Vfaba.Hedin2.R1.2g208200.1

Transcript Overview
NameVfaba.Hedin2.R1.2g208200.1
Unique NameVfaba.Hedin2.R1.2g208200.1_vfh_v1
TypemRNA
OrganismVicia faba (Faba bean)
Sequence length393
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr2chromosomechr2:1325912974..1325913366 +Vicia faba inbred line Hedin/2 genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vfhzwsR232Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vfhzwsR251Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
asvfhL045Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvfhL200Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvfhL786Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cavfhL275Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavfhL403Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavfhL685Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvfhL1093Cajanus cajan Asha genome v1.0Cajanus cajan
pvvfhL022Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
crvfhL521Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvfhL265Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvfhL797Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
psvfhL160Pisum sativum Cameor genome v1aPisum sativum
psvfhL471Pisum sativum Cameor genome v1aPisum sativum
psvfhL506Pisum sativum Cameor genome v1aPisum sativum
psvfhL554Pisum sativum Cameor genome v1aPisum sativum
vfhvfhR140Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvfhL144Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuR240Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vfhvuR278Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vfhvuR289Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caivfhL338Cicer arietinum ICC 4958 genome v2Cicer arietinum
anvfhL0321Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
caivfhL561Cicer arietinum ICC 4958 genome v2Cicer arietinum
anvfhL0367Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL0470Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL0730Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL1044Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL1135Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
vfhvrvR220Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvrvR250Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvrvR298Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvssR209Vicia sativa cv. Studenica genome v1.0Vicia sativa
vfhvssR229Vicia sativa cv. Studenica genome v1.0Vicia sativa
vfhvuaR245Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vfhvuaR278Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vfhvssR301Vicia sativa cv. Studenica genome v1.0Vicia sativa
canvfhL225Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvfhL354Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvfhL623Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvfhL280Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvfhL576Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvfhL741Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvfhL795Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvfhL231Cicer arietinum
carvfhL327Cicer arietinum
carvfhL623Cicer arietinum
ccavfhL476Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavfhL605Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vfhvumR240Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvumR266Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvumR289Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvumR308Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvvaR206Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vfhvvaR216Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vfhvvaR218Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vfhvvaR288Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vasvfhL047Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvfhL139Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvfhL251Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvfhL334Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vfhvstR230Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vfhvstR234Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vfhvstR261Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vfhvstR280Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvfvfhL021Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvfhL256Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvfhL780Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vfhvunR260Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vfhvunR271Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
rna-KK1_019388Cajanus cajan Asha genome v1.0Cajanus cajan
Vigan.02G024600.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
rna-XM_014646877.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
rna-XM_004500861.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
LR48_mrnaVigan09g034800Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Cc_v2.0_15096.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vigun09g256600.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vum_02G00211.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Psat05G0039200-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Va04G070240.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vigun09g256600.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
XM_058929496.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
PvulFLAVERTChr09.237Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
jg55987.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vigst.02G020400.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vfaba.Tiffany.R1.2g168680.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.2g208200Vfaba.Hedin2.R1.2g208200_vfh_v1Vicia fabagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.2g208200.1_vfh_v1-exonVfaba.Hedin2.R1.2g208200.1_vfh_v1-exon-chr2_vfh_v1:1325912974..1325913366Vicia fabaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.2g208200.1_vfh_v1-cdsVfaba.Hedin2.R1.2g208200.1_vfh_v1-cds-chr2_vfh_v1:1325912974..1325913366Vicia fabaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.2g208200.1_vfh_v1Vfaba.Hedin2.R1.2g208200.1_vfh_v1Vicia fabapolypeptide
Vfaba.Hedin2.R1.2g208200.1_vfh_v1Vfaba.Hedin2.R1.2g208200.1_vfh_v1-proteinVicia fabapolypeptide


Homology
BLAST of Vfaba.Hedin2.R1.2g208200.1 vs. UniProtKB/TrEMBL
Match: tr|A0A3Q7YFF5|A0A3Q7YFF5_CICAR (RNA pseudouridine synthase 2, chloroplastic isoform X2 OS=Cicer arietinum OX=3827 GN=LOC101499072 PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.472e-55
Identity = 96/122 (78.69%), Postives = 103/122 (84.43%), Query Frame = 0
Query:    1 MLSLNTSCTCFGVSTATRAFQFQFRTSPS-LFSLSSNNNYKFRSVIARAVSGFSDESNPNGEPKSNYAGVRLEEIVDGGIESGKLRLDSWISSRINGISRARVQSSIKAGLVHVNGNVVDKV 121
            M+SLN SC C GVSTATRAFQ QFRTSPS LF  S     KF   +ARAVSG +D+SN NGEPKSNYAGVRLEEIVDG I+SGKLRLD+WISSRINGISRARVQSSIKAGLVHVNG +VDKV
Sbjct:    1 MISLNNSCGCCGVSTATRAFQSQFRTSPSSLFFFSPT---KFPRGVARAVSGLADDSNSNGEPKSNYAGVRLEEIVDGEIKSGKLRLDTWISSRINGISRARVQSSIKAGLVHVNGRLVDKV 119          
BLAST of Vfaba.Hedin2.R1.2g208200.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6MN79|A0A2Z6MN79_TRISU (S4 RNA-binding domain-containing protein (Fragment) OS=Trifolium subterraneum OX=3900 GN=TSUD_311850 PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.192e-54
Identity = 95/123 (77.24%), Postives = 104/123 (84.55%), Query Frame = 0
Query:    1 MLSLNT-SCTCFGVSTATRAFQFQFRTSPSLFSLSSNNNYKFRSVIARAVSGFSDESNPNGEPKSNYAGVRLEEIVDGG-IESGKLRLDSWISSRINGISRARVQSSIKAGLVHVNGNVVDKV 121
            MLSLNT SC C G+STATRAFQF FRTSPS +  S  NNYKFR  I RA S FSD+SN N +PKSNY+GV+LE+IVDGG  +SGKLRLDSWISSRINGISRARVQSSIKAGLVHVNG V+DKV
Sbjct:    1 MLSLNTTSCGCCGISTATRAFQFHFRTSPSQYFFSPTNNYKFRYNITRATSTFSDKSNSNEQPKSNYSGVQLEDIVDGGTTKSGKLRLDSWISSRINGISRARVQSSIKAGLVHVNGRVIDKV 123          
BLAST of Vfaba.Hedin2.R1.2g208200.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2Y9S2|A0A1S2Y9S2_CICAR (RNA pseudouridine synthase 2, chloroplastic isoform X1 OS=Cicer arietinum OX=3827 GN=LOC101499072 PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 7.197e-54
Identity = 96/122 (78.69%), Postives = 103/122 (84.43%), Query Frame = 0
Query:    1 MLSLNTSCTCFGVSTATRAFQFQFRTSPS-LFSLSSNNNYKFRSVIARAVSGFSDESNPNGEPKSNYAGVRLEEIVDGGIESGKLRLDSWISSRINGISRARVQSSIKAGLVHVNGNVVDKV 121
            M+SLN SC C GVSTATRAFQ QFRTSPS LF  S     KF   +ARAVSG +D+SN NGEPKSNYAGVRLEEIVDG I+SGKLRLD+WISSRINGISRARVQSSIKAGLVHVNG +VDKV
Sbjct:    1 MISLNNSCGCCGVSTATRAFQSQFRTSPSSLFFFSPT---KFPRGVARAVSGLADDSNSNGEPKSNYAGVRLEEIVDGEIKSGKLRLDTWISSRINGISRARVQSSIKAGLVHVNGRLVDKV 119          
BLAST of Vfaba.Hedin2.R1.2g208200.1 vs. UniProtKB/TrEMBL
Match: tr|A0A072V2K3|A0A072V2K3_MEDTR (RNA pseudouridine synthase, putative OS=Medicago truncatula OX=3880 GN=11427408 PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 5.098e-51
Identity = 94/123 (76.42%), Postives = 103/123 (83.74%), Query Frame = 0
Query:    1 MLSLNTSCTCFGVSTATRAFQFQFRTSPSLFSLSSNNNYKFRSVIARAVSGFSDESNPNGE-PKSNYAGVRLEEIV-DGGIESGKLRLDSWISSRINGISRARVQSSIKAGLVHVNGNVVDKV 121
            MLSLNTSC   GVST+T+AFQF FRTS S F  S  NN+K RS IA++ S FS++SN + E PKSNYAGV LEEIV DGGI+SGKLRLDSWISSRINGISRARVQSSIKAGLVHVNG VVDKV
Sbjct:    1 MLSLNTSCGFCGVSTSTKAFQFHFRTSSSPFFFSPLNNFKLRSSIAKSFSTFSNDSNSSTEEPKSNYAGVLLEEIVHDGGIKSGKLRLDSWISSRINGISRARVQSSIKAGLVHVNGRVVDKV 123          
BLAST of Vfaba.Hedin2.R1.2g208200.1 vs. UniProtKB/TrEMBL
Match: tr|G7J5V2|G7J5V2_MEDTR (Putative 23S rRNA pseudouridine(1911/1915/1917) synthase OS=Medicago truncatula OX=3880 GN=11427408 PE=3 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 1.417e-49
Identity = 94/123 (76.42%), Postives = 103/123 (83.74%), Query Frame = 0
Query:    1 MLSLNTSCTCFGVSTATRAFQFQFRTSPSLFSLSSNNNYKFRSVIARAVSGFSDESNPNGE-PKSNYAGVRLEEIV-DGGIESGKLRLDSWISSRINGISRARVQSSIKAGLVHVNGNVVDKV 121
            MLSLNTSC   GVST+T+AFQF FRTS S F  S  NN+K RS IA++ S FS++SN + E PKSNYAGV LEEIV DGGI+SGKLRLDSWISSRINGISRARVQSSIKAGLVHVNG VVDKV
Sbjct:    1 MLSLNTSCGFCGVSTSTKAFQFHFRTSSSPFFFSPLNNFKLRSSIAKSFSTFSNDSNSSTEEPKSNYAGVLLEEIVHDGGIKSGKLRLDSWISSRINGISRARVQSSIKAGLVHVNGRVVDKV 123          
BLAST of Vfaba.Hedin2.R1.2g208200.1 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6NXG0|A0A4D6NXG0_VIGUN (Ribosomal large subunit pseudouridine synthase D OS=Vigna unguiculata OX=3917 GN=DEO72_LG11g3736 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.645e-39
Identity = 83/120 (69.17%), Postives = 93/120 (77.50%), Query Frame = 0
Query:    1 MLSLNTSCTCFGVSTATRAFQFQFRTSPSLFSLSSNNNYKFRSVIARAVSGFSDESNPNGEPKSNYAGVRLEEIVDGGIESGKLRLDSWISSRINGISRARVQSSIKAGLVHVNGNVVDK 120
            MLS + SC C  VST+T AF FQFRTSPS   L S + YKFRS  A A SGFS +S+ +G+ K N++GVRLEE VD  I S KLRLDSWISSRINGISRARVQSSIK+GLVHVNG VVDK
Sbjct:    1 MLSFH-SCGCCRVSTST-AFHFQFRTSPSSLFLCSTS-YKFRSTTASAGSGFSGDSDSDGDRKLNFSGVRLEEAVDSTIGSTKLRLDSWISSRINGISRARVQSSIKSGLVHVNGRVVDK 117          
BLAST of Vfaba.Hedin2.R1.2g208200.1 vs. UniProtKB/TrEMBL
Match: tr|V7ARA7|V7ARA7_PHAVU (S4 RNA-binding domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_009G019500g PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 7.322e-39
Identity = 81/120 (67.50%), Postives = 93/120 (77.50%), Query Frame = 0
Query:    1 MLSLNTSCTCFGVSTATRAFQFQFRTSPSLFSLSSNNNYKFRSVIARAVSGFSDESNPNGEPKSNYAGVRLEEIVDGGIESGKLRLDSWISSRINGISRARVQSSIKAGLVHVNGNVVDK 120
            MLS + SC C  VST+T AF  QFRTSPS   L + + YKFRS IA A SGF+ +S+ +GE K N++G+RLEE VD  I S KLRLDSWISSRINGISRARVQSSIK+GLVHVNG VVDK
Sbjct:    1 MLSFH-SCGCCRVSTST-AFHSQFRTSPSSLFLYATS-YKFRSTIASACSGFTGDSDSDGERKLNFSGLRLEEAVDSRIGSAKLRLDSWISSRINGISRARVQSSIKSGLVHVNGRVVDK 117          
BLAST of Vfaba.Hedin2.R1.2g208200.1 vs. UniProtKB/TrEMBL
Match: tr|V7AU21|V7AU21_PHAVU (S4 RNA-binding domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_009G019500g PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 9.295e-39
Identity = 81/120 (67.50%), Postives = 93/120 (77.50%), Query Frame = 0
Query:    1 MLSLNTSCTCFGVSTATRAFQFQFRTSPSLFSLSSNNNYKFRSVIARAVSGFSDESNPNGEPKSNYAGVRLEEIVDGGIESGKLRLDSWISSRINGISRARVQSSIKAGLVHVNGNVVDK 120
            MLS + SC C  VST+T AF  QFRTSPS   L + + YKFRS IA A SGF+ +S+ +GE K N++G+RLEE VD  I S KLRLDSWISSRINGISRARVQSSIK+GLVHVNG VVDK
Sbjct:    1 MLSFH-SCGCCRVSTST-AFHSQFRTSPSSLFLYATS-YKFRSTIASACSGFTGDSDSDGERKLNFSGLRLEEAVDSRIGSAKLRLDSWISSRINGISRARVQSSIKSGLVHVNGRVVDK 117          
BLAST of Vfaba.Hedin2.R1.2g208200.1 vs. UniProtKB/TrEMBL
Match: tr|I3SSL5|I3SSL5_LOTJA (S4 RNA-binding domain-containing protein OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.895e-38
Identity = 82/123 (66.67%), Postives = 94/123 (76.42%), Query Frame = 0
Query:    1 MLSLNTSCTCFGVSTATRAFQFQFRTSPSLFSLSSNNNYKFRSVIARAVSGFSD--ESNPNGEPKSNYAGVRLEEIVDGGIESGKLRLDSWISSRINGISRARVQSSIKAGLVHVNGNVVDKV 121
            M+ L++S  C  VST  RAF+FQ   SPSL  L S  N K RS IARA SGF+D  +S   GEP++NYAGV+LEEIVD  I SGK RLDSWIS+RINGISRARVQSSIK+GLVHVNG VV+KV
Sbjct:    1 MILLHSSGYCR-VSTP-RAFKFQTPLSPSL--LFSATNSKSRSAIARASSGFADNSDSGDGGEPRANYAGVQLEEIVDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKV 119          
BLAST of Vfaba.Hedin2.R1.2g208200.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3RAC4|A0A0S3RAC4_PHAAN (S4 RNA-binding domain-containing protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.02G024600 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.664e-37
Identity = 79/120 (65.83%), Postives = 89/120 (74.17%), Query Frame = 0
Query:    1 MLSLNTSCTCFGVSTATRAFQFQFRTSPSLFSLSSNNNYKFRSVIARAVSGFSDESNPNGEPKSNYAGVRLEEIVDGGIESGKLRLDSWISSRINGISRARVQSSIKAGLVHVNGNVVDK 120
            MLS + SC C  VST+T AF FQFRT PS        +YKFRS  A A SGF+  S+ +G+ K N++GVRLEE VD  I S KLRLDSWISSRINGISRARVQSSIK+GLVHVNG VVDK
Sbjct:    1 MLSFH-SCGCCRVSTST-AFHFQFRTLPSSSLFFYATSYKFRSTTASAGSGFTGGSDSDGDRKLNFSGVRLEEAVDSAIGSAKLRLDSWISSRINGISRARVQSSIKSGLVHVNGRVVDK 118          
BLAST of Vfaba.Hedin2.R1.2g208200.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q3ECD0|PUS2_ARATH (RNA pseudouridine synthase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g76050 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.386e-20
Identity = 44/61 (72.13%), Postives = 51/61 (83.61%), Query Frame = 0
Query:   62 PKSNYAGVRLEEIVDGGIESGKLRLDSWISSRINGISRARVQSSIKAGLVHVNGNVVDKVN 122
            P+ N AG+R+EEIVD     GK+RLDSWISSRING+SRARVQSSI+ GLV VNG VVDKV+
Sbjct:   62 PRVNNAGLRIEEIVDAA--KGKIRLDSWISSRINGVSRARVQSSIRLGLVTVNGRVVDKVS 120          
BLAST of Vfaba.Hedin2.R1.2g208200.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q5Z8P2|PUS2_ORYSJ (RNA pseudouridine synthase 2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0717400 PE=2 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 3.563e-11
Identity = 32/64 (50.00%), Postives = 45/64 (70.31%), Query Frame = 0
Query:   63 KSNYAGVRLEEIVDGGIESGKLRLDSWISSRING--ISRARVQSSIKAGLVHVNGNVVDKVNSI 124
            +  + G RLEE V  G   G+ R+D+WIS+R+ G  +SRAR+Q+SI+AGLV VNG  V KV+ +
Sbjct:   53 RGGHGGTRLEEAVPAG--EGRSRIDAWISARLGGGGVSRARIQASIRAGLVVVNGRPVSKVSHM 114          
BLAST of Vfaba.Hedin2.R1.2g208200.1 vs. Araport11
Match: AT1G76050.1 (| Pseudouridine synthase family protein | Chr1:28540858-28542019 FORWARD LENGTH=313 | 201606)

HSP 1 Score: 88.1965 bits (217), Expect = 1.051e-21
Identity = 44/60 (73.33%), Postives = 50/60 (83.33%), Query Frame = 0
Query:   62 PKSNYAGVRLEEIVDGGIESGKLRLDSWISSRINGISRARVQSSIKAGLVHVNGNVVDKV 121
            P+ N AG+R+EEIVD     GK+RLDSWISSRING+SRARVQSSI+ GLV VNG VVDKV
Sbjct:   62 PRVNNAGLRIEEIVDAA--KGKIRLDSWISSRINGVSRARVQSSIRLGLVTVNGRVVDKV 119          
BLAST of Vfaba.Hedin2.R1.2g208200.1 vs. Araport11
Match: AT1G76050.2 (| Pseudouridine synthase family protein | Chr1:28540858-28542826 FORWARD LENGTH=430 | 201606)

HSP 1 Score: 87.8113 bits (216), Expect = 3.464e-21
Identity = 44/61 (72.13%), Postives = 51/61 (83.61%), Query Frame = 0
Query:   62 PKSNYAGVRLEEIVDGGIESGKLRLDSWISSRINGISRARVQSSIKAGLVHVNGNVVDKVN 122
            P+ N AG+R+EEIVD     GK+RLDSWISSRING+SRARVQSSI+ GLV VNG VVDKV+
Sbjct:   62 PRVNNAGLRIEEIVDAA--KGKIRLDSWISSRINGVSRARVQSSIRLGLVTVNGRVVDKVS 120          
The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.2g208200.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A3Q7YFF5|A0A3Q7YFF5_CICAR3.472e-5578.69RNA pseudouridine synthase 2, chloroplastic isofor... [more]
tr|A0A2Z6MN79|A0A2Z6MN79_TRISU1.192e-5477.24S4 RNA-binding domain-containing protein (Fragment... [more]
tr|A0A1S2Y9S2|A0A1S2Y9S2_CICAR7.197e-5478.69RNA pseudouridine synthase 2, chloroplastic isofor... [more]
tr|A0A072V2K3|A0A072V2K3_MEDTR5.098e-5176.42RNA pseudouridine synthase, putative OS=Medicago t... [more]
tr|G7J5V2|G7J5V2_MEDTR1.417e-4976.42Putative 23S rRNA pseudouridine(1911/1915/1917) sy... [more]
tr|A0A4D6NXG0|A0A4D6NXG0_VIGUN1.645e-3969.17Ribosomal large subunit pseudouridine synthase D O... [more]
tr|V7ARA7|V7ARA7_PHAVU7.322e-3967.50S4 RNA-binding domain-containing protein OS=Phaseo... [more]
tr|V7AU21|V7AU21_PHAVU9.295e-3967.50S4 RNA-binding domain-containing protein OS=Phaseo... [more]
tr|I3SSL5|I3SSL5_LOTJA2.895e-3866.67S4 RNA-binding domain-containing protein OS=Lotus ... [more]
tr|A0A0S3RAC4|A0A0S3RAC4_PHAAN1.664e-3765.83S4 RNA-binding domain-containing protein OS=Vigna ... [more]
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BLAST of Vfaba.Hedin2.R1.2g208200.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot)
Total hits: 2
Match NameE-valueIdentityDescription
sp|Q3ECD0|PUS2_ARATH3.386e-2072.13RNA pseudouridine synthase 2, chloroplastic OS=Ara... [more]
sp|Q5Z8P2|PUS2_ORYSJ3.563e-1150.00RNA pseudouridine synthase 2, chloroplastic OS=Ory... [more]
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BLAST of Vfaba.Hedin2.R1.2g208200.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11)
Total hits: 2
Match NameE-valueIdentityDescription
AT1G76050.11.051e-2173.33| Pseudouridine synthase family protein | Chr1:285... [more]
AT1G76050.23.464e-2172.13| Pseudouridine synthase family protein | Chr1:285... [more]
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InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036986RNA-binding S4 domain superfamilyGENE3D3.10.290.10coord: 68..126
e-value: 5.1E-11
score: 43.9
IPR002942RNA-binding S4 domainPFAMPF01479S4coord: 85..122
e-value: 3.4E-6
score: 26.7
NoneNo IPR availablePROSITEPS50889S4coord: 84..122
score: 9.910097
NoneNo IPR availableCDDcd00165S4coord: 85..124
e-value: 5.73948E-7
score: 42.2366
NoneNo IPR availableSUPERFAMILY55174Alpha-L RNA-binding motifcoord: 84..122

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vfaba.Hedin2.R1.2g208200.1_vfh_v1 ID=Vfaba.Hedin2.R1.2g208200.1_vfh_v1; Name=Vfaba.Hedin2.R1.2g208200.1; organism=Vicia faba; type=mRNA; length=393bp
ATGTTATCGCTAAACACCTCATGTACATGTTTTGGCGTTTCCACAGCAAC
AAGAGCATTCCAATTTCAGTTTCGAACTTCACCTTCACTATTTTCCCTCT
CTTCCAATAACAATTACAAATTTCGTTCTGTCATCGCGAGAGCCGTTTCT
GGTTTCTCCGATGAATCCAACCCTAACGGAGAACCAAAATCGAATTACGC
CGGCGTGCGGTTGGAAGAGATCGTCGACGGTGGAATCGAATCTGGAAAAC
TGAGACTCGACAGCTGGATCTCTTCTCGCATCAATGGAATCAGTAGGGCT
CGCGTTCAATCGAGTATTAAAGCTGGACTTGTTCATGTCAATGGTAATGT
TGTTGATAAGGTAAACTCAATATCCATTCAATCTGTTACATAA
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protein sequence of Vfaba.Hedin2.R1.2g208200.1_vfh_v1

>Vfaba.Hedin2.R1.2g208200.1_vfh_v1 ID=Vfaba.Hedin2.R1.2g208200.1_vfh_v1; Name=Vfaba.Hedin2.R1.2g208200.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=130bp
MLSLNTSCTCFGVSTATRAFQFQFRTSPSLFSLSSNNNYKFRSVIARAVS
GFSDESNPNGEPKSNYAGVRLEEIVDGGIESGKLRLDSWISSRINGISRA
RVQSSIKAGLVHVNGNVVDKVNSISIQSVT
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mRNA from alignment at chr2:1325912974..1325913366+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vfaba.Hedin2.R1.2g208200.1_vfh_v1 ID=Vfaba.Hedin2.R1.2g208200.1_vfh_v1; Name=Vfaba.Hedin2.R1.2g208200.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr2:1325912974..1325913366+ (Vicia faba
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR036986S4_RNA-bd_sf
IPR002942S4_RNA-bd
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding