v1-exon-chr2_vfh_v1:1180870404..1180870471Vicia fabaexon
Vfaba.Hedin2.R1.2g187840.1_vfh_v1-exonVfaba.Hedin2.R1.2g187840.1_vfh_v1-exon-chr2_vfh_v1:1180870563..1180870661Vicia fabaexon
Vfaba.Hedin2.R1.2g187840.1_vfh_v1-exonVfaba.Hedin2.R1.2g187840.1_vfh_v1-exon-chr2_vfh_v1:1180870822..1180870881Vicia fabaexon
Vfaba.Hedin2.R1.2g187840.1_vfh_v1-exonVfaba.Hedin2.R1.2g187840.1_vfh_v1-exon-chr2_vfh_v1:1180871035..1180871094Vicia fabaexon
Vfaba.Hedin2.R1.2g187840.1_vfh_v1-exonVfaba.Hedin2.R1.2g187840.1_vfh_v1-exon-chr2_vfh_v1:1180871194..1180871248Vicia fabaexon
Vfaba.Hedin2.R1.2g187840.1_vfh_v1-exonVfaba.Hedin2.R1.2g187840.1_vfh_v1-exon-chr2_vfh_v1:1180871331..1180871380Vicia fabaexon
Vfaba.Hedin2.R1.2g187840.1_vfh_v1-exonVfaba.Hedin2.R1.2g187840.1_vfh_v1-exon-chr2_vfh_v1:1180871472..1180871570Vicia fabaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.2g187840.1_vfh_v1-cdsVfaba.Hedin2.R1.2g187840.1_vfh_v1-cds-chr2_vfh_v1:1180869431..1180869489Vicia fabaCDS
Vfaba.Hedin2.R1.2g187840.1_vfh_v1-cdsVfaba.Hedin2.R1.2g187840.1_vfh_v1-cds-chr2_vfh_v1:1180869592..1180869650Vicia fabaCDS
Vfaba.Hedin2.R1.2g187840.1_vfh_v1-cdsVfaba.Hedin2.R1.2g187840.1_vfh_v1-cds-chr2_vfh_v1:1180869741..1180869858Vicia fabaCDS
Vfaba.Hedin2.R1.2g187840.1_vfh_v1-cdsVfaba.Hedin2.R1.2g187840.1_vfh_v1-cds-chr2_vfh_v1:1180870100..1180870149Vicia fabaCDS
Vfaba.Hedin2.R1.2g187840.1_vfh_v1-cdsVfaba.Hedin2.R1.2g187840.1_vfh_v1-cds-chr2_vfh_v1:1180870404..1180870471Vicia fabaCDS
Vfaba.Hedin2.R1.2g187840.1_vfh_v1-cdsVfaba.Hedin2.R1.2g187840.1_vfh_v1-cds-chr2_vfh_v1:1180870563..1180870661Vicia fabaCDS
Vfaba.Hedin2.R1.2g187840.1_vfh_v1-cdsVfaba.Hedin2.R1.2g187840.1_vfh_v1-cds-chr2_vfh_v1:1180870822..1180870881Vicia fabaCDS
Vfaba.Hedin2.R1.2g187840.1_vfh_v1-cdsVfaba.Hedin2.R1.2g187840.1_vfh_v1-cds-chr2_vfh_v1:1180871035..1180871094Vicia fabaCDS
Vfaba.Hedin2.R1.2g187840.1_vfh_v1-cdsVfaba.Hedin2.R1.2g187840.1_vfh_v1-cds-chr2_vfh_v1:1180871194..1180871248Vicia fabaCDS
Vfaba.Hedin2.R1.2g187840.1_vfh_v1-cdsVfaba.Hedin2.R1.2g187840.1_vfh_v1-cds-chr2_vfh_v1:1180871331..1180871380Vicia fabaCDS
Vfaba.Hedin2.R1.2g187840.1_vfh_v1-cdsVfaba.Hedin2.R1.2g187840.1_vfh_v1-cds-chr2_vfh_v1:1180871472..1180871570Vicia fabaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.2g187840.1_vfh_v1Vfaba.Hedin2.R1.2g187840.1_vfh_v1Vicia fabapolypeptide
Vfaba.Hedin2.R1.2g187840.1_vfh_v1Vfaba.Hedin2.R1.2g187840.1_vfh_v1-proteinVicia fabapolypeptide


Homology
BLAST of Vfaba.Hedin2.R1.2g187840.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2Y919|A0A1S2Y919_CICAR (psbP domain-containing protein 5, chloroplastic OS=Cicer arietinum OX=3827 GN=LOC101507302 PE=4 SV=1)

HSP 1 Score: 418.313 bits (1074), Expect = 1.293e-145
Identity = 225/287 (78.40%), Postives = 239/287 (83.28%), Query Frame = 0
Query:    1 MVLHSLCLSPC-----------------------------PSNNNLIFRRDLMLLGLTSLSLTCLPISATHAEEEQQDPKMASFVDEINAYSYLYPVELASKKIVFKWVESRKPERYSSAAPLSPNARLRIVSERVDIFDNLIISVTIGPPNASLINLKDKSKWTAKDVADSVLADKSSLRVTSTERSAESSVLDAHTDEIDGEPYWYYEYLIRKSPNTMSEESGIYRHYLASTAERDGYLYSISASTLSPQWKKMGPLFQQTVSSFRLVSPTENYVPPFKDPWRFW 258
            MV+ SLCLSP                               S+   IFRRDL+LLGLTSLSLTC P S T AEEE   PK+ASFVDEINAYSY+YPV+L SKK VFKWVESRKPERYSSAAPLSPNARLRIVSERVDIFDNLIISVTIGPPN+SL+  KDKSKWTAK+VADSVLA+KSSLRVTS+ERSAESSVLDAH+DEIDGEPYWYYEYLIRKSPNTMSEESGIYRHYL STAERDGYLYSISASTLSPQWK MGPLF++TVSSFRLVSPTENYVPPFKDPWRFW
Sbjct:    1 MVVQSLCLSPSNNLIFRNNNNNTTKVILNQTKSEHRRDFSSSSQTTIFRRDLVLLGLTSLSLTCPPFSVTLAEEE---PKVASFVDEINAYSYIYPVQLPSKKFVFKWVESRKPERYSSAAPLSPNARLRIVSERVDIFDNLIISVTIGPPNSSLLKEKDKSKWTAKNVADSVLAEKSSLRVTSSERSAESSVLDAHSDEIDGEPYWYYEYLIRKSPNTMSEESGIYRHYLGSTAERDGYLYSISASTLSPQWKSMGPLFEKTVSSFRLVSPTENYVPPFKDPWRFW 284          
BLAST of Vfaba.Hedin2.R1.2g187840.1 vs. UniProtKB/TrEMBL
Match: tr|G7JBQ7|G7JBQ7_MEDTR (PsbP domain protein OS=Medicago truncatula OX=3880 GN=11423366 PE=4 SV=1)

HSP 1 Score: 416.001 bits (1068), Expect = 1.525e-144
Identity = 218/297 (73.40%), Postives = 236/297 (79.46%), Query Frame = 0
Query:    1 MVLHSLCLSPCPSNN--------NLIFRRDLMLLGLTSLS-------------------------------LTCLPISATHAEEEQQDPKMASFVDEINAYSYLYPVELASKKIVFKWVESRKPERYSSAAPLSPNARLRIVSERVDIFDNLIISVTIGPPNASLINLKDKSKWTAKDVADSVLADKSSLRVTSTERSAESSVLDAHTDEIDGEPYWYYEYLIRKSPNTMSEESGIYRHYLASTAERDGYLYSISASTLSPQWKKMGPLFQQTVSSFRLVSPTENYVPPFKDPWRFW 258
            MVLHSL +  CPSNN        N IFRR  ++L  T  S                                TC PIS   A EE+QD KMASF+DE+NAYSYLYP+EL SKK VFKWVESRKPERYSSAAPLSPNARLRIVSERVD+FDNLIISVTIGPP+A+LINLKDKSKWTAKDV DSVLADKSSLRVTS +RSAESSVLDAH++EIDGEPYWYYEYLIRKSPN+MSEESGIYRHY+ASTAERDGYLYSISASTLSPQWKKMGPL ++TVSSFRLVSPTENYVPP+KDPWRFW
Sbjct:    1 MVLHSLWV--CPSNNPALILPTNNRIFRR--VILNQTKCSSLSDDDKRYYSSSSSRRDFLLLGGGLTSLSLTTCSPISVALAGEEEQDHKMASFLDEVNAYSYLYPLELPSKKFVFKWVESRKPERYSSAAPLSPNARLRIVSERVDLFDNLIISVTIGPPSANLINLKDKSKWTAKDVVDSVLADKSSLRVTSVQRSAESSVLDAHSNEIDGEPYWYYEYLIRKSPNSMSEESGIYRHYVASTAERDGYLYSISASTLSPQWKKMGPLLEKTVSSFRLVSPTENYVPPYKDPWRFW 293          
BLAST of Vfaba.Hedin2.R1.2g187840.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3NRS8|A0A2K3NRS8_TRIPR (PsbP domain-containing protein 5 chloroplastic-like OS=Trifolium pratense OX=57577 GN=L195_g002195 PE=4 SV=1)

HSP 1 Score: 413.69 bits (1062), Expect = 1.491e-143
Identity = 227/302 (75.17%), Postives = 239/302 (79.14%), Query Frame = 0
Query:    1 MVLHSLCLSPCPSNNNLIF--------------------------------------------RRDLMLLGLTSLSLTCLPISATHAEEEQQDPKMASFVDEINAYSYLYPVELASKKIVFKWVESRKPERYSSAAPLSPNARLRIVSERVDIFDNLIISVTIGPPNASLINLKDKSKWTAKDVADSVLADKSSLRVTSTERSAESSVLDAHTDEIDGEPYWYYEYLIRKSPNTMSEESGIYRHYLASTAERDGYLYSISASTLSPQWKKMGPLFQQTVSSFRLVSPTENYVPPFKDPWRFW 258
            MVL SLCL  CPSNN+ +                                             RRDL+LLGLTSLSLTCLP S T A EE+  PKMASF+DE NAYSYLYPVEL SK  VFKWVESRKPERYSSAAPLSPNARLRIVSERVDIFDNLIISVTIGPP+A LINLKDKSKWTAK VADSVLA+KSSLRVTS +RSAESSVLDAH+DEIDG PYWYYEYLIRKSPNTMSEESGIYRHYLASTAERDGYLYSISASTLSPQWKKMGP+F++TVSSFRLVSPTENYVPPFKDPWRFW
Sbjct:    1 MVLQSLCL--CPSNNSALILPNNNLIFRNNNNNSNNSTRLILNQNKSDQKRDFSTSCSSSIKPRRDLLLLGLTSLSLTCLPFSVTLAGEEE--PKMASFLDETNAYSYLYPVELPSKNFVFKWVESRKPERYSSAAPLSPNARLRIVSERVDIFDNLIISVTIGPPSAGLINLKDKSKWTAKSVADSVLAEKSSLRVTSAQRSAESSVLDAHSDEIDGVPYWYYEYLIRKSPNTMSEESGIYRHYLASTAERDGYLYSISASTLSPQWKKMGPIFEKTVSSFRLVSPTENYVPPFKDPWRFW 298          
BLAST of Vfaba.Hedin2.R1.2g187840.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6NE19|A0A2Z6NE19_TRISU (PsbP domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_306720 PE=4 SV=1)

HSP 1 Score: 405.216 bits (1040), Expect = 4.560e-140
Identity = 227/315 (72.06%), Postives = 239/315 (75.87%), Query Frame = 0
Query:    1 MVLHSLCLSPCPSNNNLIF----------------------------------------RRDLMLLGLTSLSLTCLPISATHAEEEQQDPKMASFVDEINAYSYLYPVELASKKIVFKWVESRKPERYSSAAPLSPNARLRIVSERVDIFDNLIISVTIGPPNASLINLKDKSKWTAKDVADSVLADKSSL-----------------RVTSTERSAESSVLDAHTDEIDGEPYWYYEYLIRKSPNTMSEESGIYRHYLASTAERDGYLYSISASTLSPQWKKMGPLFQQTVSSFRLVSPTENYVPPFKDPWRFW 258
            MVL SLCL  CPSNN+ +                                         RRDL+LLGLTSLSLTCLP S   A EE+  PKMASF+DE NAYSYLYPVEL SKK VFKWVESRKPERYSSAAPLSPNARLRIVSERVDIFDNLIISVTIGPP+A LINLKDKSKWTAK VADSVLA+KSSL                 RVTS +RSAESSVLDAH+DEIDG PYWYYEYLIRKSPNTMSEESGIYRHYLASTAERDGYLYSISASTLSPQWKKMGP+F++TVSSFRLVSPTENYVPPFKDPWRFW
Sbjct:    1 MVLQSLCL--CPSNNSALILPNNNLIFRNNNNSTRLILNQNKSDQKRDFSTSCSSSLKPRRDLLLLGLTSLSLTCLPFSVALAGEEE--PKMASFLDETNAYSYLYPVELPSKKFVFKWVESRKPERYSSAAPLSPNARLRIVSERVDIFDNLIISVTIGPPSAGLINLKDKSKWTAKSVADSVLAEKSSLVTRRSFLMDFGANAIPIRVTSAQRSAESSVLDAHSDEIDGVPYWYYEYLIRKSPNTMSEESGIYRHYLASTAERDGYLYSISASTLSPQWKKMGPIFEKTVSSFRLVSPTENYVPPFKDPWRFW 311          
BLAST of Vfaba.Hedin2.R1.2g187840.1 vs. UniProtKB/TrEMBL
Match: tr|A0A444XY76|A0A444XY76_ARAHY (PsbP domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_B08g089571 PE=4 SV=1)

HSP 1 Score: 394.815 bits (1013), Expect = 3.349e-136
Identity = 194/254 (76.38%), Postives = 219/254 (86.22%), Query Frame = 0
Query:    5 SLCLSPCPSNNNLIFRRDLMLLGLTSLSLTCLPISATHAEEEQQDPKMASFVDEINAYSYLYPVELASKKIVFKWVESRKPERYSSAAPLSPNARLRIVSERVDIFDNLIISVTIGPPNASLINLKDKSKWTAKDVADSVLADKSSLRVTSTERSAESSVLDAHTDEIDGEPYWYYEYLIRKSPNTMSEESGIYRHYLASTAERDGYLYSISASTLSPQWKKMGPLFQQTVSSFRLVSPTENYVPPFKDPWRFW 258
            S C     S NN  FRRD +L GLTSLSLT  P+SAT AEEE   PKMASF DE+NAYSYLYPVEL SKK VFKWVESRKPERYSSAAPLSP+ARLRIVSERVDI DNLIISVTIGPPN+S+I   DKSKWTA++VADSVL+DKS+LRVTS++R AESSVLD H+ EIDGEPYWYYEYL+RKSP  ++ +S ++RHYLASTAERDGY YSISASTLSPQW+KMGP  +++VSSFRL+ PTENYVPP+KDPWRFW
Sbjct:   43 SCCALKPTSQNNTFFRRDFVLFGLTSLSLTS-PLSATLAEEE---PKMASFEDELNAYSYLYPVELPSKKFVFKWVESRKPERYSSAAPLSPDARLRIVSERVDIIDNLIISVTIGPPNSSIIKTTDKSKWTAREVADSVLSDKSALRVTSSQRLAESSVLDTHSGEIDGEPYWYYEYLVRKSPIKVTPDSSVFRHYLASTAERDGYFYSISASTLSPQWEKMGPFLEKSVSSFRLLKPTENYVPPYKDPWRFW 292          
BLAST of Vfaba.Hedin2.R1.2g187840.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445C0E1|A0A445C0E1_ARAHY (PsbP domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_A08g040791 PE=4 SV=1)

HSP 1 Score: 392.504 bits (1007), Expect = 2.484e-135
Identity = 193/254 (75.98%), Postives = 218/254 (85.83%), Query Frame = 0
Query:    5 SLCLSPCPSNNNLIFRRDLMLLGLTSLSLTCLPISATHAEEEQQDPKMASFVDEINAYSYLYPVELASKKIVFKWVESRKPERYSSAAPLSPNARLRIVSERVDIFDNLIISVTIGPPNASLINLKDKSKWTAKDVADSVLADKSSLRVTSTERSAESSVLDAHTDEIDGEPYWYYEYLIRKSPNTMSEESGIYRHYLASTAERDGYLYSISASTLSPQWKKMGPLFQQTVSSFRLVSPTENYVPPFKDPWRFW 258
            S C     S NN  FRRD +L GLTSLSLT  P+S T AEEE   PKMASF DE+NAYSYLYPVEL SKK VFKWVESRKPERYSSAAPLSP+ARLRIVSERVDI DNLIISVTIGPPN+S+I   DKSKWTA++VADSVL+DKS+LRVTS++R AESSVLD H+ EIDGEPYWYYEYL+RKSP  ++ +S ++RHYLASTAERDGY YSISASTLSPQW+KMGP  +++VSSFRL+ PTENYVPP+KDPWRFW
Sbjct:   43 SCCALKPTSQNNTFFRRDFVLFGLTSLSLTS-PLSVTLAEEE---PKMASFEDELNAYSYLYPVELPSKKFVFKWVESRKPERYSSAAPLSPDARLRIVSERVDIIDNLIISVTIGPPNSSIIKTTDKSKWTAREVADSVLSDKSALRVTSSQRLAESSVLDTHSGEIDGEPYWYYEYLVRKSPIKVTPDSSVFRHYLASTAERDGYFYSISASTLSPQWEKMGPFLEKSVSSFRLLKPTENYVPPYKDPWRFW 292          
BLAST of Vfaba.Hedin2.R1.2g187840.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6P4B6W6|A0A6P4B6W6_ARADU (psbP domain-containing protein 5, chloroplastic OS=Arachis duranensis OX=130453 GN=LOC107463042 PE=4 SV=1)

HSP 1 Score: 389.037 bits (998), Expect = 6.240e-134
Identity = 191/254 (75.20%), Postives = 217/254 (85.43%), Query Frame = 0
Query:    5 SLCLSPCPSNNNLIFRRDLMLLGLTSLSLTCLPISATHAEEEQQDPKMASFVDEINAYSYLYPVELASKKIVFKWVESRKPERYSSAAPLSPNARLRIVSERVDIFDNLIISVTIGPPNASLINLKDKSKWTAKDVADSVLADKSSLRVTSTERSAESSVLDAHTDEIDGEPYWYYEYLIRKSPNTMSEESGIYRHYLASTAERDGYLYSISASTLSPQWKKMGPLFQQTVSSFRLVSPTENYVPPFKDPWRFW 258
            S C     S  +  FRRD +L GLTSLSLT  P+S T AEEE   PKMASF DE+NAYSYLYPVEL SKK VFKWVESRKPERYSSAAPLSP+ARLRIVSERVDI DNLIISVTIGPPN+S+I   DKSKWTA++VADSVL+DKS+LRVTS++R AESSVLD H+ EIDGEPYWYYEYL+RKSP  ++ +S ++RHYLASTAERDGY YSISASTLSPQW+KMGP  +++VSSFRL+ PTENYVPP+KDPWRFW
Sbjct:   45 SCCALKPTSQTDTFFRRDFVLFGLTSLSLTS-PLSVTLAEEE---PKMASFEDELNAYSYLYPVELPSKKFVFKWVESRKPERYSSAAPLSPDARLRIVSERVDIIDNLIISVTIGPPNSSIIKTTDKSKWTAREVADSVLSDKSALRVTSSQRLAESSVLDTHSGEIDGEPYWYYEYLVRKSPIKVTPDSSVFRHYLASTAERDGYFYSISASTLSPQWEKMGPFLEKSVSSFRLLKPTENYVPPYKDPWRFW 294          
BLAST of Vfaba.Hedin2.R1.2g187840.1 vs. UniProtKB/TrEMBL
Match: tr|I1JUI8|I1JUI8_SOYBN (PsbP domain-containing protein OS=Glycine max OX=3847 GN=100776365 PE=4 SV=1)

HSP 1 Score: 381.333 bits (978), Expect = 7.416e-131
Identity = 188/252 (74.60%), Postives = 217/252 (86.11%), Query Frame = 0
Query:    7 CLSPCPSNNNLIFRRDLMLLGLTSLSLTCLPISATHAEEEQQDPKMASFVDEINAYSYLYPVELASKKIVFKWVESRKPERYSSAAPLSPNARLRIVSERVDIFDNLIISVTIGPPNASLINLKDKSKWTAKDVADSVLADKSSLRVTSTERSAESSVLDAHTDEIDGEPYWYYEYLIRKSPNTMSEESGIYRHYLASTAERDGYLYSISASTLSPQWKKMGPLFQQTVSSFRLVSPTENYVPPFKDPWRFW 258
            C +  P++ N IFRRDLMLLGLTSLSL  +P+S T AEEE   PKMASF+DEINAYSY+YPVEL S    FKW+ESRKPERYSSAAPLSP+ARLRIVSERVD  DN+IISVTIGPPN+S I  KDKS+WTAKDVADSVLAD+SSLRVTS++R  ESSVL+ H+ EIDGE YWYYEYL+RK+P  +++ES  YRHYLASTAERDGYLYSISAST+SP+W+K+GP   + VSSFRL+SPTENYVPP+KDPWRFW
Sbjct:   51 CCALKPTSQNRIFRRDLMLLGLTSLSLP-MPLSVTLAEEE---PKMASFLDEINAYSYMYPVELPSDNFSFKWIESRKPERYSSAAPLSPDARLRIVSERVDFIDNVIISVTIGPPNSSYIKSKDKSEWTAKDVADSVLADRSSLRVTSSQRLEESSVLNTHSSEIDGEMYWYYEYLVRKAPLRLTDESSTYRHYLASTAERDGYLYSISASTVSPRWEKLGPFLDKAVSSFRLLSPTENYVPPYKDPWRFW 298          
BLAST of Vfaba.Hedin2.R1.2g187840.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0B2P4P4|A0A0B2P4P4_GLYSO (PsbP domain-containing protein 5, chloroplastic OS=Glycine soja OX=3848 GN=D0Y65_009030 PE=4 SV=1)

HSP 1 Score: 381.333 bits (978), Expect = 7.416e-131
Identity = 188/252 (74.60%), Postives = 217/252 (86.11%), Query Frame = 0
Query:    7 CLSPCPSNNNLIFRRDLMLLGLTSLSLTCLPISATHAEEEQQDPKMASFVDEINAYSYLYPVELASKKIVFKWVESRKPERYSSAAPLSPNARLRIVSERVDIFDNLIISVTIGPPNASLINLKDKSKWTAKDVADSVLADKSSLRVTSTERSAESSVLDAHTDEIDGEPYWYYEYLIRKSPNTMSEESGIYRHYLASTAERDGYLYSISASTLSPQWKKMGPLFQQTVSSFRLVSPTENYVPPFKDPWRFW 258
            C +  P++ N IFRRDLMLLGLTSLSL  +P+S T AEEE   PKMASF+DEINAYSY+YPVEL S    FKW+ESRKPERYSSAAPLSP+ARLRIVSERVD  DN+IISVTIGPPN+S I  KDKS+WTAKDVADSVLAD+SSLRVTS++R  ESSVL+ H+ EIDGE YWYYEYL+RK+P  +++ES  YRHYLASTAERDGYLYSISAST+SP+W+K+GP   + VSSFRL+SPTENYVPP+KDPWRFW
Sbjct:   51 CCALKPTSQNRIFRRDLMLLGLTSLSLP-MPLSVTLAEEE---PKMASFLDEINAYSYMYPVELPSDNFSFKWIESRKPERYSSAAPLSPDARLRIVSERVDFIDNVIISVTIGPPNSSYIKSKDKSEWTAKDVADSVLADRSSLRVTSSQRLEESSVLNTHSSEIDGEMYWYYEYLVRKAPLRLTDESSTYRHYLASTAERDGYLYSISASTVSPRWEKLGPFLDKAVSSFRLLSPTENYVPPYKDPWRFW 298          
BLAST of Vfaba.Hedin2.R1.2g187840.1 vs. UniProtKB/TrEMBL
Match: tr|I1K908|I1K908_SOYBN (PsbP domain-containing protein OS=Glycine max OX=3847 GN=100809891 PE=4 SV=1)

HSP 1 Score: 380.178 bits (975), Expect = 2.484e-130
Identity = 187/252 (74.21%), Postives = 216/252 (85.71%), Query Frame = 0
Query:    7 CLSPCPSNNNLIFRRDLMLLGLTSLSLTCLPISATHAEEEQQDPKMASFVDEINAYSYLYPVELASKKIVFKWVESRKPERYSSAAPLSPNARLRIVSERVDIFDNLIISVTIGPPNASLINLKDKSKWTAKDVADSVLADKSSLRVTSTERSAESSVLDAHTDEIDGEPYWYYEYLIRKSPNTMSEESGIYRHYLASTAERDGYLYSISASTLSPQWKKMGPLFQQTVSSFRLVSPTENYVPPFKDPWRFW 258
            C +  P++ N IFRRDLMLLGLTSLS T +P+S T AEEE   PKMASF+DEINAYSY+YPVEL S    FKW+ESRKPERYSSAAPLSP+ARLRIVSER+D  DN+IISVTIGPPN+S I  KDKSKWTAKDVADSVLAD+SSLRVTS++R  ESSVL+ H+ EIDGE YWYYEYL+RK+P  +++ES  YRHYLASTAERDGYLYSISAST+SP W+K+GP   + V+SFRL+SPTENYVPP+KDPWRFW
Sbjct:   48 CCALKPTSQNRIFRRDLMLLGLTSLSPT-MPLSVTLAEEE---PKMASFLDEINAYSYMYPVELPSDNFTFKWIESRKPERYSSAAPLSPDARLRIVSERLDFIDNVIISVTIGPPNSSYIKSKDKSKWTAKDVADSVLADRSSLRVTSSQRLEESSVLNTHSSEIDGEMYWYYEYLVRKAPLRLTDESSTYRHYLASTAERDGYLYSISASTVSPLWEKLGPFLDKAVNSFRLLSPTENYVPPYKDPWRFW 295          
BLAST of Vfaba.Hedin2.R1.2g187840.1 vs. UniProtKB/Swiss-Prot
Match: sp|P82715|PPD5_ARATH (PsbP domain-containing protein 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPD5 PE=1 SV=3)

HSP 1 Score: 338.191 bits (866), Expect = 2.164e-116
Identity = 165/264 (62.50%), Postives = 213/264 (80.68%), Query Frame = 0
Query:    1 MVLHSLCLSPCPSNNNLIFRRDLMLLGLTSLSLTCLPISA--THAEEE----QQDPKMASFVDEINAYSYLYPVELASKKIVFKWVESRKPERYSSAAPLSPNARLRIVSERVDIFDNLIISVTIGPPNASLINLKDKSKWTAKDVADSVLADKSSLRVTSTERSAESSVLDAHTDEIDGEPYWYYEYLIRKSPNTMSEESGIYRHYLASTAERDGYLYSISASTLSPQWKKMGPLFQQTVSSFRLVSPTENYVPPFKDPWRFW 258
            M+  S   +   S+   + RRDL+L+GL+S     LP+S+  THAEE+     ++ KM + VD+INAYSY YP++  S+K+VFKWVESRKPERYSSAAPLSP+ARLRIVSERVD+ DNL+IS++IGPPN+ L + K+K  W+AK+VADSVL+DKS+LRVTS++R  ESSVLDAH  +IDGEPYWYYEYL+RKSP  ++E S +YRHY++STAERDGYLY+I+ASTL  QW KMGP+ ++ V SFRL+ PT++YVPP+KDPWRFW
Sbjct:   35 MIARSGVSTRSISSEKGLSRRDLVLIGLSSPLSMFLPLSSPVTHAEEDVKMSGEELKMGTMVDDINAYSYAYPLDYPSEKLVFKWVESRKPERYSSAAPLSPDARLRIVSERVDLTDNLVISISIGPPNSRLTS-KEKKTWSAKEVADSVLSDKSALRVTSSQRLEESSVLDAHASDIDGEPYWYYEYLVRKSPTKIAEASKLYRHYISSTAERDGYLYTINASTLGKQWDKMGPVLERAVGSFRLLPPTDSYVPPYKDPWRFW 297          
BLAST of Vfaba.Hedin2.R1.2g187840.1 vs. Araport11
Match: AT5G11450.2 (| PsbP domain protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein) | Chr5:3654421-3656357 FORWARD LENGTH=315 | 201606)

HSP 1 Score: 339.347 bits (869), Expect = 1.382e-117
Identity = 165/264 (62.50%), Postives = 213/264 (80.68%), Query Frame = 0
Query:    1 MVLHSLCLSPCPSNNNLIFRRDLMLLGLTSLSLTCLPISA--THAEEE----QQDPKMASFVDEINAYSYLYPVELASKKIVFKWVESRKPERYSSAAPLSPNARLRIVSERVDIFDNLIISVTIGPPNASLINLKDKSKWTAKDVADSVLADKSSLRVTSTERSAESSVLDAHTDEIDGEPYWYYEYLIRKSPNTMSEESGIYRHYLASTAERDGYLYSISASTLSPQWKKMGPLFQQTVSSFRLVSPTENYVPPFKDPWRFW 258
            M+  S   +   S+   + RRDL+L+GL+S     LP+S+  THAEE+     ++ KM + VD+INAYSY YP++  S+K+VFKWVESRKPERYSSAAPLSP+ARLRIVSERVD+ DNL+IS++IGPPN+ L + K+K  W+AK+VADSVL+DKS+LRVTS++R  ESSVLDAH  +IDGEPYWYYEYL+RKSP  ++E S +YRHY++STAERDGYLY+I+ASTL  QW KMGP+ ++ V SFRL+ PT++YVPP+KDPWRFW
Sbjct:   53 MIARSGVSTRSISSEKGLSRRDLVLIGLSSPLSMFLPLSSPVTHAEEDVKMSGEELKMGTMVDDINAYSYAYPLDYPSEKLVFKWVESRKPERYSSAAPLSPDARLRIVSERVDLTDNLVISISIGPPNSRLTS-KEKKTWSAKEVADSVLSDKSALRVTSSQRLEESSVLDAHASDIDGEPYWYYEYLVRKSPTKIAEASKLYRHYISSTAERDGYLYTINASTLGKQWDKMGPVLERAVGSFRLLPPTDSYVPPYKDPWRFW 315          
BLAST of Vfaba.Hedin2.R1.2g187840.1 vs. Araport11
Match: AT5G11450.1 (| PsbP domain protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein) | Chr5:3654475-3656357 FORWARD LENGTH=297 | 201606)

HSP 1 Score: 338.191 bits (866), Expect = 2.213e-117
Identity = 165/264 (62.50%), Postives = 213/264 (80.68%), Query Frame = 0
Query:    1 MVLHSLCLSPCPSNNNLIFRRDLMLLGLTSLSLTCLPISA--THAEEE----QQDPKMASFVDEINAYSYLYPVELASKKIVFKWVESRKPERYSSAAPLSPNARLRIVSERVDIFDNLIISVTIGPPNASLINLKDKSKWTAKDVADSVLADKSSLRVTSTERSAESSVLDAHTDEIDGEPYWYYEYLIRKSPNTMSEESGIYRHYLASTAERDGYLYSISASTLSPQWKKMGPLFQQTVSSFRLVSPTENYVPPFKDPWRFW 258
            M+  S   +   S+   + RRDL+L+GL+S     LP+S+  THAEE+     ++ KM + VD+INAYSY YP++  S+K+VFKWVESRKPERYSSAAPLSP+ARLRIVSERVD+ DNL+IS++IGPPN+ L + K+K  W+AK+VADSVL+DKS+LRVTS++R  ESSVLDAH  +IDGEPYWYYEYL+RKSP  ++E S +YRHY++STAERDGYLY+I+ASTL  QW KMGP+ ++ V SFRL+ PT++YVPP+KDPWRFW
Sbjct:   35 MIARSGVSTRSISSEKGLSRRDLVLIGLSSPLSMFLPLSSPVTHAEEDVKMSGEELKMGTMVDDINAYSYAYPLDYPSEKLVFKWVESRKPERYSSAAPLSPDARLRIVSERVDLTDNLVISISIGPPNSRLTS-KEKKTWSAKEVADSVLSDKSALRVTSSQRLEESSVLDAHASDIDGEPYWYYEYLVRKSPTKIAEASKLYRHYISSTAERDGYLYTINASTLGKQWDKMGPVLERAVGSFRLLPPTDSYVPPYKDPWRFW 297          
The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.2g187840.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A1S2Y919|A0A1S2Y919_CICAR1.293e-14578.40psbP domain-containing protein 5, chloroplastic OS... [more]
tr|G7JBQ7|G7JBQ7_MEDTR1.525e-14473.40PsbP domain protein OS=Medicago truncatula OX=3880... [more]
tr|A0A2K3NRS8|A0A2K3NRS8_TRIPR1.491e-14375.17PsbP domain-containing protein 5 chloroplastic-lik... [more]
tr|A0A2Z6NE19|A0A2Z6NE19_TRISU4.560e-14072.06PsbP domain-containing protein OS=Trifolium subter... [more]
tr|A0A444XY76|A0A444XY76_ARAHY3.349e-13676.38PsbP domain-containing protein OS=Arachis hypogaea... [more]
tr|A0A445C0E1|A0A445C0E1_ARAHY2.484e-13575.98PsbP domain-containing protein OS=Arachis hypogaea... [more]
tr|A0A6P4B6W6|A0A6P4B6W6_ARADU6.240e-13475.20psbP domain-containing protein 5, chloroplastic OS... [more]
tr|I1JUI8|I1JUI8_SOYBN7.416e-13174.60PsbP domain-containing protein OS=Glycine max OX=3... [more]
tr|A0A0B2P4P4|A0A0B2P4P4_GLYSO7.416e-13174.60PsbP domain-containing protein 5, chloroplastic OS... [more]
tr|I1K908|I1K908_SOYBN2.484e-13074.21PsbP domain-containing protein OS=Glycine max OX=3... [more]
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BLAST of Vfaba.Hedin2.R1.2g187840.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
sp|P82715|PPD5_ARATH2.164e-11662.50PsbP domain-containing protein 5, chloroplastic OS... [more]
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BLAST of Vfaba.Hedin2.R1.2g187840.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11)
Total hits: 2
Match NameE-valueIdentityDescription
AT5G11450.21.382e-11762.50| PsbP domain protein (Mog1/PsbP/DUF1795-like phot... [more]
AT5G11450.12.213e-11762.50| PsbP domain protein (Mog1/PsbP/DUF1795-like phot... [more]
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InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.1000.10Mog1/PsbP, alpha/beta/alpha sandwichcoord: 40..240
e-value: 2.2E-25
score: 91.5
NoneNo IPR availablePANTHERPTHR31407coord: 15..240
IPR002683PsbP, C-terminalPFAMPF01789PsbPcoord: 52..239
e-value: 1.2E-14
score: 54.7
IPR016123Mog1/PsbP, alpha/beta/alpha sandwichSUPERFAMILY55724Mog1p/PsbP-likecoord: 53..240

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vfaba.Hedin2.R1.2g187840.1_vfh_v1 ID=Vfaba.Hedin2.R1.2g187840.1_vfh_v1; Name=Vfaba.Hedin2.R1.2g187840.1; organism=Vicia faba; type=mRNA; length=777bp
ATGGTTTTACACTCTCTATGTCTCTCTCCCTGTCCCTCCAACAACAACCT
TATCTTCAGAAGGGATTTGATGCTGTTAGGCCTCACTTCACTATCTCTAA
CATGCCTTCCAATTTCTGCTACTCATGCTGAAGAAGAACAACAAGACCCC
AAAATGGCTTCTTTTGTAGATGAAATCAATGCCTATTCTTATCTTTACCC
TGTTGAGCTTGCTTCTAAAAAAATTGTCTTCAAATGGGTAGAATCTCGAA
AGCCAGAACGATACTCATCAGCTGCACCACTTTCTCCTAATGCTCGGCTG
CGTATTGTGTCTGAACGTGTTGATATCTTTGACAATCTCATCATTTCGGT
CACGATAGGCCCTCCAAATGCAAGCCTTATAAACTTGAAGGATAAGAGCA
AATGGACTGCAAAAGATGTTGCTGATTCAGTTTTAGCTGACAAATCTTCA
CTGCGAGTTACCTCAACTGAGCGCTCTGCCGAGAGTTCAGTCCTCGACGC
ACATACTGATGAAATTGATGGTGAACCGTATTGGTACTATGAATACCTTA
TCCGTAAATCGCCTAATACAATGTCTGAAGAATCAGGAATTTACCGACAT
TATCTCGCTTCAACAGCAGAAAGAGATGGTTATCTGTACTCGATCAGCGC
TTCAACCCTCAGTCCACAGTGGAAAAAAATGGGGCCTTTATTTCAACAGA
CAGTGAGTTCGTTCCGCCTTGTCAGTCCAACAGAAAATTATGTTCCTCCT
TTCAAAGATCCCTGGAGATTTTGGTGA
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protein sequence of Vfaba.Hedin2.R1.2g187840.1_vfh_v1

>Vfaba.Hedin2.R1.2g187840.1_vfh_v1 ID=Vfaba.Hedin2.R1.2g187840.1_vfh_v1; Name=Vfaba.Hedin2.R1.2g187840.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=258bp
MVLHSLCLSPCPSNNNLIFRRDLMLLGLTSLSLTCLPISATHAEEEQQDP
KMASFVDEINAYSYLYPVELASKKIVFKWVESRKPERYSSAAPLSPNARL
RIVSERVDIFDNLIISVTIGPPNASLINLKDKSKWTAKDVADSVLADKSS
LRVTSTERSAESSVLDAHTDEIDGEPYWYYEYLIRKSPNTMSEESGIYRH
YLASTAERDGYLYSISASTLSPQWKKMGPLFQQTVSSFRLVSPTENYVPP
FKDPWRFW
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mRNA from alignment at chr2:1180869431..1180871570+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vfaba.Hedin2.R1.2g187840.1_vfh_v1 ID=Vfaba.Hedin2.R1.2g187840.1_vfh_v1; Name=Vfaba.Hedin2.R1.2g187840.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr2:1180869431..1180871570+ (Vicia faba
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR002683PsbP_C
IPR016123Mog1/PsbP_a/b/a-sand
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0009654photosystem II oxygen evolving complex
GO:0019898extrinsic component of membrane
GO:0009523photosystem II
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis