Vfaba.Hedin2.R1.3g041600.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Vfaba.Hedin2.R1.3g041600.1 vs. UniProtKB/TrEMBL
Match: tr|O65147|O65147_SOYBN (Gag-pol polyprotein OS=Glycine max OX=3847 GN=pol PE=4 SV=2) HSP 1 Score: 649.818 bits (1675), Expect = 0.000e+0 Identity = 328/597 (54.94%), Postives = 431/597 (72.19%), Query Frame = 0 Query: 1 MMEDETIHEFHMNILEIANTSGALGEKMSEEKLVRKILRSLPKRFAMKVTAIEEAQDISKLKVDELIGSLQTFEMGITDNGDKKNKSIALVSNTDVE---YKEDEEENISEAIAMLGRQFNRLIKRMDPKSRSNVHNIPSDIDSSSR-RPRSEDKGNQGRGIQCHGCEGYGHIRAECPTFLKKQKKGMTVTWSDYDSESNSEEESAKLVTALTSVCTSESDTSD--EEVTFEELADTYKKLCIRSAEVCVQNEKQSKLIIKLEAEKRANLETISHLEGEVQLLNSQLNQMTKSVKMLTNGTDKLEEILQVGQNVGNKSGLGF------------MEAKKSGTGKQMSKRMSQHNSQHQEQRHMKKRYQRWKCHHCGRYGHIKPFCFRLHGYPNQISGVKPKSKKVPHAPQWKKKTTALIAHTSLRVSAKEDWYFDSGCSRHMTGIKNLLNNVKPHTTSFVTFGDGAKGEIKGVGDLDCPGVPSLNEVLLVKGLTANLISISQLCDLGFKVNFSRSECLVINDKQEIVMKGVRSKENCYLWEAENTNSSSVYSIAKEEKEVKLWQHKLGLLHLRRMKRAISMETVRRTPKLQVLRGRI 579 M E+E IHEFHMNILEIAN ALGE+M++EKLVRKILRSLPKRF MKVTAIEEAQDI ++VDELIGSLQTFE+G++D +KK+K++A VSN + E Y D +E ++ A+ +LG+QFN+++ RMD + + +V NIP DI S + RS++K + +GIQCHGCEGYGHI+AECPT LKKQ+KG++V SD D+ES E +S + V ALT S D+SD E+TF+ELA +Y++LCI+S ++ Q + K+I LEAEK A+ + IS L+GE+ LNS+L MTKS+KML G+D L+E+LQ+G+NVGN+ GLGF K+ TG MS QH S+H + K + ++W+CH+CG+YGHIKPFC+ LHG+P+ + +K+ P K KT +L+ HTSLR SAKEDWY DSGCSRHMTG+K L N++P +TS+VTFGDG+KG+I G+G L G+PSLN+VLLVKGLTANLISISQLCD GF VNF++SECLV N+K E++MKG RSK+NCYLW + T+ SS +KE+ EVK+W + G LHLR MK+ I VR P L++ GRI Sbjct: 112 MKEEECIHEFHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGSLQTFELGLSDRTEKKSKNLAFVSNDEGEEDEYDLDTDEGLTNAVVLLGKQFNKVLNRMDRRQKPHVRNIPFDIRKGSEYQKRSDEKPSHSKGIQCHGCEGYGHIKAECPTHLKKQRKGLSVCRSD-DTESEQESDSDRDVNALTGRFESAEDSSDTDSEITFDELAISYRELCIKSEKILQQEAQLKKVIANLEAEKEAHEDEISELKGEIGFLNSKLENMTKSIKMLNKGSDLLDEVLQLGKNVGNQRGLGFNHKSAGRTTMTEFVPAKNSTGATMS----QHRSRHHGTQQKKSKRKKWRCHYCGKYGHIKPFCYHLHGHPHHGTQSSSSGRKMMWVP--KHKTVSLVVHTSLRASAKEDWYLDSGCSRHMTGVKEFLVNIEPCSTSYVTFGDGSKGKITGMGKLVHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNCYLWTPQETSYSSTCLFSKED-EVKIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRI 700
BLAST of Vfaba.Hedin2.R1.3g041600.1 vs. UniProtKB/TrEMBL
Match: tr|Q84VI0|Q84VI0_SOYBN (Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1) HSP 1 Score: 641.343 bits (1653), Expect = 0.000e+0 Identity = 327/595 (54.96%), Postives = 430/595 (72.27%), Query Frame = 0 Query: 1 MMEDETIHEFHMNILEIANTSGALGEKMSEEKLVRKILRSLPKRFAMKVTAIEEAQDISKLKVDELIGSLQTFEMGITDNGDKKNKSIALVSNTDVE---YKEDEEENISEAIAMLGRQFNRLIKRMDPKSRSNVHNIPSDIDSSSR-RPRSEDKGNQGRGIQCHGCEGYGHIRAECPTFLKKQKKGMTVTWSDYDSESNSEEESAKLVTALTSVCTSESDTSDEEVTFEELADTYKKLCIRSAEVCVQNEKQSKLIIKLEAEKRANLETISHLEGEVQLLNSQLNQMTKSVKMLTNGTDKLEEILQVGQNVGNKSGLGF------------MEAKKSGTGKQMSKRMSQHNSQHQEQRHMKKRYQRWKCHHCGRYGHIKPFCFRLHGYPNQISGVKPKSKKVPHAPQWKKKTTALIAHTSLRVSAKEDWYFDSGCSRHMTGIKNLLNNVKPHTTSFVTFGDGAKGEIKGVGDLDCPGVPSLNEVLLVKGLTANLISISQLCDLGFKVNFSRSECLVINDKQEIVMKGVRSKENCYLWEAENTNSSSVYSIAKEEKEVKLWQHKLGLLHLRRMKRAISMETVRRTPKLQVLRGRI 579 M E+E IH+FHMNILEIAN ALGE+M++EKLVRKILRSLPKRF MKVTAIEEAQDI ++VDELIGSLQTFE+G++D +KK+K++A VSN + E Y D +E ++ A+ +LG+QFN+++ RMD + + +V NIP DI S +S++K + +GIQCHGCEGYGHI+AECPT LKKQ+KG++V SD D+ES E +S + V ALT S+ D+SD E+TF+ELA +Y+KLCI+S ++ Q + K+I LEAEK A+ E IS L+GEV LNS+L MTKS+KML G+D L+E+LQ+G+NVGN+ GLGF K+ TG MS QH S+H + K + ++W+CH+CG+YGHIKPFC+ LHG+P+ + +K+ P K K +L+ HTSLR SAKEDWY DSGCSRHMTG+K L N++P +TS+VTFGDG+KG+I G+G L G+PSLN+VLLVKGLTANLISISQLCD GF VNF++SECLV N+K E++MKG RSK+NCYLW + T+ SS ++ +E EVK+W + G LHLR MK+ I VR P L++ GRI Sbjct: 140 MKEEECIHDFHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGSLQTFELGLSDRNEKKSKNLAFVSNDEGEEDEYDLDTDEGLTNAVGLLGKQFNKVLNRMDRRQKPHVRNIPFDIRKGSEYHKKSDEKPSHSKGIQCHGCEGYGHIKAECPTHLKKQRKGLSVCRSD-DTESEQESDSDRDVNALTGRFESDEDSSDIEITFDELAISYRKLCIKSEKILQQEAQLKKVIANLEAEKEAHEEEISELKGEVGFLNSKLENMTKSIKMLNKGSDMLDEVLQLGKNVGNQRGLGFNHKSACRITMTEFVPAKNSTGATMS----QHRSRHHGTQQKKSKRKKWRCHYCGKYGHIKPFCYHLHGHPHHGTQSSSSGRKMMWVP--KHKIVSLVVHTSLRASAKEDWYLDSGCSRHMTGVKEFLVNIEPCSTSYVTFGDGSKGKITGMGKLVHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNCYLWTPQETSYSST-CLSSKEDEVKIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRI 726
BLAST of Vfaba.Hedin2.R1.3g041600.1 vs. UniProtKB/TrEMBL
Match: tr|Q84VI2|Q84VI2_SOYBN (Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1) HSP 1 Score: 624.78 bits (1610), Expect = 0.000e+0 Identity = 319/594 (53.70%), Postives = 425/594 (71.55%), Query Frame = 0 Query: 1 MMEDETIHEFHMNILEIANTSGALGEKMSEEKLVRKILRSLPKRFAMKVTAIEEAQDISKLKVDELIGSLQTFEMGITDNGDKKNKSIALVSNTDVE---YKEDEEENISEAIAMLGRQFNRLIKRMDPKSRSNVHNIPSDIDSSSR-RPRSEDKGNQGRGIQCHGCEGYGHIRAECPTFLKKQKKGMTVTWSDYDSESNSEEESAKLVTALTSVCTSESDTSD--EEVTFEELADTYKKLCIRSAEVCVQNEKQSKLIIKLEAEKRANLETISHLEGEVQLLNSQLNQMTKSVKMLTNGTDKLEEILQVGQNVGNKSGLGFMEAKKSG---------TGKQMSKRMSQHNSQHQEQRHMKKRYQRWKCHHCGRYGHIKPFCFRLHGYPNQISGVKPKSKKVPHAPQWKKKTTALIAHTSLRVSAKEDWYFDSGCSRHMTGIKNLLNNVKPHTTSFVTFGDGAKGEIKGVGDLDCPGVPSLNEVLLVKGLTANLISISQLCDLGFKVNFSRSECLVINDKQEIVMKGVRSKENCYLWEAENTNSSSVYSIAKEEKEVKLWQHKLGLLHLRRMKRAISMETVRRTPKLQVLRGRI 579 M E+E IH+FHMNILEIAN ALGE++++EKLVRKILRSLPKRF MKVTAIEEAQDI ++VDELIGSLQTFE+G++D +KK+K++A VSN + E Y D +E ++ A+ +LG+QFN+++ RMD + + +V NIP DI S+ + RS+ K + +GIQCHGCEGYGHI AECPT LKK +KG++V SD +ES E +S + V AL + + D+SD E+TF+ELA +Y+KLCI+S ++ Q + K+I LEAEK A+ E IS L+GEV LNS+L MTKS+KML G+D L+E+L +G+N GN+ GLGF K +G + MSQH S+H + K + ++W+CH+CG+YGHIKPFC+ LHG+P+ + KK+ P K K +L+ HTSLR SAKEDWY DSGCSRHMTG+K L N++P +TS+VTFGDG+KG+I G+G L G+PSLN+VLLVKGLTANLISISQLCD GF VNF++SECLV N+K E++MKG RSK+NCYLW + T+ SS ++ +E EV++W + G LHLR MK+ + VR P L++ GRI Sbjct: 139 MKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGSLQTFELGLSDRAEKKSKNLAFVSNDEGEEDEYDLDTDEGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNIPFDIRKGSKYQKRSDVKPSHSKGIQCHGCEGYGHIIAECPTHLKKHRKGLSVCQSD--TESEQESDSDRDVNALIGIFETAEDSSDTDSEITFDELAASYRKLCIKSEKILQQEAQLKKVIADLEAEKEAHKEEISELKGEVGFLNSKLENMTKSIKMLNKGSDTLDEVLLLGKNAGNQRGLGF-NPKSAGRTTMTEFVPAKNRTGATMSQHRSRHHGMQQKKSKRKKWRCHYCGKYGHIKPFCYHLHGHPHHGTQSSNSRKKMMWVP--KHKAVSLVVHTSLRASAKEDWYLDSGCSRHMTGVKEFLLNIEPCSTSYVTFGDGSKGKIIGMGKLVHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNCYLWTPQETSYSST-CLSSKEDEVRIWHQRFGHLHLRGMKKILDKSAVRGIPNLKIEEGRI 726
BLAST of Vfaba.Hedin2.R1.3g041600.1 vs. UniProtKB/TrEMBL
Match: tr|Q84VH8|Q84VH8_SOYBN (Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1) HSP 1 Score: 622.854 bits (1605), Expect = 0.000e+0 Identity = 320/597 (53.60%), Postives = 427/597 (71.52%), Query Frame = 0 Query: 1 MMEDETIHEFHMNILEIANTSGALGEKMSEEKLVRKILRSLPKRFAMKVTAIEEAQDISKLKVDELIGSLQTFEMGITDNGDKKNKSIALVSNTDVE---YKEDEEENISEAIAMLGRQFNRLIKRMDPKSRSNVHNIPSDIDSSSR-RPRSEDKGNQGRGIQCHGCEGYGHIRAECPTFLKKQKKGMTVTWSDYDSESNSEEESAKLVTALTSVCTSESDTSD--EEVTFEELADTYKKLCIRSAEVCVQNEKQSKLIIKLEAEKRANLETISHLEGEVQLLNSQLNQMTKSVKMLTNGTDKLEEILQVGQNVGNKSGLGF------------MEAKKSGTGKQMSKRMSQHNSQHQEQRHMKKRYQRWKCHHCGRYGHIKPFCFRLHGYPNQISGVKPKSKKVPHAPQWKKKTTALIAHTSLRVSAKEDWYFDSGCSRHMTGIKNLLNNVKPHTTSFVTFGDGAKGEIKGVGDLDCPGVPSLNEVLLVKGLTANLISISQLCDLGFKVNFSRSECLVINDKQEIVMKGVRSKENCYLWEAENTNSSSVYSIAKEEKEVKLWQHKLGLLHLRRMKRAISMETVRRTPKLQVLRGRI 579 M E+E IH+FHMNILEIAN ALGE++++EKLVRKILRSLPKRF MKVTAIEEAQDI ++VDELIGSLQTFE+G++D +KK+K++A VSN + E Y D +E ++ A+ +LG+QFN+++ RMD + + +V NIP DI S+ + RS+ K + +GIQCHGCEGYGHI AECPT LKK +KG++V SD +ES E +S + V ALT + + D+SD E+TF+ELA +Y+KLCI+S ++ Q + K+I LEAEK A+ E IS L+GEV LNS+L M KS+KML G+D L+E+L +G+N GN+ GLGF K+ TG MS+ +S+H+ Q+ K + ++W+CH+CG+YGHIKPFC+ LHG+P+ + KK+ P K K +L+ HTSLR SAKEDWY DSGCSRHMTG+K L N++P +TS+VTFGDG+KG+I G+G L G+PSLN+VLLVKGLTANLISISQLCD GF VNF++SECLV N+K E++MKG RSK+NCYLW + T+ SS ++ +E EV++W + G LHLR MK+ I VR P L++ GRI Sbjct: 139 MKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGSLQTFELGLSDRAEKKSKNLAFVSNDEGEEDEYDLDTDEGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNIPFDIRKGSKYQKRSDVKPSHSKGIQCHGCEGYGHIIAECPTHLKKHRKGLSVCQSD--TESEQESDSDRDVNALTGIFETAEDSSDTDSEITFDELAASYRKLCIKSEKILQQEAQLKKVIADLEAEKEAHEEEISELKGEVGFLNSKLETMKKSIKMLNKGSDTLDEVLLLGKNAGNQRGLGFNPKFAGRTTMTEFVPAKNRTGTTMSQHLSRHHGTQQK----KSKRKKWRCHYCGKYGHIKPFCYHLHGHPHHGTQSSNSRKKMMWVP--KHKAVSLVVHTSLRASAKEDWYLDSGCSRHMTGVKEFLLNIEPCSTSYVTFGDGSKGKIIGMGKLVHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNCYLWTPQETSYSST-CLSSKEDEVRIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRI 726
BLAST of Vfaba.Hedin2.R1.3g041600.1 vs. UniProtKB/TrEMBL
Match: tr|Q84VH6|Q84VH6_SOYBN (Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1) HSP 1 Score: 617.461 bits (1591), Expect = 0.000e+0 Identity = 320/597 (53.60%), Postives = 422/597 (70.69%), Query Frame = 0 Query: 1 MMEDETIHEFHMNILEIANTSGALGEKMSEEKLVRKILRSLPKRFAMKVTAIEEAQDISKLKVDELIGSLQTFEMGITDNGDKKNKSIALVSNTDVE---YKEDEEENISEAIAMLGRQFNRLIKRMDPKSRSNVHNIPSDIDSSSRRPR-SEDKGNQGRGIQCHGCEGYGHIRAECPTFLKKQKKGMTVTWSDYDSESNSEEESAKLVTALTSVCTSESDTSD--EEVTFEELADTYKKLCIRSAEVCVQNEKQSKLIIKLEAEKRANLETISHLEGEVQLLNSQLNQMTKSVKMLTNGTDKLEEILQVGQNVGNKSGLGF------------MEAKKSGTGKQMSKRMSQHNSQHQEQRHMKKRYQRWKCHHCGRYGHIKPFCFRLHGYPNQISGVKPKSKKVPHAPQWKKKTTALIAHTSLRVSAKEDWYFDSGCSRHMTGIKNLLNNVKPHTTSFVTFGDGAKGEIKGVGDLDCPGVPSLNEVLLVKGLTANLISISQLCDLGFKVNFSRSECLVINDKQEIVMKGVRSKENCYLWEAENTNSSSVYSIAKEEKEVKLWQHKLGLLHLRRMKRAISMETVRRTPKLQVLRGRI 579 M E+E IH+FHM ILEIAN ALGE+M++EKLVRKILRSLPKRF MKVTAIEEAQDI ++VDELIGSLQTFE+G++D +KK+K++A VSN + E Y D +E ++ A+ LG+QFN+++ RMD + + +V NI DI S R S++K + +GIQC GCEGYGHI+AECPT LKKQ+KG++V SD D+ES E +S + V ALT S D+SD E+TF+ELA Y++LCI+S ++ Q + K+I LEAEK A+ E IS L+GEV LNS+L MTKS+KML G+D L+++LQ+G+ VGN+ GLGF K+ TG MS QH S+H + + + ++W+CH+CG+YGHIKPFC+ LHG+P+ + +K+ P K K +L+ HTSLR SAKEDWY DSGCSRHMTG+K L N++P +TS+VTFGDG+KG+I G+G L G+PSLN+VLLVKGLT NLISISQLCD GF VNF++SECLV N+K E++MKG RSK+NCYLW + ++ SS +KE+ EVK+W + G LHLR MK+ I VR P L++ GRI Sbjct: 139 MKEEECIHDFHMTILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGSLQTFELGLSDRTEKKSKNLAFVSNDEGEEDEYDLDTDEGLTNAVVFLGKQFNKVLNRMDRRQKPHVRNISLDIRKGSEYQRKSDEKPSHSKGIQCRGCEGYGHIKAECPTHLKKQRKGLSVCRSD-DTESEQESDSDRDVNALTGRFESAEDSSDTDSEITFDELAIFYRELCIKSEKILQQEAQLKKVIANLEAEKEAHEEEISKLKGEVGFLNSKLENMTKSIKMLNKGSDMLDZVLQLGKKVGNQRGLGFNHKSAGRTTMTEFVPAKNSTGATMS----QHRSRHHGTQQKRSKRKKWRCHYCGKYGHIKPFCYHLHGHPHHGTQGSSSGRKMMWVP--KHKIVSLVVHTSLRASAKEDWYLDSGCSRHMTGVKEFLVNIEPCSTSYVTFGDGSKGKITGMGKLVHEGLPSLNKVLLVKGLTVNLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNCYLWTPQESSHSSTCLFSKED-EVKIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRI 727
BLAST of Vfaba.Hedin2.R1.3g041600.1 vs. UniProtKB/TrEMBL
Match: tr|Q84VI4|Q84VI4_SOYBN (Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1) HSP 1 Score: 616.305 bits (1588), Expect = 0.000e+0 Identity = 318/594 (53.54%), Postives = 422/594 (71.04%), Query Frame = 0 Query: 1 MMEDETIHEFHMNILEIANTSGALGEKMSEEKLVRKILRSLPKRFAMKVTAIEEAQDISKLKVDELIGSLQTFEMGITDNGDKKNKSIALVSNTDVE---YKEDEEENISEAIAMLGRQFNRLIKRMDPKSRSNVHNIPSDIDSSSRRPRSED-KGNQGRGIQCHGCEGYGHIRAECPTFLKKQKKGMTVTWSDYDSESNSEEESAKLVTALTSVCTSESDTSD--EEVTFEELADTYKKLCIRSAEVCVQNEKQSKLIIKLEAEKRANLETISHLEGEVQLLNSQLNQMTKSVKMLTNGTDKLEEILQVGQNVGNKSGLGFMEAKKSG---------TGKQMSKRMSQHNSQHQEQRHMKKRYQRWKCHHCGRYGHIKPFCFRLHGYPNQISGVKPKSKKVPHAPQWKKKTTALIAHTSLRVSAKEDWYFDSGCSRHMTGIKNLLNNVKPHTTSFVTFGDGAKGEIKGVGDLDCPGVPSLNEVLLVKGLTANLISISQLCDLGFKVNFSRSECLVINDKQEIVMKGVRSKENCYLWEAENTNSSSVYSIAKEEKEVKLWQHKLGLLHLRRMKRAISMETVRRTPKLQVLRGRI 579 M E+E IH+FHMNILEIAN ALGE++++EKLVRKILRSLPKRF MKVTAIEEAQDI ++VDELIGSLQTFE+G++D +KK+K++A VSN + E Y + +E ++ A+ +LG+QFN+++ RMD + + +V NIP DI S+ + D K + +GIQCHGCEGYGHI AECPT LKK +KG++V SD +ES E +S + V ALT + + D+SD E+TF+ELA +Y+KLCI+S ++ Q + K+I LEAEK A+ E IS L+GEV LNS+L MTKS+KML G+D L+E+L +G+N GN+ GLGF K +G + MSQH S+H + K + ++W+CH+CG+YGHIKPFC+ LH P+ + KK+ P K K +L+ HTSLR SAKEDWY DSGCSRHMTG+K L N++P +TS+VTFGDG+KG+I G+G L G+PSLN+VLLVKGLTANLISISQLCD GF VNF++SECLV N+K E++MKG RSK+NCYLW + T+ SS ++ +E EV++W + G LHLR MK+ I VR P L++ GRI Sbjct: 139 MKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGSLQTFELGLSDRAEKKSKNLAFVSNDEGEEDEYDLNTDEGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNIPFDIRKGSKYQKKSDVKPSHSKGIQCHGCEGYGHIIAECPTHLKKHRKGLSVCQSD--TESEQESDSDRDVNALTGIFETAEDSSDTDSEITFDELATSYRKLCIKSEKILQQEAQLKKVIADLEAEKEAHKEEISELKGEVGFLNSKLENMTKSIKMLNKGSDTLDEVLLLGKNAGNQRGLGF-NPKSAGRTTMTEFVPAKNRTGATMSQHRSRHHGMQQKKSKRKKWRCHYCGKYGHIKPFCYHLH--PHHGTQSSNSRKKMMWVP--KHKAVSLVVHTSLRASAKEDWYLDSGCSRHMTGVKEFLLNIEPCSTSYVTFGDGSKGKIIGMGKLVHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNCYLWTPQETSYSST-CLSSKEDEVRIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRI 724
BLAST of Vfaba.Hedin2.R1.3g041600.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3NW61|A0A2K3NW61_TRIPR (Gag-protease polyprotein OS=Trifolium pratense OX=57577 GN=L195_g003741 PE=4 SV=1) HSP 1 Score: 568.926 bits (1465), Expect = 0.000e+0 Identity = 314/645 (48.68%), Postives = 416/645 (64.50%), Query Frame = 0 Query: 1 MMEDETIHEFHMNILEIANTSGALGEKMSEEKLVRKILRSLPKRFAMKVTAIEEAQDISKLKVDELIGSLQTFEMGITDNGDKKNKSIALVSNTDVEYK---EDEEENISEAIAMLGRQFNRLIKRMDPKSRSNVHNIPSDIDSSS---RRPRSEDKGNQGRGIQCHGCEGYGHIRAECPTFLKKQKKGMTVTWSDYDSESNSEEES-AKLVTALTSVCTSESDTSDEEVTFEELADTYKKLCIRSAEVCVQNEKQSKLIIKLEAEKRANLETISHLEGEVQLLNSQLNQMTKSVKMLTNGTDKLEEILQ---------------VGQNVG-NKSGL---------------------GFMEAKKSGTGKQM-------------SKRMSQHNSQHQEQRHMKKRYQR--WKCHHCGRYGHIKPFCFRLHGYPNQISGVKPKSKKVPHAPQWKKK--TTALIAHTSLRVSAKEDWYFDSGCSRHMTGIKNLLNNVKPHTTSFVTFGDGAKGEIKGVGDLDCPGVPSLNEVLLVKGLTANLISISQLCDLGFKVNFSRSECLVINDKQEIVMKGVRSKENCYLWEAENTNSSSVYSIAKEEKEVKLWQHKLGLLHLRRMKRAISMETVRRTPKLQVLRGRIATRVR 584 M E+ET+H+FHMN+LE AN ALGE +SEEKL KILRSLPKRF MKVTAIEEAQD++ ++VDELIGSLQT+E+ I DKKNKS+A SN E + ++ +E++SEA+ +LG+QFN+L+KRMD ++R NV +I D + RRPRS++K NQ RG+ CH CEG+GHIRAECPTFLK QKK + VTWSD D E AKLV ALT C S+++T D ++EEL DTYK+L + EVC E+ K +L+AEK L I L +V+ L+S+L K V++ + G +K +L + Q G NK+ + G + + T ++ + + QH S H+ + K RY+R W+CHHCGR GHI+P+C+RL+GYP + P++ KV +WK+K +LIAHTSLR S+++DWYFDSGCSRHMTG++ L N+K + TS+VTFGDGAKGEIKG+G+L GVP+L+ VLLVKGLTANLISISQLCD G KVNF++SECLV N++ ++M+GVRS++NCYLW +E N S ++KE+ EVKLW KLG LHLR MK AI E +R PKL++ G I R Sbjct: 144 MKEEETVHDFHMNVLEFANNFDALGENISEEKLASKILRSLPKRFDMKVTAIEEAQDLASIQVDELIGSLQTYELSINQRKDKKNKSLAFTSNARDEQETGDQESDESLSEAMVLLGKQFNKLMKRMDKRTRPNVPSIRFDTNKQPNNLRRPRSDEKPNQPRGVLCHECEGHGHIRAECPTFLKGQKKSLAVTWSDDDDSEEEGESESAKLVYALTGRCESDAETCDG-TSYEELMDTYKELLTSNYEVCKALERLKKTNCQLQAEKSDCLTKIDVLNKKVEKLSSELEHARKQVEVYSIGDEKYRAMLMNQNAGKKPIGFDYEIINQQTGYNKATINTPIDKTFPVSSVQPSTNLEKGVLLPPLTATNQKTYSWLKAKPKYPVNPEPVFQHPSAHR-KNWPKPRYRRHNWRCHHCGRKGHIRPYCYRLYGYPKRTPNPVPEADKVETKREWKEKEKDVSLIAHTSLRASSRQDWYFDSGCSRHMTGVEGYLVNLKSYATSYVTFGDGAKGEIKGIGNLINAGVPNLDNVLLVKGLTANLISISQLCDQGMKVNFTQSECLVTNEEGTLMMRGVRSRDNCYLWVSEEENHLSTCYLSKED-EVKLWHQKLGHLHLREMKNAIVEEAIRGLPKLKIEEGNICGECR 785
BLAST of Vfaba.Hedin2.R1.3g041600.1 vs. UniProtKB/TrEMBL
Match: tr|A0A392LWL9|A0A392LWL9_9FABA (Gag-protease polyprotein OS=Trifolium medium OX=97028 GN=A2U01_0000106 PE=4 SV=1) HSP 1 Score: 567.385 bits (1461), Expect = 0.000e+0 Identity = 310/622 (49.84%), Postives = 415/622 (66.72%), Query Frame = 0 Query: 1 MMEDETIHEFHMNILEIANTSGALGEKMSEEKLVRKILRSLPKRFAMKVTAIEEAQDISKLKVDELIGSLQTFEMGITDNGDKKNKSIALVSNT---DVEYKEDEEENISEAIAMLGRQFNRLIKRMDPKSRSNVHNIPSDIDSSSRRPRSEDKGNQGRGIQCHGCEGYGHIRAECPTFLKKQKKGMTVTWSDYDSESNSEEESAKLVTALTSVCTSESDTSDEEVTFEELADTYKKLCIRSAEVCVQNEKQSKLIIKLEAEKRANLETISHLE----------------------------GEVQLLNSQLNQMTKSVKMLTNGTDKLEEILQVGQNVGNKSGLGF--------MEAKKSGTGKQMSKRMSQHNSQHQEQRHMKKRYQRWKCHHCGRYGHIKPFCFRLHGYPNQI--SGVKPKSKKVPHAPQW--KKKTTALIAHTSLRVSAKEDWYFDSGCSRHMTGIKNLLNNVKPHTTSFVTFGDGAKGEIKGVGDLDCPGVPSLNEVLLVKGLTANLISISQLCDLGFKVNFSRSECLVINDKQEIVMKGVRSKENCYLWEAENTNSSSVYSIAKEEKEVKLWQHKLGLLHLRRMKRAISMETVRRTPKLQVLRGRI 579 M E+ETIH+F MN+L+ AN+ ALG+ +S+E+LV KILRSLPKRF MKVT IEEA+D+S L +DELIGSLQT+E+G+ +KK+K++A S + D++ + + EE+++E++AMLGRQFN+L+K++D +++ N ++ SSS++ +ED+ +G++CH CEG+GHIR ECPTFLK+QKK + +WSD DSE EEES K V ALT VC S+S++ DEEVT+EELA TYK L RS EVC EKQ K+ KL+AE+ L I++L EV LN+ L+Q+TK VKM+T GTD EE+LQ QN G +GF M+ + +S H R+ W CHHCGR GHI+PFC+RLHGYP ++ P V +W KKK T LIAHTSLR S++E W+FDSGCSRHMTG+++ L ++K + +SFVTFGDGAKGEIKGVG L G+P L+ VLLVKGL ANLISISQLCD G KVNF+++ECLV N++ E++MKGVRS++NCYLW + + S+ I+KE+ EVKLW KLG LHL+ MK+AI+ E +R PKL++ G I Sbjct: 138 MKEEETIHDFQMNVLDFANSFDALGKPISDEELVGKILRSLPKRFDMKVTTIEEARDLSSLNLDELIGSLQTYEIGLNRRNEKKDKNLAFASKSTADDLQVESESEESLAESMAMLGRQFNKLMKKLDQRAKPN-GRFNNNKQSSSQKKTNEDE----KGVRCHECEGFGHIRPECPTFLKRQKKSLVASWSDTDSE---EEESYKFVNALTGVCVSDSESCDEEVTYEELAATYKDLHNRSIEVCKALEKQKKINGKLQAERNDLLMNINNLNIKVEDQSSQIRQLEMEKSKLLCKVAEQGEEVTKLNADLDQITKVVKMMTKGTDAFEEMLQ-RQNYGKPKPIGFEHERVKQQMKFNNATVHTPISSTFVSGGLSRHLMGHPMPRFYNWTCHHCGRKGHIRPFCYRLHGYPRKVHQESYTPAFPNVSTRMEWREKKKITGLIAHTSLRASSRETWHFDSGCSRHMTGVEHYLEDLKSYASSFVTFGDGAKGEIKGVGKLANHGLPKLDNVLLVKGLKANLISISQLCDQGMKVNFTKAECLVTNEQGELLMKGVRSRDNCYLWIPKEEDVSTCL-ISKED-EVKLWHQKLGHLHLKGMKKAIAKEAIRGLPKLKIEEGSI 748
BLAST of Vfaba.Hedin2.R1.3g041600.1 vs. UniProtKB/TrEMBL
Match: tr|A0A392LY02|A0A392LY02_9FABA (Gag-pol polyprotein OS=Trifolium medium OX=97028 GN=A2U01_0000574 PE=4 SV=1) HSP 1 Score: 560.066 bits (1442), Expect = 0.000e+0 Identity = 313/674 (46.44%), Postives = 422/674 (62.61%), Query Frame = 0 Query: 1 MMEDETIHEFHMNILEIANTSGALGEKMSEEKLVRKILRSLPKRFAMKVTAIEEAQDISKLKVDELIGSLQTFEMGITDNGDKKNKSIALVSNTDVEYKEDE---EENISEAIAMLGRQFNRLIKRMDPKSRSNVHNIPSDIDSSSRRPRSEDKGNQGRGIQCHGCEGYGHIRAECPTFLKKQKKGMTVTWSDYDSESNSEEESAKLVTALTSVCTSESDTSDEEVTFEELADTYKKLCIRSAEVCVQNEKQSKLIIKLEAEKR---------------------------ANLET--------ISHLEGEVQLLNSQLNQMTKSVKMLTNGTDKLEEILQ-VGQNVGNKSGLGF----------------------------MEAKKS--------GTGKQMSKRMSQHNSQHQEQRHM---KKRYQRWKCHHCGRYGHIKPFCFRLHGYPNQISGVKPKSKKVPHAPQWKKKTT--------------ALIAHTSLRVSAKEDWYFDSGCSRHMTGIKNLLNNVKPHTTSFVTFGDGAKGEIKGVGDLDCPGVPSLNEVLLVKGLTANLISISQLCDLGFKVNFSRSECLVINDKQEIVMKGVRSKENCYLW-EAENTNSSSVYSIAKEEKEVKLWQHKLGLLHLRRMKRAISMETVRRTPKLQVLRGRIAT 581 M +DETI EFHM IL+ N LGEK+ EEKLVRK+LRSLPK+F MKVTAIEEA+DI+++K+DEL+GSLQT+E+ + +KK KSIA VSN + E ++ + E +IS+A+ +LG+QFN+++K MD + +++ + + + R+P S++K + +QC CEGYGHIR EC TFLKKQKKG+TV+WSD DSE E ++AK + ALT VCTS++++ DEE+TF+ELA++YK+LC+RS EVC +EKQ + I KL+ E+ ANLET IS L EV LNS L + K V ML GTD L+EIL+ + K+G+G+ M K S T +Q+ M+ H + + R + K +Y+ W+CHHCGR GHI+P+C++L+GYPN+ K +WK+K +LIAHTSLR S+KEDWYFDSGCS+HMTG++ L ++K + TSFVTFGDGAKGEIKG+G L G+P L VL+VKGLTANLISI QLCD G +VNF+++ECLV ND+ +I+MKGVRSK+NCYLW E N S+ + +E EVKLW KL L+L+ MKRAIS ET+R P LQ+ G I + Sbjct: 138 MNDDETIQEFHMTILDYDNQFDVLGEKIPEEKLVRKMLRSLPKKFDMKVTAIEEAKDITEMKLDELVGSLQTYEVATNERMNKKTKSIAFVSNAEEEDQQSDTESENSISDAMVLLGKQFNKVLKIMDKRPKTSAADTGRNTYRNFRKPMSDEKTALNKSVQCLECEGYGHIRTECATFLKKQKKGLTVSWSDEDSEG--EVDTAKSIHALTGVCTSDTESCDEELTFDELAESYKELCLRSEEVCRISEKQKETISKLQTERIVNLTKISEIGVKCEEGLKTIEEQKAIIANLETDKLEQLAEISKLNEEVTELNSHLENLKKHVVMLFKGTD-LDEILEKLPTPSRAKTGIGYEYKSVNRIKDYNKDGKYMPEISKQPSPTMYGKMSPHLSTGHRTTHRQVLPHMAPHRQRRKNPRFIPRHKSKYRSWRCHHCGRKGHIRPYCYKLYGYPNETIQEKLDPSITNAKKEWKQKVDVTNTKGCVAESCEKSLIAHTSLRASSKEDWYFDSGCSKHMTGVEKYLMDIKSYATSFVTFGDGAKGEIKGIGRLIDNGLPKLENVLIVKGLTANLISIRQLCDQGMQVNFTKNECLVSNDEGDILMKGVRSKDNCYLWVPLEEANVSTC--LLTKEDEVKLWHQKLRHLNLKSMKRAISEETIRGLPNLQIEEGNICS 806
BLAST of Vfaba.Hedin2.R1.3g041600.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3N8X7|A0A2K3N8X7_TRIPR (Gag-protease polyprotein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g022769 PE=4 SV=1) HSP 1 Score: 547.74 bits (1410), Expect = 3.148e-179 Identity = 309/638 (48.43%), Postives = 423/638 (66.30%), Query Frame = 0 Query: 1 MMEDETIHEFHMNILEIANTSGALGEKMSEEKLVRKILRSLPKRFAMKVTAIEEAQDISKLKVDELIGSLQTFEMGITDNGDKKNKSIALVSNTDVEYKEDEEENISE---AIAMLGRQFNRLIKRMDPKSRSNV-HNIPSDI--DSSSRRPRSEDKGNQGRGIQCHGCEGYGHIRAECPTFLKKQKKGMTVTWSDYDSESN-SEEESAKLVTALTSVCTSESDTSDEEVTFEELADTYKKLCIRSAEVCVQNEKQSKLIIKLEAEKRANLETISHLEGEVQLLNSQLNQ--------------MTKSVKMLTNGTD----------KLEEILQVG----QNVG------NK-----SGLGFMEAKKSGTGKQ-MSKRMSQHNSQHQEQRHMKKRYQRWKCHHCGRYGHIKPFCFRLHGYPNQISGVKPKSKKVPHAPQWK------------KKTTALIAHTSLRVSAKEDWYFDSGCSRHMTGIKNLLNNVKPHTTSFVTFGDGAKGEIKGVGDLDCPGVPSLNEVLLVKGLTANLISISQLCDLGFKVNFSRSECLVINDKQEIVMKGVRSKENCYLWEAENTNSSSVYSIAKEEKEVKLWQHKLGLLHLRRMKRAISMETVRRTPKLQVLRGRI 579 M E+ETI EFHM IL+ N +LGEK+ EEKLVRK+LRSLPKRF MKVTA+EEA+DIS++++D+L+GSLQT+E I++ G+KKNKSIAL S + E EDEEE+ A+ +LG+QFN+++KRMD + RSN +N P + + + + RS++K + R I+CH CEGYGHIR ECPT+ K+ KKG+T +WS+ D + + +AK ++ LT + TS++++ D EVT+EELA++Y++LC++S E+C EKQ I +L+AEK N+ + L+ +V L+S L + + K ML D +LEEIL+ +N+G NK L +M+ K+ T KQ M + QH QHQ R+ K+R+ W+CH+CGR GHI+PFC++L+GYPN KP S + +WK K+TTALIAHTSLR S++EDWYFDSGCSRHMTG+ L ++K + TS+VTFGDGAKGEI G+G+L +P LN VLLV+GLTANLISISQLCD G KVNF++SECLV +++ EI+MKGVRSK+NCYLW + + S I KE+ EVKLW +LG L+LR MK+AIS E +R P L++ G I Sbjct: 142 MKEEETIQEFHMTILDYDNQFDSLGEKIPEEKLVRKMLRSLPKRFDMKVTAMEEAKDISQMQLDDLVGSLQTYESTISERGEKKNKSIALSSKNNEEELEDEEEHSESISEAMVLLGKQFNKVLKRMDKRPRSNFKNNAPGTMRNNENQGKQRSDEKPSLNRNIRCHECEGYGHIRPECPTYQKRAKKGLTASWSEDDDSEDDTASVTAKHISVLTGIVTSDTESYDGEVTYEELAESYRELCLKSEEICRVIEKQKVTINELKAEKFENISKMEELQKKVNYLSSDLEEANGLIEKLNADIWRLRKFSDMLYKDDDHLDKLHKADGQLEEILEKNVRKPRNIGLSYENVNKFKNYSPDLMYMDPKE--TQKQSMPHKKPQHLQQHQMSRN-KRRHNSWRCHYCGRKGHIRPFCYKLYGYPNSRPQHKPASTTLSTQQEWKPKAKDEKKSDTEKETTALIAHTSLRASSREDWYFDSGCSRHMTGVSKFLVDIKSYATSYVTFGDGAKGEIVGIGELKSNSLPKLNNVLLVRGLTANLISISQLCDQGMKVNFTKSECLVTSNEGEILMKGVRSKDNCYLWVPQEGANVSTCLITKED-EVKLWHQRLGHLNLRSMKKAISEEAIRGLPNLKIEEGSI 775
BLAST of Vfaba.Hedin2.R1.3g041600.1 vs. Araport11
Match: AT4G05360.1 (| Zinc knuckle (CCHC-type) family protein | Chr4:2728204-2732337 FORWARD LENGTH=735 | 201606) HSP 1 Score: 77.411 bits (189), Expect = 1.607e-14 Identity = 73/275 (26.55%), Postives = 114/275 (41.45%), Query Frame = 0 Query: 156 RGIQCHGCEGYGHIRAECPTFLKKQKKGMTVTWSDYDSESNSEEESAKLVTAL--------------TSVCTSESDTSDEEVT---------------FEELADTYKKLCIRSAEVCVQNEKQSKLIIKLEAEKRANLETISHLEGEVQLLNSQLNQMTKSVKMLTNGTDKLEEILQVGQNVGNKSGLGFME---------------AKKSGTGKQMSK----------------RMSQHNSQHQEQRHMKKRYQRWKCHHCGRYGHIKPFCFRL 370 +G +C C+G+ H+ +EC +K+++K ++ S+ DS+ E ++ T S S S ++ T EE A+ YK L +V +N +K +KLEA+ L+ + E E SQL + K+++ML NGT KL IL +G+ +K GLGF SGT K+ + + + Q+ + +R R CHHCG GHI+P CFRL Sbjct: 376 KGKRCFECKGFRHMCSECANLMKEKEKKFIMSDSEIDSDDGEELKNLVAFTTFESSIASASASGPTSASATGSTSASATGPATGSDNDQSDDDDLSISDEEFAENYKALYEHCVKVVEENSVLTKEKLKLEAKVVKTLKFAAEKEEEA----SQLEETQKNLRMLNNGTKKLGHILSIGKT--DKCGLGFKGNPSKSDPVFVYGGKITSASGTVKETATVAEIASDTRTDSRTDTETTSGTRKVQKLQSEPRRVFRPVCHHCGVVGHIRPRCFRL 644 The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.3g041600.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL) Total hits: 10
BLAST of Vfaba.Hedin2.R1.3g041600.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot) Total hits: 0
BLAST of Vfaba.Hedin2.R1.3g041600.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11) Total hits: 1
InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vfaba.Hedin2.R1.3g041600.1_vfh_v1 ID=Vfaba.Hedin2.R1.3g041600.1_vfh_v1; Name=Vfaba.Hedin2.R1.3g041600.1; organism=Vicia faba; type=mRNA; length=1887bpback to top protein sequence of Vfaba.Hedin2.R1.3g041600.1_vfh_v1 >Vfaba.Hedin2.R1.3g041600.1_vfh_v1 ID=Vfaba.Hedin2.R1.3g041600.1_vfh_v1; Name=Vfaba.Hedin2.R1.3g041600.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=628bpback to top mRNA from alignment at chr3:250795481..250803718+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>Vfaba.Hedin2.R1.3g041600.1_vfh_v1 ID=Vfaba.Hedin2.R1.3g041600.1_vfh_v1; Name=Vfaba.Hedin2.R1.3g041600.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr3:250795481..250803718+ (Vicia fababack to top Annotated Terms
The
following terms have been associated with
this mRNA:
|