Vfaba.Hedin2.R1.3g043480.1
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Vfaba.Hedin2.R1.3g043480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3L717|A0A2K3L717_TRIPR (DNA excision repair protein ERCC-8-like (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g030240 PE=4 SV=1) HSP 1 Score: 280.026 bits (715), Expect = 1.103e-88 Identity = 158/294 (53.74%), Postives = 186/294 (63.27%), Query Frame = 0
Query: 102 NLRGLEVLELQGERVVSRVLSATNEEGRVKGENSIEHVTYEEDAI-----DADDNDERLTKSSNASDKAFEVLKEFCCNGTVVEDPELGQVCLLFFMPTNP-------KTSLDCSIDTGLFVTGSYDHYVNVWDTNTTQVVVNFKMPDKLELRMYKFGFVN-------------------CDIASGAFAHTLSGHRDGVMTVEWSASSEWVLITGGCDGAIRFWDIRHAGCFQVLNQSRTQLGRRPPILKRSSITKESSTKMHAAQKKFVNGSGSGQLPIGRLSSRGPMKQKLQ 364
N+R E +LQ +R+ S N +++ N E V+ + AI D + L+ +S+AS ++V + G + + CL + +++ IDTGLF+TGSYDHYVNVWDTNTTQVVVNFKMP K+ YK CDI SGAFAHTLSGHRDGVMTVEWSASSEWVLITGGCDGAIRFWDIR AGC+QVLNQSRTQLGRRPPILKRS +TKESSTKM A+QKK NGSGSGQL IGRLSS+GPMKQKL
Sbjct: 6 NIRDREFGKLQPNSFSNRIKS--NRISQLQLSNHKELVSSHKGAINSLQIDLTEGRYLLSSASDASVAVYDVQRPSDYTGVISK-----HSCLFVIDKQHQLAHKYAVSSAIWYPIDTGLFITGSYDHYVNVWDTNTTQVVVNFKMPGKV----YKTAMSTLSTSHTLIAVGTEDVQVRLCDITSGAFAHTLSGHRDGVMTVEWSASSEWVLITGGCDGAIRFWDIRRAGCYQVLNQSRTQLGRRPPILKRSMLTKESSTKMRASQKKLANGSGSGQLAIGRLSSKGPMKQKLH 288
BLAST of Vfaba.Hedin2.R1.3g043480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2Y9I5|A0A1S2Y9I5_CICAR (WD repeat-containing protein ATCSA-1 OS=Cicer arietinum OX=3827 GN=LOC101499900 PE=4 SV=1) HSP 1 Score: 273.478 bits (698), Expect = 1.603e-84 Identity = 159/291 (54.64%), Postives = 189/291 (64.95%), Query Frame = 0
Query: 102 NLRGLEVLELQGERVVSRVLSATNEEGRVKGENSIEHVTYEEDAI-----DADDNDERLTKSSNASDKAFEVLKE--FCCNGTVVEDPELGQVCLLFFMPTNPKTS--LDCSIDTGLFVTGSYDHYVNVWDTNTTQVVVNFKMPDKLELRMYKFGFVN-------------------CDIASGAFAHTLSGHRDGVMTVEWSASSEWVLITGGCDGAIRFWDIRHAGCFQVLNQSRTQLGRRPPILKRSSITKESSTKMHAAQKKFVNGSGSGQLPIGRLSSRGPMKQKLQ 364
N+R E +L+ + +R+ S N +++ N E V+ + AI D + L+ +S+AS ++V + + NG + + L V + S + IDTGLFVTGSYDHYVNVWDTNTTQVVVNFKMP K+ YK CDIASGAFAHTLSGHRDGVMTVEWSASSEW+LITGGCDGAIRFWDIR AGCFQVLNQSRTQLGRRPPILKRS TK+SSTK+ +AQKKF NGSGSGQLPIGRLSS+G +KQKL
Sbjct: 6 NIRDRESGKLRADSFANRIKS--NRISQLELSNHKELVSPHKGAINSLQIDLTEGRYLLSAASDASVAVYDVQRPSGYEGNGVISKHSSLFVVDKQHQLGHKYAVSSAIWYPIDTGLFVTGSYDHYVNVWDTNTTQVVVNFKMPGKV----YKTAMSTLSTSHMLIAVGTEDVQVRLCDIASGAFAHTLSGHRDGVMTVEWSASSEWILITGGCDGAIRFWDIRRAGCFQVLNQSRTQLGRRPPILKRSVTTKDSSTKVRSAQKKFGNGSGSGQLPIGRLSSKGQLKQKLH 290
BLAST of Vfaba.Hedin2.R1.3g043480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A072V1E5|A0A072V1E5_MEDTR (Putative transcription factor WD40-like family OS=Medicago truncatula OX=3880 GN=25489968 PE=4 SV=1) HSP 1 Score: 270.781 bits (691), Expect = 1.932e-83 Identity = 146/250 (58.40%), Postives = 169/250 (67.60%), Query Frame = 0
Query: 146 IDADDNDERLTKSSNASDKAFEVLKEFCCNGTVVEDPELGQVCLLFFMPTNPK--------TSLDCSIDTGLFVTGSYDHYVNVWDTNTTQVVVNFKMPDKLELRMYKFGFVN-------------------CDIASGAFAHTLSGHRDGVMTVEWSASSEWVLITGGCDGAIRFWDIRHAGCFQVLNQSRTQLGRRPPILKRSSITKESSTKMHAAQKKFVNGSGSGQLPIGRLSSRGPMKQKLQSSQV 368
ID + L+ +S+AS ++V + NG D + + LFF+ + +++ IDTGLF+TGSYDH+VNVWDTNTTQVVVNFKMP K+ YK CDIASGAFAHTLSGHRDGVMTVEWSASSEWVLITGGCDGAIRFWDIR AGCFQVLNQS+TQLGRRPP+LKRS +TKES+TKM QKK NGSGSG LPIGRLSS+GPMKQKL +
Sbjct: 53 IDLTEGRYLLSAASDASVAVYDVHRPSDFNG----DGLITKHNCLFFVDKQHQLAHKYAVSSAIWYPIDTGLFITGSYDHHVNVWDTNTTQVVVNFKMPGKV----YKTAMSTLSTSHTLIAAGTEDVQVRLCDIASGAFAHTLSGHRDGVMTVEWSASSEWVLITGGCDGAIRFWDIRRAGCFQVLNQSQTQLGRRPPLLKRSVLTKESNTKMRPVQKKVANGSGSGHLPIGRLSSKGPMKQKLHPGMI 294
BLAST of Vfaba.Hedin2.R1.3g043480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445KVT9|A0A445KVT9_GLYSO (WD repeat-containing protein ATCSA-1 OS=Glycine soja OX=3848 GN=D0Y65_008764 PE=4 SV=1) HSP 1 Score: 264.618 bits (675), Expect = 4.969e-81 Identity = 147/295 (49.83%), Postives = 188/295 (63.73%), Query Frame = 0
Query: 103 LRGLEVLELQGERVVSRVLSATNEEGRVKGENSIEHVTYEEDAIDA---DDNDER--LTKSSNASDKAFEVLKEFCCNGTVVEDPELGQVCLLFFMPTNPK--------TSLDCSIDTGLFVTGSYDHYVNVWDTNTTQVVVNFKMPDKLELRMYKFGFVN-------------------CDIASGAFAHTLSGHRDGVMTVEWSASSEWVLITGGCDGAIRFWDIRHAGCFQVLNQSRTQLGRRPPILKRSSITKESSTKMHAAQKKFVNGSGSGQLPIGRLSSRGPMKQKLQS 365
+R E +L+ +R+ S N +++ N + V+ + AI++ D + R L+ +S+AS ++V + + + +F + + T++ IDTGLFVTGSYDH++NVWDTNTTQVVVNFKMP K+ ++ N CDIASGAFAHTLSGHRDGVMTVEWS SSEWVL+TGGCDGAIRFWDIR AGCFQVL+QS+TQLGRRPPILKRS ITK+SSTK+ AAQKK NGSGS Q PIGR+ S+GPMKQ+L +
Sbjct: 13 IRDREAGKLRANHFANRIKS--NRISQLQLSNHKDIVSPHKGAINSLQVDSTEGRYLLSAASDASVAVYDVQRPTVYEAGGGGGGGISKHSSIFVVDKQHQQGHKYAVSTAIWYPIDTGLFVTGSYDHHINVWDTNTTQVVVNFKMPGKV----HRAAMSNLSTSHMLIAAATEDVQVRLCDIASGAFAHTLSGHRDGVMTVEWSNSSEWVLVTGGCDGAIRFWDIRRAGCFQVLDQSQTQLGRRPPILKRSMITKDSSTKLRAAQKKHANGSGSRQQPIGRVPSKGPMKQRLHT 301
BLAST of Vfaba.Hedin2.R1.3g043480.1 vs. UniProtKB/TrEMBL
Match: tr|I1JTR0|I1JTR0_SOYBN (WD_REPEATS_REGION domain-containing protein OS=Glycine max OX=3847 GN=100815581 PE=4 SV=1) HSP 1 Score: 264.233 bits (674), Expect = 8.417e-81 Identity = 147/294 (50.00%), Postives = 187/294 (63.61%), Query Frame = 0
Query: 103 LRGLEVLELQGERVVSRVLSATNEEGRVKGENSIEHVTYEEDAIDA---DDNDER--LTKSSNASDKAFEVLKEFCCNGTVVEDPELGQVCLLFFMPTNPK--------TSLDCSIDTGLFVTGSYDHYVNVWDTNTTQVVVNFKMPDKLELRMYKFGFVN-------------------CDIASGAFAHTLSGHRDGVMTVEWSASSEWVLITGGCDGAIRFWDIRHAGCFQVLNQSRTQLGRRPPILKRSSITKESSTKMHAAQKKFVNGSGSGQLPIGRLSSRGPMKQKLQ 364
+R E +L+ +R+ S N +++ N + V+ + AI++ D + R L+ +S+AS ++V + + + +F + + T++ IDTGLFVTGSYDH++NVWDTNTTQVVVNFKMP K+ ++ N CDIASGAFAHTLSGHRDGVMTVEWS SSEWVL+TGGCDGAIRFWDIR AGCFQVL+QS+TQLGRRPPILKRS ITK+SSTK+ AAQKK NGSGS Q PIGR+ S+GPMKQ+L
Sbjct: 13 IRDREAGKLRANHFANRIKS--NRISQLQLSNHKDIVSPHKGAINSLQVDSTEGRYLLSAASDASVAVYDVQRPTVYEAGGGGGGGISKHSSIFVVDKQHQQGHKYAVSTAIWYPIDTGLFVTGSYDHHINVWDTNTTQVVVNFKMPGKV----HRAAMSNLSTSHMLIAAATEDVQVRLCDIASGAFAHTLSGHRDGVMTVEWSNSSEWVLVTGGCDGAIRFWDIRRAGCFQVLDQSQTQLGRRPPILKRSMITKDSSTKLRAAQKKHANGSGSRQQPIGRVPSKGPMKQRLH 300
BLAST of Vfaba.Hedin2.R1.3g043480.1 vs. UniProtKB/TrEMBL
Match: tr|V7AVX2|V7AVX2_PHAVU (WD_REPEATS_REGION domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_009G071700g PE=4 SV=1) HSP 1 Score: 258.455 bits (659), Expect = 1.294e-78 Identity = 128/181 (70.72%), Postives = 142/181 (78.45%), Query Frame = 0
Query: 199 TSLDCSIDTGLFVTGSYDHYVNVWDTNTTQVVVNFKMPDKLE-LRMYKFGFVN--------------CDIASGAFAHTLSGHRDGVMTVEWSASSEWVLITGGCDGAIRFWDIRHAGCFQVLNQSRTQLGRRPPILKRSSITKESSTKMHAAQKKFVNGSGSGQLPIGRLSSRGPMKQKLQ 364
T++ IDTGLFVTGSYDH++NVWDTNTTQVVVNFKMP K+ M + CDIASGAFAHTLSGHRDGVMTVEWS SSEWVL+TGGCDGAIRFWDIR AGCFQVL+QS+TQ GRRPPILKRS+ITK+SSTKM AQKK NGSGS Q PIGR+ S+GPMKQ+L
Sbjct: 114 TAIWYPIDTGLFVTGSYDHHINVWDTNTTQVVVNFKMPGKVHRTAMSNLSTSHMLIAAGTEDVQVRLCDIASGAFAHTLSGHRDGVMTVEWSNSSEWVLVTGGCDGAIRFWDIRRAGCFQVLDQSQTQFGRRPPILKRSTITKDSSTKMRGAQKKHANGSGSRQHPIGRVPSKGPMKQRLH 294
BLAST of Vfaba.Hedin2.R1.3g043480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A151TTT2|A0A151TTT2_CAJCA (DNA excision repair protein ERCC-8 OS=Cajanus cajan OX=3821 GN=KK1_009621 PE=4 SV=1) HSP 1 Score: 256.914 bits (655), Expect = 4.613e-78 Identity = 127/179 (70.95%), Postives = 140/179 (78.21%), Query Frame = 0
Query: 205 IDTGLFVTGSYDHYVNVWDTNTTQVVVNFKMPDKLELRMYKFGFVN-------------------CDIASGAFAHTLSGHRDGVMTVEWSASSEWVLITGGCDGAIRFWDIRHAGCFQVLNQSRTQLGRRPPILKRSSITKESSTKMHAAQKKFVNGSGSGQLPIGRLSSRGPMKQKLQ 364
IDTGLFVTGSYDH++NVWDTNTTQVVVNFKMP K+ ++ N CDIASGAFAHTLSGHRDGVMTVEWS SSEWVL+TGGCDGAIRFWDIR AGCF VL+QSRTQLGRRPP+LKRS ITK+SSTK+ AAQKK GSGS QLPIGR+ S+GPMKQ+L
Sbjct: 114 IDTGLFVTGSYDHHINVWDTNTTQVVVNFKMPGKV----HRTAMSNLSTSHMLIAAGTEDVQVRLCDIASGAFAHTLSGHRDGVMTVEWSNSSEWVLVTGGCDGAIRFWDIRRAGCFLVLDQSRTQLGRRPPVLKRSMITKDSSTKLRAAQKKHAIGSGSRQLPIGRVPSKGPMKQRLH 288
BLAST of Vfaba.Hedin2.R1.3g043480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3RB39|A0A0S3RB39_PHAAN (WD_REPEATS_REGION domain-containing protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.02G052700 PE=4 SV=1) HSP 1 Score: 256.144 bits (653), Expect = 8.359e-78 Identity = 127/181 (70.17%), Postives = 141/181 (77.90%), Query Frame = 0
Query: 199 TSLDCSIDTGLFVTGSYDHYVNVWDTNTTQVVVNFKMPDKLE-LRMYKFGFVN--------------CDIASGAFAHTLSGHRDGVMTVEWSASSEWVLITGGCDGAIRFWDIRHAGCFQVLNQSRTQLGRRPPILKRSSITKESSTKMHAAQKKFVNGSGSGQLPIGRLSSRGPMKQKLQ 364
T++ IDTGLFVTGSYDH++NVWDTNTTQVVVNFKMP K+ + M + CDIASGAFAHTLSGHRDGVMTVEWS SSEWVLITGGCDGAIRFWDIR AGCFQVL+QS+TQLGRRPPILKRS ITK+SS K+ AQKK NGSG Q PIGR+ S+GPMKQ+L
Sbjct: 112 TAIWYPIDTGLFVTGSYDHHINVWDTNTTQVVVNFKMPGKVHRIAMSNLSTSHMLIAAGTEDVQVRLCDIASGAFAHTLSGHRDGVMTVEWSNSSEWVLITGGCDGAIRFWDIRRAGCFQVLDQSQTQLGRRPPILKRSMITKDSSAKLRGAQKKHANGSGYKQQPIGRVPSKGPMKQRLH 292
BLAST of Vfaba.Hedin2.R1.3g043480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9UHI0|A0A0L9UHI0_PHAAN (WD_REPEATS_REGION domain-containing protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan04g242100 PE=4 SV=1) HSP 1 Score: 256.144 bits (653), Expect = 8.359e-78 Identity = 127/181 (70.17%), Postives = 141/181 (77.90%), Query Frame = 0
Query: 199 TSLDCSIDTGLFVTGSYDHYVNVWDTNTTQVVVNFKMPDKLE-LRMYKFGFVN--------------CDIASGAFAHTLSGHRDGVMTVEWSASSEWVLITGGCDGAIRFWDIRHAGCFQVLNQSRTQLGRRPPILKRSSITKESSTKMHAAQKKFVNGSGSGQLPIGRLSSRGPMKQKLQ 364
T++ IDTGLFVTGSYDH++NVWDTNTTQVVVNFKMP K+ + M + CDIASGAFAHTLSGHRDGVMTVEWS SSEWVLITGGCDGAIRFWDIR AGCFQVL+QS+TQLGRRPPILKRS ITK+SS K+ AQKK NGSG Q PIGR+ S+GPMKQ+L
Sbjct: 112 TAIWYPIDTGLFVTGSYDHHINVWDTNTTQVVVNFKMPGKVHRIAMSNLSTSHMLIAAGTEDVQVRLCDIASGAFAHTLSGHRDGVMTVEWSNSSEWVLITGGCDGAIRFWDIRRAGCFQVLDQSQTQLGRRPPILKRSMITKDSSAKLRGAQKKHANGSGYKQQPIGRVPSKGPMKQRLH 292
BLAST of Vfaba.Hedin2.R1.3g043480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445K4R3|A0A445K4R3_GLYSO (Interferon-related developmental regulator 1 isoform E OS=Glycine soja OX=3848 GN=D0Y65_013740 PE=4 SV=1) HSP 1 Score: 252.677 bits (644), Expect = 1.387e-77 Identity = 126/179 (70.39%), Postives = 137/179 (76.54%), Query Frame = 0
Query: 205 IDTGLFVTGSYDHYVNVWDTNTTQVVVNFKMPDKLELRMYKFGFVN-------------------CDIASGAFAHTLSGHRDGVMTVEWSASSEWVLITGGCDGAIRFWDIRHAGCFQVLNQSRTQLGRRPPILKRSSITKESSTKMHAAQKKFVNGSGSGQLPIGRLSSRGPMKQKLQ 364
IDTGLFVTGSYDH++NVWDTNTTQVVVNFKMP K+ ++ N CDIASGAFAHTLSGHRDGVMTVEWS SSEWVL+TGGCDGAIRFWDIR AGCFQVL+QSRTQLGRRP IL S ITK+SSTK+ AAQKK NGSGS Q IGR+ S+GPMKQKL
Sbjct: 122 IDTGLFVTGSYDHHINVWDTNTTQVVVNFKMPGKV----HRAAMSNLSTSHMLIAAATEDVQVRLCDIASGAFAHTLSGHRDGVMTVEWSNSSEWVLVTGGCDGAIRFWDIRRAGCFQVLDQSRTQLGRRPTILNHSMITKDSSTKLSAAQKKHANGSGSRQQLIGRVPSKGPMKQKLH 296
BLAST of Vfaba.Hedin2.R1.3g043480.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q93ZG3|ACSA1_ARATH (WD repeat-containing protein ATCSA-1 OS=Arabidopsis thaliana OX=3702 GN=ATCSA-1 PE=1 SV=1) HSP 1 Score: 188.734 bits (478), Expect = 2.523e-54 Identity = 89/135 (65.93%), Postives = 103/135 (76.30%), Query Frame = 0
Query: 205 IDTGLFVTGSYDHYVNVWDTNTTQVVVNFKMPDKL-ELRMYKFGFVN--------------CDIASGAFAHTLSGHRDGVMTVEWSASSEWVLITGGCDGAIRFWDIRHAGCFQVLNQSRTQLGRRPPILKRSSI 324
IDTGLF+TGS+DHY+ VWDTNT Q VV+FKMP K+ M + CDIASGAF+HTLSGHRDGVM+VEWS SSEWVL TGGCDGAIRFWDIR AGCF+VL+QS+TQLG RPPILKR+++
Sbjct: 114 IDTGLFITGSFDHYLKVWDTNTAQAVVDFKMPGKVYRTAMSSMAMSHTLIAAGTEDVQVRLCDIASGAFSHTLSGHRDGVMSVEWSTSSEWVLYTGGCDGAIRFWDIRRAGCFRVLDQSQTQLGFRPPILKRTAV 248
BLAST of Vfaba.Hedin2.R1.3g043480.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9USR0|CKN1_SCHPO (DNA excision repair protein ckn1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ckn1 PE=1 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 1.915e-14 Identity = 39/107 (36.45%), Postives = 55/107 (51.40%), Query Frame = 0
Query: 205 IDTGLFVTGSYDHYVNVWDTNTTQVVVNFKMPDK-------------LELRMYKFGFVN-CDIASGAFAHTLSGHRDGVMTVEWSASSEWVLITGGCDGAIRFWDIR 297
D G+F + S+DH + VWD +T Q F M D L Y+ + CD+ SG++ H+LSGH V+ V+W +E+VL +G DG R WDIR
Sbjct: 114 FDNGIFTSSSFDHTLKVWDVSTLQEAYTFTMEDMIYSHAWSPIASHCLIATAYRSSSIRLCDMQSGSYTHSLSGHTGNVLAVDWCPKNEFVLASGSADGTCRLWDIR 220
BLAST of Vfaba.Hedin2.R1.3g043480.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q5BIM8|ERCC8_BOVIN (DNA excision repair protein ERCC-8 OS=Bos taurus OX=9913 GN=ERCC8 PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 6.292e-14 Identity = 50/164 (30.49%), Postives = 72/164 (43.90%), Query Frame = 0
Query: 160 NASDKAFEVLKEFCCNGTVVEDPELGQVCLLFFMPTNPKTSLDCSIDTGLFVTGSYDHYVNVWDTNTTQV--VVNFK---MPDKLELRMYKFGFVN----------CDIASGAFAHTLSGHRDGVMTVEWSASSEWVLITGGCDGAIRFWDIRHA-GCFQVLNQ 307
N+S + + K C G D V + + P DTG+F + S+D + VWDTNT Q+ V NF+ + K V CD+ SG+ +H L GHR ++ V WS E++L T D + WD+R A GC L+Q
Sbjct: 75 NSSRQPYYTCKAVCSVGRSHPDVHKYSVETVQWYPH----------DTGMFTSSSFDKTLKVWDTNTLQIADVFNFEETVYSHHMSPVATKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYEYILATASADSRAKLWDVRRASGCLITLDQ 228
BLAST of Vfaba.Hedin2.R1.3g043480.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q8CFD5|ERCC8_MOUSE (DNA excision repair protein ERCC-8 OS=Mus musculus OX=10090 GN=Ercc8 PE=1 SV=2) HSP 1 Score: 75.8702 bits (185), Expect = 6.527e-14 Identity = 41/118 (34.75%), Postives = 59/118 (50.00%), Query Frame = 0
Query: 206 DTGLFVTGSYDHYVNVWDTNTTQV--VVNFK---MPDKLELRMYKFGFVN----------CDIASGAFAHTLSGHRDGVMTVEWSASSEWVLITGGCDGAIRFWDIRHA-GCFQVLNQ 307
DTG+F + S+D + VWDTNT Q V NF+ + K V CD+ SG+ +H L GHR ++ V WS +++L T D ++ WD+R A GC L+Q
Sbjct: 111 DTGMFTSSSFDKTLKVWDTNTLQAADVFNFEETVYSHHMSPAATKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRHDYILATASADSRVKLWDVRRASGCLLTLDQ 228
BLAST of Vfaba.Hedin2.R1.3g043480.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q13216|ERCC8_HUMAN (DNA excision repair protein ERCC-8 OS=Homo sapiens OX=9606 GN=ERCC8 PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 2.009e-13 Identity = 49/164 (29.88%), Postives = 73/164 (44.51%), Query Frame = 0
Query: 160 NASDKAFEVLKEFCCNGTVVEDPELGQVCLLFFMPTNPKTSLDCSIDTGLFVTGSYDHYVNVWDTNTTQV--VVNFK---MPDKLELRMYKFGFVN----------CDIASGAFAHTLSGHRDGVMTVEWSASSEWVLITGGCDGAIRFWDIRHA-GCFQVLNQ 307
N+S +++ K C G D V + + P DTG+F + S+D + VWDTNT Q V NF+ + K V CD+ SG+ +H L GHR ++ V WS +++L T D ++ WD+R A GC L+Q
Sbjct: 75 NSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH----------DTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQ 228
BLAST of Vfaba.Hedin2.R1.3g043480.1 vs. Araport11
Match: AT1G27840.1 (| Transducin/WD40 repeat-like superfamily protein | Chr1:9693332-9696257 REVERSE LENGTH=450 | 201606) HSP 1 Score: 188.734 bits (478), Expect = 2.581e-55 Identity = 89/135 (65.93%), Postives = 103/135 (76.30%), Query Frame = 0
Query: 205 IDTGLFVTGSYDHYVNVWDTNTTQVVVNFKMPDKL-ELRMYKFGFVN--------------CDIASGAFAHTLSGHRDGVMTVEWSASSEWVLITGGCDGAIRFWDIRHAGCFQVLNQSRTQLGRRPPILKRSSI 324
IDTGLF+TGS+DHY+ VWDTNT Q VV+FKMP K+ M + CDIASGAF+HTLSGHRDGVM+VEWS SSEWVL TGGCDGAIRFWDIR AGCF+VL+QS+TQLG RPPILKR+++
Sbjct: 114 IDTGLFITGSFDHYLKVWDTNTAQAVVDFKMPGKVYRTAMSSMAMSHTLIAAGTEDVQVRLCDIASGAFSHTLSGHRDGVMSVEWSTSSEWVLYTGGCDGAIRFWDIRRAGCFRVLDQSQTQLGFRPPILKRTAV 248
BLAST of Vfaba.Hedin2.R1.3g043480.1 vs. Araport11
Match: AT1G27840.3 (| Transducin/WD40 repeat-like superfamily protein | Chr1:9693332-9696257 REVERSE LENGTH=451 | 201606) HSP 1 Score: 188.348 bits (477), Expect = 2.870e-55 Identity = 89/135 (65.93%), Postives = 103/135 (76.30%), Query Frame = 0
Query: 205 IDTGLFVTGSYDHYVNVWDTNTTQVVVNFKMPDKL-ELRMYKFGFVN--------------CDIASGAFAHTLSGHRDGVMTVEWSASSEWVLITGGCDGAIRFWDIRHAGCFQVLNQSRTQLGRRPPILKRSSI 324
IDTGLF+TGS+DHY+ VWDTNT Q VV+FKMP K+ M + CDIASGAF+HTLSGHRDGVM+VEWS SSEWVL TGGCDGAIRFWDIR AGCF+VL+QS+TQLG RPPILKR+++
Sbjct: 114 IDTGLFITGSFDHYLKVWDTNTAQAVVDFKMPGKVYRTAMSSMAMSHTLIAAGTEDVQVRLCDIASGAFSHTLSGHRDGVMSVEWSTSSEWVLYTGGCDGAIRFWDIRRAGCFRVLDQSQTQLGFRPPILKRTAV 248
BLAST of Vfaba.Hedin2.R1.3g043480.1 vs. Araport11
Match: AT1G19750.1 (| Transducin/WD40 repeat-like superfamily protein | Chr1:6826997-6830061 FORWARD LENGTH=450 | 201606) HSP 1 Score: 187.963 bits (476), Expect = 4.277e-55 Identity = 93/148 (62.84%), Postives = 109/148 (73.65%), Query Frame = 0
Query: 205 IDTGLFVTGSYDHYVNVWDTNTTQVVVNFKMPDKL-ELRMYKFGFVN--------------CDIASGAFAHTLSGHRDGVMTVEWSASSEWVLITGGCDGAIRFWDIRHAGCFQVLNQSRTQLGRRPPILKRSSITKESSTKMHAAQK 337
IDTG+F+TGS+DHYV VWDTNT+QVVV+FKMP K+ M + CDIASGAF+HTLSGHRDGVM+VEWS SSEWVL TGGCDGAIRFWDIR AGCF+VL+ S+TQLG RPPILKR ++ S+K +A K
Sbjct: 114 IDTGMFITGSFDHYVKVWDTNTSQVVVDFKMPGKVYRTAMSSMAMSHTLIAAGTDDVQVRLCDIASGAFSHTLSGHRDGVMSVEWSTSSEWVLYTGGCDGAIRFWDIRRAGCFRVLDNSQTQLGVRPPILKRPAV----SSKFFSAAK 257
BLAST of Vfaba.Hedin2.R1.3g043480.1 vs. Araport11
Match: AT1G19750.2 (| Transducin/WD40 repeat-like superfamily protein | Chr1:6827518-6830061 FORWARD LENGTH=333 | 201606) HSP 1 Score: 179.874 bits (455), Expect = 3.257e-53 Identity = 89/144 (61.81%), Postives = 105/144 (72.92%), Query Frame = 0
Query: 209 LFVTGSYDHYVNVWDTNTTQVVVNFKMPDKL-ELRMYKFGFVN--------------CDIASGAFAHTLSGHRDGVMTVEWSASSEWVLITGGCDGAIRFWDIRHAGCFQVLNQSRTQLGRRPPILKRSSITKESSTKMHAAQK 337
+F+TGS+DHYV VWDTNT+QVVV+FKMP K+ M + CDIASGAF+HTLSGHRDGVM+VEWS SSEWVL TGGCDGAIRFWDIR AGCF+VL+ S+TQLG RPPILKR ++ S+K +A K
Sbjct: 1 MFITGSFDHYVKVWDTNTSQVVVDFKMPGKVYRTAMSSMAMSHTLIAAGTDDVQVRLCDIASGAFSHTLSGHRDGVMSVEWSTSSEWVLYTGGCDGAIRFWDIRRAGCFRVLDNSQTQLGVRPPILKRPAV----SSKFFSAAK 140
BLAST of Vfaba.Hedin2.R1.3g043480.1 vs. Araport11
Match: AT1G27840.2 (| Transducin/WD40 repeat-like superfamily protein | Chr1:9693332-9696257 REVERSE LENGTH=393 | 201606) HSP 1 Score: 147.132 bits (370), Expect = 3.946e-40 Identity = 77/144 (53.47%), Postives = 95/144 (65.97%), Query Frame = 0
Query: 200 SLDCSIDTGLFV-TGSYDHYVNVWDTNTT---QVVVNFKMPDKL-ELRMYKFGFVN--------------CDIASGAFAHTLSGHRDGVMTVEWSASSEWVLITGGCDGAIRFWDIRHAGCFQVLNQSRTQLGRRPPILKRSSI 324
SL + G ++ +G+ D V+D + VV+FKMP K+ M + CDIASGAF+HTLSGHRDGVM+VEWS SSEWVL TGGCDGAIRFWDIR AGCF+VL+QS+TQLG RPPILKR+++
Sbjct: 48 SLQVDLTEGRYLLSGAADGSAAVFDVQRATDYEAVVDFKMPGKVYRTAMSSMAMSHTLIAAGTEDVQVRLCDIASGAFSHTLSGHRDGVMSVEWSTSSEWVLYTGGCDGAIRFWDIRRAGCFRVLDQSQTQLGFRPPILKRTAV 191 The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.3g043480.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL) Total hits: 10
BLAST of Vfaba.Hedin2.R1.3g043480.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot) Total hits: 5
BLAST of Vfaba.Hedin2.R1.3g043480.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11) Total hits: 5
InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vfaba.Hedin2.R1.3g043480.1_vfh_v1 ID=Vfaba.Hedin2.R1.3g043480.1_vfh_v1; Name=Vfaba.Hedin2.R1.3g043480.1; organism=Vicia faba; type=mRNA; length=1140bpback to top protein sequence of Vfaba.Hedin2.R1.3g043480.1_vfh_v1 >Vfaba.Hedin2.R1.3g043480.1_vfh_v1 ID=Vfaba.Hedin2.R1.3g043480.1_vfh_v1; Name=Vfaba.Hedin2.R1.3g043480.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=379bpback to top mRNA from alignment at chr3:262631848..262635658+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>Vfaba.Hedin2.R1.3g043480.1_vfh_v1 ID=Vfaba.Hedin2.R1.3g043480.1_vfh_v1; Name=Vfaba.Hedin2.R1.3g043480.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr3:262631848..262635658+ (Vicia fababack to top Annotated Terms
The
following terms have been associated with
this mRNA:
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