Vfaba.Hedin2.R1.3g036080.1

Transcript Overview
NameVfaba.Hedin2.R1.3g036080.1
Unique NameVfaba.Hedin2.R1.3g036080.1_vfh_v1
TypemRNA
OrganismVicia faba (Faba bean)
Sequence length456
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr3chromosomechr3:195674350..195676048 -Vicia faba inbred line Hedin/2 genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vfhzwsR279Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vfhzwsR334Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
asvfhL132Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvfhL409Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvfhL506Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cavfhL209Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavfhL291Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavfhL520Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvfhL0449Cajanus cajan Asha genome v1.0Cajanus cajan
crvfhL259Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvfhL045Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvfhL161Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvfhL508Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvfhL603Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
psvfhL205Pisum sativum Cameor genome v1aPisum sativum
psvfhL621Pisum sativum Cameor genome v1aPisum sativum
vfhvfhR187Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvfhL222Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuR331Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vfhvuR336Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vfhvuR359Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vfhvuR392Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
tifvfhL349Vicia faba cv. Tiffany genome v1.0Vicia faba
tifvfhL410Vicia faba cv. Tiffany genome v1.0Vicia faba
caivfhL241Cicer arietinum ICC 4958 genome v2Cicer arietinum
anvfhL0574Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL0666Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL0892Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL0901Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL1144Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL1229Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
vfhvrvR344Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvrvR360Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvrvR426Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvuaR299Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vfhvuaR322Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vfhvssR349Vicia sativa cv. Studenica genome v1.0Vicia sativa
vfhvssR375Vicia sativa cv. Studenica genome v1.0Vicia sativa
vfhvuaR353Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vfhvssR403Vicia sativa cv. Studenica genome v1.0Vicia sativa
canvfhL178Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvfhL243Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvfhL469Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvfhL075Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvfhL387Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvfhL499Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvfhL687Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvfhL176Cicer arietinum
carvfhL265Cicer arietinum
carvfhL450Cicer arietinum
ccavfhL236Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavfhL341Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavfhL410Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vfhvumR393Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvumR506Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvumR523Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvvaR457Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vasvfhL432Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvfhL575Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvfhL655Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvfhL698Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vfhvstR443Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vfhvstR453Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vfhvstR460Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vfhvstR463Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvfvfhL047Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvfhL164Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvfhL476Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvfhL576Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vfhvunR309Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vfhvunR312Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vfhvunR333Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vfhvunR364Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Va02G003920.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vum_07G00642.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vigun11g120600.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
jg742.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
rna-XM_014663201.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vigan.06G155700.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Cc_v2.0_09621.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vigan.08G348700.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vigst.07G060800.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
rna-XM_014657005.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Ca_14458Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vum_08G02600.1Vigna umbellata FF25 genome v1.0Vigna umbellata
evm.model.Chr07.1722Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
rna-TanjilR_28603Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vigst.08G239600.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
jg7511.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
evm.model.Chr05.2201Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Va05G046540.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Phvul.011G100100.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
PvulFLAVERTChr05.1000882Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Vigun07g018200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vigun11g120600.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
PvulFLAVERTChr07.1001654Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
rna-XM_004497582.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Phvul.007G266700.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Va08G057170.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
PvulFLAVERTChr11.595Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Vigun05g230500.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-TanjilR_23686Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-KK1_003218Cajanus cajan Asha genome v1.0Cajanus cajan
LR48_mrnaVigan02g016900Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vigst.06G143500.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Vigan.07G081100.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Cc_v2.0_03126.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
LR48_mrnaVigan08g130400Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vigun07g018200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Ca_15208Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
rna-XM_004506185.2Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Psat06G0239000-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Phvul.005G117800.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vigun05g230500.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vfaba.Tiffany.R1.6g012440.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vfaba.Tiffany.R1.3g028200.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.3g036080Vfaba.Hedin2.R1.3g036080_vfh_v1Vicia fabagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.3g036080.1_vfh_v1-exonVfaba.Hedin2.R1.3g036080.1_vfh_v1-exon-chr3_vfh_v1:195674350..195674457Vicia fabaexon
Vfaba.Hedin2.R1.3g036080.1_vfh_v1-exonVfaba.Hedin2.R1.3g036080.1_vfh_v1-exon-chr3_vfh_v1:195674917..195675077Vicia fabaexon
Vfaba.Hedin2.R1.3g036080.1_vfh_v1-exonVfaba.Hedin2.R1.3g036080.1_vfh_v1-exon-chr3_vfh_v1:195675371..195675472Vicia fabaexon
Vfaba.Hedin2.R1.3g036080.1_vfh_v1-exonVfaba.Hedin2.R1.3g036080.1_vfh_v1-exon-chr3_vfh_v1:195675964..195676048Vicia fabaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.3g036080.1_vfh_v1-cdsVfaba.Hedin2.R1.3g036080.1_vfh_v1-cds-chr3_vfh_v1:195674350..195674457Vicia fabaCDS
Vfaba.Hedin2.R1.3g036080.1_vfh_v1-cdsVfaba.Hedin2.R1.3g036080.1_vfh_v1-cds-chr3_vfh_v1:195674917..195675077Vicia fabaCDS
Vfaba.Hedin2.R1.3g036080.1_vfh_v1-cdsVfaba.Hedin2.R1.3g036080.1_vfh_v1-cds-chr3_vfh_v1:195675371..195675472Vicia fabaCDS
Vfaba.Hedin2.R1.3g036080.1_vfh_v1-cdsVfaba.Hedin2.R1.3g036080.1_vfh_v1-cds-chr3_vfh_v1:195675964..195676048Vicia fabaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.3g036080.1_vfh_v1Vfaba.Hedin2.R1.3g036080.1_vfh_v1Vicia fabapolypeptide
Vfaba.Hedin2.R1.3g036080.1_vfh_v1Vfaba.Hedin2.R1.3g036080.1_vfh_v1-proteinVicia fabapolypeptide


Homology
BLAST of Vfaba.Hedin2.R1.3g036080.1 vs. UniProtKB/TrEMBL
Match: tr|I3SG86|I3SG86_LOTJA (ML domain-containing protein OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 6.502e-78
Identity = 113/145 (77.93%), Postives = 126/145 (86.90%), Query Frame = 0
Query:    9 LFLFSTLFLLHA--KATDVHYCDKKANYAVEVKGVQISPDPIARGHPATFTISAATSQELPRGKLVIDVSYFGWHVYSETDDLCGESSCPISVGDFVLSHSQVLPGIAPPGSYSLKMKLYDGNKNELTCFTFGFDIGFGSSVADM 151
            L  FSTL LLHA   ATDVHYCDKKA+Y VEVKGV+ISPDP+ARG PATF+I+AATSQ L  GKLVIDVSYFGWHVYSET DLCGE+ CP+S GDFV++HSQVLPG  PPGSY+L MK+YDGNK+ELTC  FGFDIGFGSSVAD+
Sbjct:    8 LLFFSTLCLLHAFATATDVHYCDKKADYDVEVKGVEISPDPVARGQPATFSIAAATSQALSGGKLVIDVSYFGWHVYSETHDLCGETPCPVSAGDFVIAHSQVLPGFTPPGSYALTMKMYDGNKHELTCVKFGFDIGFGSSVADI 152          
BLAST of Vfaba.Hedin2.R1.3g036080.1 vs. UniProtKB/TrEMBL
Match: tr|I3T0S6|I3T0S6_LOTJA (ML domain-containing protein OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 8.366e-77
Identity = 111/145 (76.55%), Postives = 126/145 (86.90%), Query Frame = 0
Query:    9 LFLFSTLFLLHA--KATDVHYCDKKANYAVEVKGVQISPDPIARGHPATFTISAATSQELPRGKLVIDVSYFGWHVYSETDDLCGESSCPISVGDFVLSHSQVLPGIAPPGSYSLKMKLYDGNKNELTCFTFGFDIGFGSSVADM 151
            L  FSTL LLHA   ATDVHYCDKKA+Y VEVKGV+ISPDP+ARG PATF+I+AATSQ L  GKLVID+SYFGWHVYSET DLCGE+ CP+S G+FV++HSQVLPG  PPGSY+L MK+YDGNK+ELTC  FGFDIGFGSSVAD+
Sbjct:    8 LLFFSTLCLLHAFATATDVHYCDKKADYDVEVKGVEISPDPVARGQPATFSIAAATSQALSGGKLVIDLSYFGWHVYSETHDLCGETPCPVSAGNFVIAHSQVLPGFTPPGSYALTMKMYDGNKHELTCVKFGFDIGFGSSVADI 152          
BLAST of Vfaba.Hedin2.R1.3g036080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2Y125|A0A1S2Y125_CICAR (putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 OS=Cicer arietinum OX=3827 GN=LOC101499372 PE=4 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 1.824e-76
Identity = 112/132 (84.85%), Postives = 118/132 (89.39%), Query Frame = 0
Query:   20 AKATDVHYCDKKANYAVEVKGVQISPDPIARGHPATFTISAATSQELPRGKLVIDVSYFGWHVYSETDDLCGESSCPISVGDFVLSHSQVLPGIAPPGSYSLKMKLYDG-NKNELTCFTFGFDIGFGSSVAD 150
            A ATD+HYCDKKANY V+VKGVQISPDPIARG PATFTI+A TSQ L  GKLVIDVSYFGWHVYSET DLCGE+SCPISVGDFV++HSQVLPG  PPGSYSLKMKLYDG N NELTC TFGF IGFGSSVAD
Sbjct:   22 ANATDIHYCDKKANYNVDVKGVQISPDPIARGQPATFTIAATTSQALSGGKLVIDVSYFGWHVYSETHDLCGETSCPISVGDFVIAHSQVLPGFTPPGSYSLKMKLYDGNNNNELTCITFGFSIGFGSSVAD 153          
BLAST of Vfaba.Hedin2.R1.3g036080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3SUS2|A0A0S3SUS2_PHAAN (ML domain-containing protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.08G348700 PE=4 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 3.117e-75
Identity = 110/153 (71.90%), Postives = 130/153 (84.97%), Query Frame = 0
Query:    1 MNTVGSKFLFLFSTLFLLHA--KATDVHYCDKKANYAVEVKGVQISPDPIARGHPATFTISAATSQELPRGKLVIDVSYFGWHVYSETDDLCGESSCPISVGDFVLSHSQVLPGIAPPGSYSLKMKLYDGNKNELTCFTFGFDIGFGSSVADM 151
            M T+ SKF F FSTL LL A   A D+ YCDKKA+Y VEV GV+ISPDPIARG PATF+I+A T + L  GKLVIDVSYFGWH++SET DLCGE++CP+S+GDFV++HSQVLPG  PPGSY+LKMK++DGNK+ELTC TFGFDIGFGSSVAD+
Sbjct:    1 MKTLSSKFFF-FSTLCLLCAFTNAADIRYCDKKADYDVEVSGVEISPDPIARGQPATFSIAATTGKALSGGKLVIDVSYFGWHIHSETHDLCGETTCPVSIGDFVIAHSQVLPGFTPPGSYTLKMKMFDGNKHELTCITFGFDIGFGSSVADI 152          
BLAST of Vfaba.Hedin2.R1.3g036080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9TV32|A0A0L9TV32_PHAAN (ML domain-containing protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan02g016900 PE=4 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 3.117e-75
Identity = 110/153 (71.90%), Postives = 130/153 (84.97%), Query Frame = 0
Query:    1 MNTVGSKFLFLFSTLFLLHA--KATDVHYCDKKANYAVEVKGVQISPDPIARGHPATFTISAATSQELPRGKLVIDVSYFGWHVYSETDDLCGESSCPISVGDFVLSHSQVLPGIAPPGSYSLKMKLYDGNKNELTCFTFGFDIGFGSSVADM 151
            M T+ SKF F FSTL LL A   A D+ YCDKKA+Y VEV GV+ISPDPIARG PATF+I+A T + L  GKLVIDVSYFGWH++SET DLCGE++CP+S+GDFV++HSQVLPG  PPGSY+LKMK++DGNK+ELTC TFGFDIGFGSSVAD+
Sbjct:    1 MKTLSSKFFF-FSTLCLLCAFTNAADIRYCDKKADYDVEVSGVEISPDPIARGQPATFSIAATTGKALSGGKLVIDVSYFGWHIHSETHDLCGETTCPVSIGDFVIAHSQVLPGFTPPGSYTLKMKMFDGNKHELTCITFGFDIGFGSSVADI 152          
BLAST of Vfaba.Hedin2.R1.3g036080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6MVC3|A0A4D6MVC3_VIGUN (Immunoglobulin E-set OS=Vigna unguiculata OX=3917 GN=DEO72_LG9g366 PE=4 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 3.674e-75
Identity = 110/153 (71.90%), Postives = 129/153 (84.31%), Query Frame = 0
Query:    1 MNTVGSKFLFLFSTLFLLHA--KATDVHYCDKKANYAVEVKGVQISPDPIARGHPATFTISAATSQELPRGKLVIDVSYFGWHVYSETDDLCGESSCPISVGDFVLSHSQVLPGIAPPGSYSLKMKLYDGNKNELTCFTFGFDIGFGSSVADM 151
            M  + SKF F FSTL LL A   A D+ YCDKKA+Y VEV GV+ISPDPIARG PATF+I+A T + L  GKLVIDVSYFGWH++SET DLCGE++CP+S+GDFV++HSQVLPG  PPGSY+LKMK++DGNK+ELTC TFGFDIGFGSSVADM
Sbjct:    1 MEILSSKFFF-FSTLCLLCAFTNAADIRYCDKKADYDVEVSGVEISPDPIARGQPATFSIAATTGKALSGGKLVIDVSYFGWHIHSETHDLCGETTCPVSIGDFVIAHSQVLPGFTPPGSYTLKMKMFDGNKHELTCITFGFDIGFGSSVADM 152          
BLAST of Vfaba.Hedin2.R1.3g036080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6MYL6|A0A2Z6MYL6_TRISU (ML domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_21620 PE=4 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 5.509e-74
Identity = 124/183 (67.76%), Postives = 133/183 (72.68%), Query Frame = 0
Query:    1 MNTVGSKFLFLFSTLFLLHAKATDVHYCDKKANYAVEVKGVQISPDPIARGHPATFTISAAT---------------------------------SQELPRGKLVIDVSYFGWHVYSETDDLCGESSCPISVGDFVLSHSQVLPGIAPPGSYSLKMKLYDGNKNELTCFTFGFDIGFGSSVAD 150
            M  + SK  FLFSTLFLLHA ATD+HYCD+KANY VEVKGVQI+PDPIARGHPATFTISA T                                  Q L  GKL+IDVSYFGWHVYSET DLCGESSCPISVGDFV++HSQVLPG  PPGSY+LKMKL+DGNKNELTC TFGFDIGFG SVAD
Sbjct:    1 MEKITSKLFFLFSTLFLLHANATDIHYCDRKANYDVEVKGVQITPDPIARGHPATFTISATTMVVAASAFHVEIAEVLMDNELAFFSLIQSFLDAGQALSGGKLLIDVSYFGWHVYSETHDLCGESSCPISVGDFVIAHSQVLPGFTPPGSYTLKMKLFDGNKNELTCITFGFDIGFGDSVAD 183          
BLAST of Vfaba.Hedin2.R1.3g036080.1 vs. UniProtKB/TrEMBL
Match: tr|C6SXR8|C6SXR8_SOYBN (ML domain-containing protein OS=Glycine max OX=3847 GN=100306050 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.511e-73
Identity = 105/140 (75.00%), Postives = 124/140 (88.57%), Query Frame = 0
Query:   13 STLFLLH--AKATDVHYCDKKANYAVEVKGVQISPDPIARGHPATFTISAATSQELPRGKLVIDVSYFGWHVYSETDDLCGESSCPISVGDFVLSHSQVLPGIAPPGSYSLKMKLYDGNKNELTCFTFGFDIGFGSSVAD 150
            STL LL+  + ATD+HYCDKKA+Y VEVKGV+ISPDPIARG PATF+I+A T + L  GKLVIDVSYFGWH++SET DLCGE++CP+S GDFV++HSQVLPG  PPGSY+LKMK++DGNK+ELTC TFGFDIGFGSSVAD
Sbjct:   14 STLCLLYGFSNATDIHYCDKKADYDVEVKGVEISPDPIARGQPATFSIAATTGKALSGGKLVIDVSYFGWHIHSETHDLCGETTCPVSAGDFVIAHSQVLPGFTPPGSYTLKMKMFDGNKHELTCITFGFDIGFGSSVAD 153          
BLAST of Vfaba.Hedin2.R1.3g036080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0B2P9P0|A0A0B2P9P0_GLYSO (Putative phosphatidylglycerol/phosphatidylinositol transfer protein OS=Glycine soja OX=3848 GN=D0Y65_026380 PE=4 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.511e-73
Identity = 105/140 (75.00%), Postives = 124/140 (88.57%), Query Frame = 0
Query:   13 STLFLLH--AKATDVHYCDKKANYAVEVKGVQISPDPIARGHPATFTISAATSQELPRGKLVIDVSYFGWHVYSETDDLCGESSCPISVGDFVLSHSQVLPGIAPPGSYSLKMKLYDGNKNELTCFTFGFDIGFGSSVAD 150
            STL LL+  + ATD+HYCDKKA+Y VEVKGV+ISPDPIARG PATF+I+A T + L  GKLVIDVSYFGWH++SET DLCGE++CP+S GDFV++HSQVLPG  PPGSY+LKMK++DGNK+ELTC TFGFDIGFGSSVAD
Sbjct:   14 STLCLLYGFSNATDIHYCDKKADYDVEVKGVEISPDPIARGQPATFSIAATTGKALSGGKLVIDVSYFGWHIHSETHDLCGETTCPVSAGDFVIAHSQVLPGFTPPGSYTLKMKMFDGNKHELTCITFGFDIGFGSSVAD 153          
BLAST of Vfaba.Hedin2.R1.3g036080.1 vs. UniProtKB/TrEMBL
Match: tr|I3SNQ8|I3SNQ8_MEDTR (ML domain-containing protein OS=Medicago truncatula OX=3880 PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 2.319e-73
Identity = 106/130 (81.54%), Postives = 114/130 (87.69%), Query Frame = 0
Query:   22 ATDVHYCDKKANYAVEVKGVQISPDPIARGHPATFTISAATSQELPRGKLVIDVSYFGWHVYSETDDLCGESSCPISVGDFVLSHSQVLPGIAPPGSYSLKMKLYDGNKNELTCFTFGFDIGFGSSVADM 151
            ATDVHYC KK +Y V+VKGVQISPDP+ARG PATFTISA TSQ L  GKLV+DVSYFGWHVYSET DLCGESSCPISVGDFV++HSQVLP   PPGSYSLKMKLYDGN NELTC  FGFD+GF SSVAD+
Sbjct:   27 ATDVHYCGKKDSYDVQVKGVQISPDPVARGQPATFTISANTSQALSEGKLVVDVSYFGWHVYSETHDLCGESSCPISVGDFVIAHSQVLPAYTPPGSYSLKMKLYDGNNNELTCIKFGFDVGFFSSVADI 156          
BLAST of Vfaba.Hedin2.R1.3g036080.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q54SW1|Y2179_DICDI (Putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0282179 PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 3.670e-15
Identity = 37/139 (26.62%), Postives = 68/139 (48.92%), Query Frame = 0
Query:    4 VGSKFLFLFSTLFLLHAKATDVHYCDKKANYAVEVKGVQISPDPIARGHPATFTISAATSQELPRGKLVIDVSYF---GW-HVYSETDDLCGESSCPISVGDFVLSHSQVLPGIAPPGSYSLKMKLYDGNKNELTCFTF 138
            + +  L L + + +L       +YCD   N   ++  + + PDP   G   T ++  + ++++  G  + +V++F   GW  + +  +D+C   SCP+S G F  S S  +P   P G Y  ++ L D +   +TC TF
Sbjct:    2 IKTILLLLINFMLILIVNGDIWNYCDGNINPTFKINKLTLLPDPPLVGKEVTISLEGSLNEQITSGSSIFNVAFFINGGWRQLPTFHNDICKVLSCPVSAGPFTYSTSIKVPIFTPHGQYKGQLTLTDQSNRNVTCLTF 140          
BLAST of Vfaba.Hedin2.R1.3g036080.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q54SZ9|Y2107_DICDI (Putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282107 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0282107 PE=3 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 4.661e-12
Identity = 41/142 (28.87%), Postives = 59/142 (41.55%), Query Frame = 0
Query:    8 FLFLFSTLFLLHAKAT----DVHYCDKKANYAVEVKGVQISPDPIARGHPATFTISAATSQELPRGKLVIDVSYFGWHVYSETDDLCGESS---CPISVGDFVLSHSQVLPGIAPPGSYSLKMKLYDGNKNELTCFTFGFDI 142
             LF+FS L LL A       D+     K+    ++K V ISPDP  RG   +   S      +  G + I + +    +  ET  +C   +   CPI  GD+  S    +P  AP G YS    L D   +E+ C      +
Sbjct:    6 LLFIFSILILLIAAEAKMFKDIWKSCGKSTDTFQIKNVTISPDPPVRGQTVSIYASGELKDTISGGDVNIQIKFGIITIIRETKPICSSDNPFPCPIQPGDYTHSVDIAIPDNAPRGKYSGNFVLTDQANDEIACINVNMQL 147          
BLAST of Vfaba.Hedin2.R1.3g036080.1 vs. UniProtKB/Swiss-Prot
Match: sp|O94183|NPC2_ASPOR (Phosphatidylglycerol/phosphatidylinositol transfer protein OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pltp PE=1 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.626e-10
Identity = 38/148 (25.68%), Postives = 67/148 (45.27%), Query Frame = 0
Query:    1 MNTVGSKFLFLFSTLFLLHAKATDV------HYCDKKANYAVEVKGVQISPDPIARGHPATFTISAATSQELPRGKLVI-DVSYFGWHVYSETDDLCG-----ESSCPISVGDFVLSHSQVLPGIAPPGSYSLKMKLYDGNKNELTCF 136
            ++T      F  S+   + A+A  V       YC+  +   +++K V +SP+P   G     T S    +++  G  V+ +V Y    +  +T DLC      E  CP+  GD  L+    LP   PPG Y+++  +++ +   +TC 
Sbjct:   17 VSTTARSLDFFKSSQSPIQAQAKSVPGNNPLEYCNDPSGDILDIKQVDLSPNPPLPGKTLAITASGTLREKIEDGAYVLLEVKYGLITLVRQTADLCEQLVNVELKCPLGPGDMTLTKQVDLPKQIPPGKYTVQADVFNSDGEHITCL 164          
BLAST of Vfaba.Hedin2.R1.3g036080.1 vs. Araport11
Match: AT3G11780.1 (| MD-2-related lipid recognition domain-containing protein / ML domain-containing protein | Chr3:3724326-3725476 REVERSE LENGTH=153 | 201606)

HSP 1 Score: 202.216 bits (513), Expect = 1.348e-67
Identity = 94/150 (62.67%), Postives = 114/150 (76.00%), Query Frame = 0
Query:    2 NTVGSKFLFLFSTLFLLHAKATDVHYCDKKANYAVEVKGVQISPDPIARGHPATFTISAATSQELPRGKLVIDVSYFGWHVYSETDDLCGESSCPISVGDFVLSHSQVLPGIAPPGSYSLKMKLYDGNKNELTCFTFGFDIGFGSSVADM 151
            +++   +  L ST+      ATDVHYCD    Y V+V+GV I+P PIARG PATF ISA T  E+  GKLVI+VSYFGWH++SET DLC E+SCP+++GDF+++HSQVLPG  PPGSYSLKMK+ DG K ELTC  F FDIGFGSSVADM
Sbjct:    8 SSLAISYFLLVSTI----VAATDVHYCDNNEEYEVKVQGVDITPYPIARGEPATFRISANTDTEISSGKLVIEVSYFGWHIHSETHDLCDETSCPVAIGDFLVAHSQVLPGYTPPGSYSLKMKMLDGRKKELTCIKFSFDIGFGSSVADM 153          
BLAST of Vfaba.Hedin2.R1.3g036080.1 vs. Araport11
Match: AT3G11780.2 (| MD-2-related lipid recognition domain-containing protein / ML domain-containing protein | Chr3:3724326-3725476 REVERSE LENGTH=171 | 201606)

HSP 1 Score: 192.2 bits (487), Expect = 2.745e-63
Identity = 94/168 (55.95%), Postives = 114/168 (67.86%), Query Frame = 0
Query:    2 NTVGSKFLFLFSTLFLLHAKATDVHYCDKKANYAVEVKGVQISPDPIARGHPATFTISAATSQELPRGKLVIDVSYFGWHVYSETDDLCGESSCPISVGDFVLSHSQVLPGIAPP------------------GSYSLKMKLYDGNKNELTCFTFGFDIGFGSSVADM 151
            +++   +  L ST+      ATDVHYCD    Y V+V+GV I+P PIARG PATF ISA T  E+  GKLVI+VSYFGWH++SET DLC E+SCP+++GDF+++HSQVLPG  PP                  GSYSLKMK+ DG K ELTC  F FDIGFGSSVADM
Sbjct:    8 SSLAISYFLLVSTI----VAATDVHYCDNNEEYEVKVQGVDITPYPIARGEPATFRISANTDTEISSGKLVIEVSYFGWHIHSETHDLCDETSCPVAIGDFLVAHSQVLPGYTPPTEKRFNLVSIAYYEFHVEGSYSLKMKMLDGRKKELTCIKFSFDIGFGSSVADM 171          
BLAST of Vfaba.Hedin2.R1.3g036080.1 vs. Araport11
Match: AT5G06480.1 (| Immunoglobulin E-set superfamily protein | Chr5:1976219-1977231 REVERSE LENGTH=153 | 201606)

HSP 1 Score: 188.348 bits (477), Expect = 4.676e-62
Identity = 87/130 (66.92%), Postives = 102/130 (78.46%), Query Frame = 0
Query:   22 ATDVHYCDKKANYAVEVKGVQISPDPIARGHPATFTISAATSQELPRGKLVIDVSYFGWHVYSETDDLCGESSCPISVGDFVLSHSQVLPGIAPPGSYSLKMKLYDGNKNELTCFTFGFDIGFGSSVADM 151
            A DVHYC++ A Y V+VK V ISP+PIA G PATFTISA T +E+  GKLVI+VSYFGWHV+SET DLC E+SCPI  GDF+++HSQVLPG  PPGSY LKMK+ D  K ELTC  F FDIG  +SVAD+
Sbjct:   24 AIDVHYCEENAEYEVKVKEVDISPNPIAPGEPATFTISANTGREISFGKLVIEVSYFGWHVHSETHDLCTETSCPIQTGDFLVAHSQVLPGYTPPGSYLLKMKMLDAKKKELTCIKFSFDIGLRASVADI 153          
BLAST of Vfaba.Hedin2.R1.3g036080.1 vs. Araport11
Match: AT3G44100.1 (| MD-2-related lipid recognition domain-containing protein | Chr3:15866162-15867273 REVERSE LENGTH=152 | 201606)

HSP 1 Score: 138.272 bits (347), Expect = 2.196e-42
Identity = 69/136 (50.74%), Postives = 90/136 (66.18%), Query Frame = 0
Query:   13 STLFLLHAKATDVHYCDKKANYAVEVKGVQISPDPIARGHPATFTISAATSQELPRGKLVIDVSYFGWHVYSETDDLCGESSCPISVGDFVLSHSQVLPGIAPPGSYSLKMKLYDGNKNELTCFTFGFDIGFGSSV 148
            S  FL    AT   YCDK+ +  V+V GV+ISPDP+  G  ATF I  +T +++  GK+VI V Y G  V++ET DLC E++CP++ G FVLSHSQ LP I PPG+Y+LKM + D N   LTC +F F I  GS+V
Sbjct:   15 SVFFLPALHATSFTYCDKRLD-PVKVTGVKISPDPVVSGAAATFKIFGSTGEDISGGKVVIRVLYVGIPVHTETHDLCDETACPVAPGSFVLSHSQTLPSITPPGTYTLKMTINDKNGGRLTCISFKFKITVGSAV 149          
The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.3g036080.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|I3SG86|I3SG86_LOTJA6.502e-7877.93ML domain-containing protein OS=Lotus japonicus OX... [more]
tr|I3T0S6|I3T0S6_LOTJA8.366e-7776.55ML domain-containing protein OS=Lotus japonicus OX... [more]
tr|A0A1S2Y125|A0A1S2Y125_CICAR1.824e-7684.85putative phosphatidylglycerol/phosphatidylinositol... [more]
tr|A0A0S3SUS2|A0A0S3SUS2_PHAAN3.117e-7571.90ML domain-containing protein OS=Vigna angularis va... [more]
tr|A0A0L9TV32|A0A0L9TV32_PHAAN3.117e-7571.90ML domain-containing protein OS=Phaseolus angulari... [more]
tr|A0A4D6MVC3|A0A4D6MVC3_VIGUN3.674e-7571.90Immunoglobulin E-set OS=Vigna unguiculata OX=3917 ... [more]
tr|A0A2Z6MYL6|A0A2Z6MYL6_TRISU5.509e-7467.76ML domain-containing protein OS=Trifolium subterra... [more]
tr|C6SXR8|C6SXR8_SOYBN1.511e-7375.00ML domain-containing protein OS=Glycine max OX=384... [more]
tr|A0A0B2P9P0|A0A0B2P9P0_GLYSO1.511e-7375.00Putative phosphatidylglycerol/phosphatidylinositol... [more]
tr|I3SNQ8|I3SNQ8_MEDTR2.319e-7381.54ML domain-containing protein OS=Medicago truncatul... [more]
back to top
BLAST of Vfaba.Hedin2.R1.3g036080.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot)
Total hits: 3
Match NameE-valueIdentityDescription
sp|Q54SW1|Y2179_DICDI3.670e-1526.62Putative phosphatidylglycerol/phosphatidylinositol... [more]
sp|Q54SZ9|Y2107_DICDI4.661e-1228.87Putative phosphatidylglycerol/phosphatidylinositol... [more]
sp|O94183|NPC2_ASPOR1.626e-1025.68Phosphatidylglycerol/phosphatidylinositol transfer... [more]
back to top
BLAST of Vfaba.Hedin2.R1.3g036080.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11)
Total hits: 4
Match NameE-valueIdentityDescription
AT3G11780.11.348e-6762.67| MD-2-related lipid recognition domain-containing... [more]
AT3G11780.22.745e-6355.95| MD-2-related lipid recognition domain-containing... [more]
AT5G06480.14.676e-6266.92| Immunoglobulin E-set superfamily protein | Chr5:... [more]
AT3G44100.12.196e-4250.74| MD-2-related lipid recognition domain-containing... [more]
back to top
InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.60.40.770coord: 23..143
e-value: 2.4E-13
score: 52.6
IPR003172MD-2-related lipid-recognition domainPFAMPF02221E1_DerP2_DerF2coord: 23..140
e-value: 3.9E-24
score: 85.5
IPR039670Sterol transport protein NPC2-likePANTHERPTHR11306NIEMANN PICK TYPE C2 PROTEIN NPC2-RELATEDcoord: 8..142
IPR033917ML domain, phosphatidylinositol/phosphatidylglycerol transfer proteinCDDcd00917PG-PI_TPcoord: 25..140
e-value: 1.81808E-35
score: 117.426
IPR014756Immunoglobulin E-setSUPERFAMILY81296E set domainscoord: 22..142

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vfaba.Hedin2.R1.3g036080.1_vfh_v1 ID=Vfaba.Hedin2.R1.3g036080.1_vfh_v1; Name=Vfaba.Hedin2.R1.3g036080.1; organism=Vicia faba; type=mRNA; length=456bp
ATGAACACCGTAGGTTCAAAATTCTTGTTTCTCTTTTCAACTCTCTTTCT
TCTTCACGCCAAGGCCACGGACGTTCACTATTGCGATAAGAAAGCAAACT
ATGCTGTTGAGGTTAAGGGAGTTCAAATATCTCCTGATCCCATTGCAAGA
GGCCATCCAGCTACATTCACCATTTCTGCAGCTACAAGTCAAGAGTTACC
ACGAGGGAAACTAGTGATAGATGTGTCGTATTTTGGATGGCATGTATATA
GCGAGACCGATGACCTTTGTGGAGAATCATCTTGCCCTATTTCGGTTGGT
GATTTTGTGCTTTCTCATTCACAAGTTTTACCTGGAATCGCCCCACCTGG
TTCATACTCGTTGAAGATGAAGCTATATGACGGAAACAAGAACGAGTTGA
CTTGCTTTACGTTTGGTTTTGATATTGGGTTTGGTTCTTCTGTGGCTGAT
ATGTAA
back to top

protein sequence of Vfaba.Hedin2.R1.3g036080.1_vfh_v1

>Vfaba.Hedin2.R1.3g036080.1_vfh_v1 ID=Vfaba.Hedin2.R1.3g036080.1_vfh_v1; Name=Vfaba.Hedin2.R1.3g036080.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=151bp
MNTVGSKFLFLFSTLFLLHAKATDVHYCDKKANYAVEVKGVQISPDPIAR
GHPATFTISAATSQELPRGKLVIDVSYFGWHVYSETDDLCGESSCPISVG
DFVLSHSQVLPGIAPPGSYSLKMKLYDGNKNELTCFTFGFDIGFGSSVAD
M
back to top

mRNA from alignment at chr3:195674350..195676048-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vfaba.Hedin2.R1.3g036080.1_vfh_v1 ID=Vfaba.Hedin2.R1.3g036080.1_vfh_v1; Name=Vfaba.Hedin2.R1.3g036080.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr3:195674350..195676048- (Vicia faba
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR003172ML_dom
IPR039670NPC2-like
IPR033917ML_PG-PI_TP
IPR014756Ig_E-set
Vocabulary: Molecular Function
TermDefinition
GO:0032934sterol binding
Vocabulary: Biological Process
TermDefinition
GO:0015918sterol transport
GO:0032366intracellular sterol transport