Vfaba.Hedin2.R1.2g208200.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Vfaba.Hedin2.R1.2g208200.1 vs. UniProtKB/TrEMBL
Match: tr|A0A3Q7YFF5|A0A3Q7YFF5_CICAR (RNA pseudouridine synthase 2, chloroplastic isoform X2 OS=Cicer arietinum OX=3827 GN=LOC101499072 PE=3 SV=1) HSP 1 Score: 184.496 bits (467), Expect = 3.472e-55 Identity = 96/122 (78.69%), Postives = 103/122 (84.43%), Query Frame = 0 Query: 1 MLSLNTSCTCFGVSTATRAFQFQFRTSPS-LFSLSSNNNYKFRSVIARAVSGFSDESNPNGEPKSNYAGVRLEEIVDGGIESGKLRLDSWISSRINGISRARVQSSIKAGLVHVNGNVVDKV 121 M+SLN SC C GVSTATRAFQ QFRTSPS LF S KF +ARAVSG +D+SN NGEPKSNYAGVRLEEIVDG I+SGKLRLD+WISSRINGISRARVQSSIKAGLVHVNG +VDKV Sbjct: 1 MISLNNSCGCCGVSTATRAFQSQFRTSPSSLFFFSPT---KFPRGVARAVSGLADDSNSNGEPKSNYAGVRLEEIVDGEIKSGKLRLDTWISSRINGISRARVQSSIKAGLVHVNGRLVDKV 119
BLAST of Vfaba.Hedin2.R1.2g208200.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6MN79|A0A2Z6MN79_TRISU (S4 RNA-binding domain-containing protein (Fragment) OS=Trifolium subterraneum OX=3900 GN=TSUD_311850 PE=3 SV=1) HSP 1 Score: 186.422 bits (472), Expect = 1.192e-54 Identity = 95/123 (77.24%), Postives = 104/123 (84.55%), Query Frame = 0 Query: 1 MLSLNT-SCTCFGVSTATRAFQFQFRTSPSLFSLSSNNNYKFRSVIARAVSGFSDESNPNGEPKSNYAGVRLEEIVDGG-IESGKLRLDSWISSRINGISRARVQSSIKAGLVHVNGNVVDKV 121 MLSLNT SC C G+STATRAFQF FRTSPS + S NNYKFR I RA S FSD+SN N +PKSNY+GV+LE+IVDGG +SGKLRLDSWISSRINGISRARVQSSIKAGLVHVNG V+DKV Sbjct: 1 MLSLNTTSCGCCGISTATRAFQFHFRTSPSQYFFSPTNNYKFRYNITRATSTFSDKSNSNEQPKSNYSGVQLEDIVDGGTTKSGKLRLDSWISSRINGISRARVQSSIKAGLVHVNGRVIDKV 123
BLAST of Vfaba.Hedin2.R1.2g208200.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2Y9S2|A0A1S2Y9S2_CICAR (RNA pseudouridine synthase 2, chloroplastic isoform X1 OS=Cicer arietinum OX=3827 GN=LOC101499072 PE=3 SV=1) HSP 1 Score: 184.496 bits (467), Expect = 7.197e-54 Identity = 96/122 (78.69%), Postives = 103/122 (84.43%), Query Frame = 0 Query: 1 MLSLNTSCTCFGVSTATRAFQFQFRTSPS-LFSLSSNNNYKFRSVIARAVSGFSDESNPNGEPKSNYAGVRLEEIVDGGIESGKLRLDSWISSRINGISRARVQSSIKAGLVHVNGNVVDKV 121 M+SLN SC C GVSTATRAFQ QFRTSPS LF S KF +ARAVSG +D+SN NGEPKSNYAGVRLEEIVDG I+SGKLRLD+WISSRINGISRARVQSSIKAGLVHVNG +VDKV Sbjct: 1 MISLNNSCGCCGVSTATRAFQSQFRTSPSSLFFFSPT---KFPRGVARAVSGLADDSNSNGEPKSNYAGVRLEEIVDGEIKSGKLRLDTWISSRINGISRARVQSSIKAGLVHVNGRLVDKV 119
BLAST of Vfaba.Hedin2.R1.2g208200.1 vs. UniProtKB/TrEMBL
Match: tr|A0A072V2K3|A0A072V2K3_MEDTR (RNA pseudouridine synthase, putative OS=Medicago truncatula OX=3880 GN=11427408 PE=3 SV=1) HSP 1 Score: 174.096 bits (440), Expect = 5.098e-51 Identity = 94/123 (76.42%), Postives = 103/123 (83.74%), Query Frame = 0 Query: 1 MLSLNTSCTCFGVSTATRAFQFQFRTSPSLFSLSSNNNYKFRSVIARAVSGFSDESNPNGE-PKSNYAGVRLEEIV-DGGIESGKLRLDSWISSRINGISRARVQSSIKAGLVHVNGNVVDKV 121 MLSLNTSC GVST+T+AFQF FRTS S F S NN+K RS IA++ S FS++SN + E PKSNYAGV LEEIV DGGI+SGKLRLDSWISSRINGISRARVQSSIKAGLVHVNG VVDKV Sbjct: 1 MLSLNTSCGFCGVSTSTKAFQFHFRTSSSPFFFSPLNNFKLRSSIAKSFSTFSNDSNSSTEEPKSNYAGVLLEEIVHDGGIKSGKLRLDSWISSRINGISRARVQSSIKAGLVHVNGRVVDKV 123
BLAST of Vfaba.Hedin2.R1.2g208200.1 vs. UniProtKB/TrEMBL
Match: tr|G7J5V2|G7J5V2_MEDTR (Putative 23S rRNA pseudouridine(1911/1915/1917) synthase OS=Medicago truncatula OX=3880 GN=11427408 PE=3 SV=2) HSP 1 Score: 173.711 bits (439), Expect = 1.417e-49 Identity = 94/123 (76.42%), Postives = 103/123 (83.74%), Query Frame = 0 Query: 1 MLSLNTSCTCFGVSTATRAFQFQFRTSPSLFSLSSNNNYKFRSVIARAVSGFSDESNPNGE-PKSNYAGVRLEEIV-DGGIESGKLRLDSWISSRINGISRARVQSSIKAGLVHVNGNVVDKV 121 MLSLNTSC GVST+T+AFQF FRTS S F S NN+K RS IA++ S FS++SN + E PKSNYAGV LEEIV DGGI+SGKLRLDSWISSRINGISRARVQSSIKAGLVHVNG VVDKV Sbjct: 1 MLSLNTSCGFCGVSTSTKAFQFHFRTSSSPFFFSPLNNFKLRSSIAKSFSTFSNDSNSSTEEPKSNYAGVLLEEIVHDGGIKSGKLRLDSWISSRINGISRARVQSSIKAGLVHVNGRVVDKV 123
BLAST of Vfaba.Hedin2.R1.2g208200.1 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6NXG0|A0A4D6NXG0_VIGUN (Ribosomal large subunit pseudouridine synthase D OS=Vigna unguiculata OX=3917 GN=DEO72_LG11g3736 PE=3 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 1.645e-39 Identity = 83/120 (69.17%), Postives = 93/120 (77.50%), Query Frame = 0 Query: 1 MLSLNTSCTCFGVSTATRAFQFQFRTSPSLFSLSSNNNYKFRSVIARAVSGFSDESNPNGEPKSNYAGVRLEEIVDGGIESGKLRLDSWISSRINGISRARVQSSIKAGLVHVNGNVVDK 120 MLS + SC C VST+T AF FQFRTSPS L S + YKFRS A A SGFS +S+ +G+ K N++GVRLEE VD I S KLRLDSWISSRINGISRARVQSSIK+GLVHVNG VVDK Sbjct: 1 MLSFH-SCGCCRVSTST-AFHFQFRTSPSSLFLCSTS-YKFRSTTASAGSGFSGDSDSDGDRKLNFSGVRLEEAVDSTIGSTKLRLDSWISSRINGISRARVQSSIKSGLVHVNGRVVDK 117
BLAST of Vfaba.Hedin2.R1.2g208200.1 vs. UniProtKB/TrEMBL
Match: tr|V7ARA7|V7ARA7_PHAVU (S4 RNA-binding domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_009G019500g PE=3 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 7.322e-39 Identity = 81/120 (67.50%), Postives = 93/120 (77.50%), Query Frame = 0 Query: 1 MLSLNTSCTCFGVSTATRAFQFQFRTSPSLFSLSSNNNYKFRSVIARAVSGFSDESNPNGEPKSNYAGVRLEEIVDGGIESGKLRLDSWISSRINGISRARVQSSIKAGLVHVNGNVVDK 120 MLS + SC C VST+T AF QFRTSPS L + + YKFRS IA A SGF+ +S+ +GE K N++G+RLEE VD I S KLRLDSWISSRINGISRARVQSSIK+GLVHVNG VVDK Sbjct: 1 MLSFH-SCGCCRVSTST-AFHSQFRTSPSSLFLYATS-YKFRSTIASACSGFTGDSDSDGERKLNFSGLRLEEAVDSRIGSAKLRLDSWISSRINGISRARVQSSIKSGLVHVNGRVVDK 117
BLAST of Vfaba.Hedin2.R1.2g208200.1 vs. UniProtKB/TrEMBL
Match: tr|V7AU21|V7AU21_PHAVU (S4 RNA-binding domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_009G019500g PE=3 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 9.295e-39 Identity = 81/120 (67.50%), Postives = 93/120 (77.50%), Query Frame = 0 Query: 1 MLSLNTSCTCFGVSTATRAFQFQFRTSPSLFSLSSNNNYKFRSVIARAVSGFSDESNPNGEPKSNYAGVRLEEIVDGGIESGKLRLDSWISSRINGISRARVQSSIKAGLVHVNGNVVDK 120 MLS + SC C VST+T AF QFRTSPS L + + YKFRS IA A SGF+ +S+ +GE K N++G+RLEE VD I S KLRLDSWISSRINGISRARVQSSIK+GLVHVNG VVDK Sbjct: 1 MLSFH-SCGCCRVSTST-AFHSQFRTSPSSLFLYATS-YKFRSTIASACSGFTGDSDSDGERKLNFSGLRLEEAVDSRIGSAKLRLDSWISSRINGISRARVQSSIKSGLVHVNGRVVDK 117
BLAST of Vfaba.Hedin2.R1.2g208200.1 vs. UniProtKB/TrEMBL
Match: tr|I3SSL5|I3SSL5_LOTJA (S4 RNA-binding domain-containing protein OS=Lotus japonicus OX=34305 PE=2 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 2.895e-38 Identity = 82/123 (66.67%), Postives = 94/123 (76.42%), Query Frame = 0 Query: 1 MLSLNTSCTCFGVSTATRAFQFQFRTSPSLFSLSSNNNYKFRSVIARAVSGFSD--ESNPNGEPKSNYAGVRLEEIVDGGIESGKLRLDSWISSRINGISRARVQSSIKAGLVHVNGNVVDKV 121 M+ L++S C VST RAF+FQ SPSL L S N K RS IARA SGF+D +S GEP++NYAGV+LEEIVD I SGK RLDSWIS+RINGISRARVQSSIK+GLVHVNG VV+KV Sbjct: 1 MILLHSSGYCR-VSTP-RAFKFQTPLSPSL--LFSATNSKSRSAIARASSGFADNSDSGDGGEPRANYAGVQLEEIVDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKV 119
BLAST of Vfaba.Hedin2.R1.2g208200.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3RAC4|A0A0S3RAC4_PHAAN (S4 RNA-binding domain-containing protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.02G024600 PE=3 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 1.664e-37 Identity = 79/120 (65.83%), Postives = 89/120 (74.17%), Query Frame = 0 Query: 1 MLSLNTSCTCFGVSTATRAFQFQFRTSPSLFSLSSNNNYKFRSVIARAVSGFSDESNPNGEPKSNYAGVRLEEIVDGGIESGKLRLDSWISSRINGISRARVQSSIKAGLVHVNGNVVDK 120 MLS + SC C VST+T AF FQFRT PS +YKFRS A A SGF+ S+ +G+ K N++GVRLEE VD I S KLRLDSWISSRINGISRARVQSSIK+GLVHVNG VVDK Sbjct: 1 MLSFH-SCGCCRVSTST-AFHFQFRTLPSSSLFFYATSYKFRSTTASAGSGFTGGSDSDGDRKLNFSGVRLEEAVDSAIGSAKLRLDSWISSRINGISRARVQSSIKSGLVHVNGRVVDK 118
BLAST of Vfaba.Hedin2.R1.2g208200.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q3ECD0|PUS2_ARATH (RNA pseudouridine synthase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g76050 PE=2 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 3.386e-20 Identity = 44/61 (72.13%), Postives = 51/61 (83.61%), Query Frame = 0 Query: 62 PKSNYAGVRLEEIVDGGIESGKLRLDSWISSRINGISRARVQSSIKAGLVHVNGNVVDKVN 122 P+ N AG+R+EEIVD GK+RLDSWISSRING+SRARVQSSI+ GLV VNG VVDKV+ Sbjct: 62 PRVNNAGLRIEEIVDAA--KGKIRLDSWISSRINGVSRARVQSSIRLGLVTVNGRVVDKVS 120
BLAST of Vfaba.Hedin2.R1.2g208200.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q5Z8P2|PUS2_ORYSJ (RNA pseudouridine synthase 2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0717400 PE=2 SV=1) HSP 1 Score: 62.3882 bits (150), Expect = 3.563e-11 Identity = 32/64 (50.00%), Postives = 45/64 (70.31%), Query Frame = 0 Query: 63 KSNYAGVRLEEIVDGGIESGKLRLDSWISSRING--ISRARVQSSIKAGLVHVNGNVVDKVNSI 124 + + G RLEE V G G+ R+D+WIS+R+ G +SRAR+Q+SI+AGLV VNG V KV+ + Sbjct: 53 RGGHGGTRLEEAVPAG--EGRSRIDAWISARLGGGGVSRARIQASIRAGLVVVNGRPVSKVSHM 114
BLAST of Vfaba.Hedin2.R1.2g208200.1 vs. Araport11
Match: AT1G76050.1 (| Pseudouridine synthase family protein | Chr1:28540858-28542019 FORWARD LENGTH=313 | 201606) HSP 1 Score: 88.1965 bits (217), Expect = 1.051e-21 Identity = 44/60 (73.33%), Postives = 50/60 (83.33%), Query Frame = 0 Query: 62 PKSNYAGVRLEEIVDGGIESGKLRLDSWISSRINGISRARVQSSIKAGLVHVNGNVVDKV 121 P+ N AG+R+EEIVD GK+RLDSWISSRING+SRARVQSSI+ GLV VNG VVDKV Sbjct: 62 PRVNNAGLRIEEIVDAA--KGKIRLDSWISSRINGVSRARVQSSIRLGLVTVNGRVVDKV 119
BLAST of Vfaba.Hedin2.R1.2g208200.1 vs. Araport11
Match: AT1G76050.2 (| Pseudouridine synthase family protein | Chr1:28540858-28542826 FORWARD LENGTH=430 | 201606) HSP 1 Score: 87.8113 bits (216), Expect = 3.464e-21 Identity = 44/61 (72.13%), Postives = 51/61 (83.61%), Query Frame = 0 Query: 62 PKSNYAGVRLEEIVDGGIESGKLRLDSWISSRINGISRARVQSSIKAGLVHVNGNVVDKVN 122 P+ N AG+R+EEIVD GK+RLDSWISSRING+SRARVQSSI+ GLV VNG VVDKV+ Sbjct: 62 PRVNNAGLRIEEIVDAA--KGKIRLDSWISSRINGVSRARVQSSIRLGLVTVNGRVVDKVS 120 The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.2g208200.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL) Total hits: 10
BLAST of Vfaba.Hedin2.R1.2g208200.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot) Total hits: 2
BLAST of Vfaba.Hedin2.R1.2g208200.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11) Total hits: 2
InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vfaba.Hedin2.R1.2g208200.1_vfh_v1 ID=Vfaba.Hedin2.R1.2g208200.1_vfh_v1; Name=Vfaba.Hedin2.R1.2g208200.1; organism=Vicia faba; type=mRNA; length=393bpback to top protein sequence of Vfaba.Hedin2.R1.2g208200.1_vfh_v1 >Vfaba.Hedin2.R1.2g208200.1_vfh_v1 ID=Vfaba.Hedin2.R1.2g208200.1_vfh_v1; Name=Vfaba.Hedin2.R1.2g208200.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=130bpback to top mRNA from alignment at chr2:1325912974..1325913366+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>Vfaba.Hedin2.R1.2g208200.1_vfh_v1 ID=Vfaba.Hedin2.R1.2g208200.1_vfh_v1; Name=Vfaba.Hedin2.R1.2g208200.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr2:1325912974..1325913366+ (Vicia fababack to top |