Vfaba.Hedin2.R1.3g044760.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Vfaba.Hedin2.R1.3g044760.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3R1S3|A0A0S3R1S3_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.01G220100 PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 3.387e-19 Identity = 44/67 (65.67%), Postives = 52/67 (77.61%), Query Frame = 0 Query: 31 IPYLRPTEYERSRLSRNLRIVNRAYGGVLSGRAVRERMIRAFLVEEKNFEE---SFEDTKDKRNLAT 94 IP+LRPTEY+RSRLSRN R VNRAYGGVLSG AVRER+IRAFLVEE+ + + KDK+ L + Sbjct: 54 IPHLRPTEYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKDKQALKS 120
BLAST of Vfaba.Hedin2.R1.3g044760.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9TLE2|A0A0L9TLE2_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan01g096800 PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 3.387e-19 Identity = 44/67 (65.67%), Postives = 52/67 (77.61%), Query Frame = 0 Query: 31 IPYLRPTEYERSRLSRNLRIVNRAYGGVLSGRAVRERMIRAFLVEEKNFEE---SFEDTKDKRNLAT 94 IP+LRPTEY+RSRLSRN R VNRAYGGVLSG AVRER+IRAFLVEE+ + + KDK+ L + Sbjct: 54 IPHLRPTEYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKDKQALKS 120
BLAST of Vfaba.Hedin2.R1.3g044760.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0K9PKS7|A0A0K9PKS7_ZOSMR (60S ribosomal protein L34 OS=Zostera marina OX=29655 GN=ZOSMA_20G01160 PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 6.045e-19 Identity = 43/66 (65.15%), Postives = 52/66 (78.79%), Query Frame = 0 Query: 31 IPYLRPTEYERSRLSRNLRIVNRAYGGVLSGRAVRERMIRAFLVEEKNFEE---SFEDTKDKRNLA 93 IP+LRPT+Y+RSRLSRN R VNRAYGGVLSG AVRER+IRAFL+EE+ + + TKDK+ A Sbjct: 54 IPHLRPTQYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLIEEQKIVKKVLKIQKTKDKQAKA 119
BLAST of Vfaba.Hedin2.R1.3g044760.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S4CM46|A0A1S4CM46_TOBAC (60S ribosomal protein L34-like OS=Nicotiana tabacum OX=4097 GN=LOC107820542 PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 7.261e-19 Identity = 44/66 (66.67%), Postives = 52/66 (78.79%), Query Frame = 0 Query: 30 RIPYLRPTEYERSRLSRNLRIVNRAYGGVLSGRAVRERMIRAFLVEEKNF-EESFEDTKDKRNLAT 94 +IP+LRPTEY+RSRLSRN R VNRAYGGVLSG AVRER+IRAFLVEE+ ++ + K K LA Sbjct: 16 QIPHLRPTEYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAA 81
BLAST of Vfaba.Hedin2.R1.3g044760.1 vs. UniProtKB/TrEMBL
Match: tr|A0A200RAS8|A0A200RAS8_9MAGN (Ribosomal protein L34Ae OS=Macleaya cordata OX=56857 GN=BVC80_1685g3 PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.075e-18 Identity = 45/69 (65.22%), Postives = 51/69 (73.91%), Query Frame = 0 Query: 31 IPYLRPTEYERSRLSRNLRIVNRAYGGVLSGRAVRERMIRAFLVEEKNFEESFEDTKDKRNLATHKPRE 99 IP+LRPTEY+RSRLSRN R VNRAYGGVLSG AVRER+IRAFLVEE+ DK+ L K +E Sbjct: 67 IPHLRPTEYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKI--------DKKVLKIQKAKE 127
BLAST of Vfaba.Hedin2.R1.3g044760.1 vs. UniProtKB/TrEMBL
Match: tr|A0A5J5AGW1|A0A5J5AGW1_9ASTE (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_033773 PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 1.339e-18 Identity = 43/63 (68.25%), Postives = 51/63 (80.95%), Query Frame = 0 Query: 31 IPYLRPTEYERSRLSRNLRIVNRAYGGVLSGRAVRERMIRAFLVEEKNFEE---SFEDTKDKR 90 IP+LRPTEY+RSRLSRN R VNRAYGGVLSG AVRER+IRAFLVEE+ + + TK+K+ Sbjct: 54 IPHLRPTEYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKTKEKQ 116
BLAST of Vfaba.Hedin2.R1.3g044760.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1U7XFS1|A0A1U7XFS1_NICSY (60S ribosomal protein L34-like OS=Nicotiana sylvestris OX=4096 GN=LOC104233587 PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 1.413e-18 Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 0 Query: 31 IPYLRPTEYERSRLSRNLRIVNRAYGGVLSGRAVRERMIRAFLVEEKNF-EESFEDTKDKRNLAT 94 IP+LRPTEY+RSRLSRN R VNRAYGGVLSG AVRER+IRAFLVEE+ ++ + K K LA+ Sbjct: 54 IPHLRPTEYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAS 118
BLAST of Vfaba.Hedin2.R1.3g044760.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1J6KSN1|A0A1J6KSN1_NICAT (60s ribosomal protein l34 OS=Nicotiana attenuata OX=49451 GN=RPL34_0 PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 1.413e-18 Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 0 Query: 31 IPYLRPTEYERSRLSRNLRIVNRAYGGVLSGRAVRERMIRAFLVEEKNF-EESFEDTKDKRNLAT 94 IP+LRPTEY+RSRLSRN R VNRAYGGVLSG AVRER+IRAFLVEE+ ++ + K K LA+ Sbjct: 54 IPHLRPTEYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAS 118
BLAST of Vfaba.Hedin2.R1.3g044760.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3XUR7|A0A1S3XUR7_TOBAC (60S ribosomal protein L34-like OS=Nicotiana tabacum OX=4097 GN=LOC107768952 PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 1.413e-18 Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 0 Query: 31 IPYLRPTEYERSRLSRNLRIVNRAYGGVLSGRAVRERMIRAFLVEEKNF-EESFEDTKDKRNLAT 94 IP+LRPTEY+RSRLSRN R VNRAYGGVLSG AVRER+IRAFLVEE+ ++ + K K LA+ Sbjct: 54 IPHLRPTEYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAS 118
BLAST of Vfaba.Hedin2.R1.3g044760.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6P9EF84|A0A6P9EF84_JUGRE (60S ribosomal protein L34 OS=Juglans regia OX=51240 GN=LOC109013174 PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 1.680e-18 Identity = 43/63 (68.25%), Postives = 51/63 (80.95%), Query Frame = 0 Query: 31 IPYLRPTEYERSRLSRNLRIVNRAYGGVLSGRAVRERMIRAFLVEEKNFEE---SFEDTKDKR 90 IP+LRPTEY+RSRLSRN R VNRAYGGVLSG AVRER+IRAFLVEE+ + + TK+K+ Sbjct: 54 IPHLRPTEYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKTKEKQ 116
BLAST of Vfaba.Hedin2.R1.3g044760.1 vs. UniProtKB/Swiss-Prot
Match: sp|P40590|RL34_PEA (60S ribosomal protein L34 OS=Pisum sativum OX=3888 GN=RPL34 PE=2 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 5.410e-21 Identity = 43/63 (68.25%), Postives = 51/63 (80.95%), Query Frame = 0 Query: 31 IPYLRPTEYERSRLSRNLRIVNRAYGGVLSGRAVRERMIRAFLVEEKNFEE---SFEDTKDKR 90 IP+LRPTEY+RSRLSRN R VNRAYGGVLSG AVRER+IRAFLVEE+ + + TK+K+ Sbjct: 54 IPHLRPTEYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKTKEKQ 116
BLAST of Vfaba.Hedin2.R1.3g044760.1 vs. UniProtKB/Swiss-Prot
Match: sp|P41098|RL34_TOBAC (60S ribosomal protein L34 OS=Nicotiana tabacum OX=4097 GN=RPL34 PE=2 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 5.469e-21 Identity = 44/65 (67.69%), Postives = 51/65 (78.46%), Query Frame = 0 Query: 31 IPYLRPTEYERSRLSRNLRIVNRAYGGVLSGRAVRERMIRAFLVEEKNF-EESFEDTKDKRNLAT 94 IP+LRPTEY+RSRLSRN R VNRAYGGVLSG AVRER+IRAFLVEE+ ++ + K K LA Sbjct: 54 IPHLRPTEYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAA 118
BLAST of Vfaba.Hedin2.R1.3g044760.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9FE65|RL342_ARATH (60S ribosomal protein L34-2 OS=Arabidopsis thaliana OX=3702 GN=RPL34B PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.658e-20 Identity = 40/49 (81.63%), Postives = 44/49 (89.80%), Query Frame = 0 Query: 31 IPYLRPTEYERSRLSRNLRIVNRAYGGVLSGRAVRERMIRAFLVEEKNF 79 IP+LRPTEY+RSRLSRN R VNRAYGGVLSG AVRER+IRAFLVEE+ Sbjct: 54 IPHLRPTEYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKI 102
BLAST of Vfaba.Hedin2.R1.3g044760.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q42351|RL341_ARATH (60S ribosomal protein L34-1 OS=Arabidopsis thaliana OX=3702 GN=RPL34A PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 6.364e-20 Identity = 39/49 (79.59%), Postives = 44/49 (89.80%), Query Frame = 0 Query: 31 IPYLRPTEYERSRLSRNLRIVNRAYGGVLSGRAVRERMIRAFLVEEKNF 79 IP+LRP+EY+RSRLSRN R VNRAYGGVLSG AVRER+IRAFLVEE+ Sbjct: 54 IPHLRPSEYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKI 102
BLAST of Vfaba.Hedin2.R1.3g044760.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9LJW6|RL343_ARATH (60S ribosomal protein L34-3 OS=Arabidopsis thaliana OX=3702 GN=RPL34C PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 8.775e-19 Identity = 37/49 (75.51%), Postives = 43/49 (87.76%), Query Frame = 0 Query: 31 IPYLRPTEYERSRLSRNLRIVNRAYGGVLSGRAVRERMIRAFLVEEKNF 79 IP+LRP EY+RSRL+RN R VNRAYGGVLSG AVRER++RAFLVEE+ Sbjct: 54 IPHLRPAEYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAFLVEEQKI 102
BLAST of Vfaba.Hedin2.R1.3g044760.1 vs. UniProtKB/Swiss-Prot
Match: sp|O42846|RL34A_SCHPO (60S ribosomal protein L34-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpl3401 PE=3 SV=1) HSP 1 Score: 56.225 bits (134), Expect = 6.375e-10 Identity = 27/49 (55.10%), Postives = 36/49 (73.47%), Query Frame = 0 Query: 31 IPYLRPTEYERSRLSRNLRIVNRAYGGVLSGRAVRERMIRAFLVEEKNF 79 IP LRP E+ +RLS N + V RAYGG LS AV++R++RAFL+EE+ Sbjct: 54 IPALRPREF--ARLSHNKKTVQRAYGGCLSANAVKDRIVRAFLIEEQKI 100
BLAST of Vfaba.Hedin2.R1.3g044760.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9URT8|RL34B_SCHPO (60S ribosomal protein L34-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpl3402 PE=1 SV=1) HSP 1 Score: 55.8398 bits (133), Expect = 9.230e-10 Identity = 27/49 (55.10%), Postives = 36/49 (73.47%), Query Frame = 0 Query: 31 IPYLRPTEYERSRLSRNLRIVNRAYGGVLSGRAVRERMIRAFLVEEKNF 79 IP LRP E+ +RLS N + V RAYGG LS AV++R++RAFL+EE+ Sbjct: 54 IPALRPREF--ARLSHNQKKVQRAYGGCLSANAVKDRIVRAFLIEEQKI 100
BLAST of Vfaba.Hedin2.R1.3g044760.1 vs. Araport11
Match: AT1G69620.1 (| ribosomal protein L34 | Chr1:26189900-26191081 FORWARD LENGTH=119 | 201606) HSP 1 Score: 83.9593 bits (206), Expect = 1.696e-21 Identity = 40/49 (81.63%), Postives = 44/49 (89.80%), Query Frame = 0 Query: 31 IPYLRPTEYERSRLSRNLRIVNRAYGGVLSGRAVRERMIRAFLVEEKNF 79 IP+LRPTEY+RSRLSRN R VNRAYGGVLSG AVRER+IRAFLVEE+ Sbjct: 54 IPHLRPTEYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKI 102
BLAST of Vfaba.Hedin2.R1.3g044760.1 vs. Araport11
Match: AT1G26880.1 (| Ribosomal protein L34e superfamily protein | Chr1:9315640-9316681 REVERSE LENGTH=120 | 201606) HSP 1 Score: 82.4185 bits (202), Expect = 6.511e-21 Identity = 39/49 (79.59%), Postives = 44/49 (89.80%), Query Frame = 0 Query: 31 IPYLRPTEYERSRLSRNLRIVNRAYGGVLSGRAVRERMIRAFLVEEKNF 79 IP+LRP+EY+RSRLSRN R VNRAYGGVLSG AVRER+IRAFLVEE+ Sbjct: 54 IPHLRPSEYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKI 102
BLAST of Vfaba.Hedin2.R1.3g044760.1 vs. Araport11
Match: AT3G28900.1 (| Ribosomal protein L34e superfamily protein | Chr3:10902864-10904415 REVERSE LENGTH=120 | 201606) HSP 1 Score: 79.7221 bits (195), Expect = 8.977e-20 Identity = 37/49 (75.51%), Postives = 43/49 (87.76%), Query Frame = 0 Query: 31 IPYLRPTEYERSRLSRNLRIVNRAYGGVLSGRAVRERMIRAFLVEEKNF 79 IP+LRP EY+RSRL+RN R VNRAYGGVLSG AVRER++RAFLVEE+ Sbjct: 54 IPHLRPAEYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAFLVEEQKI 102
BLAST of Vfaba.Hedin2.R1.3g044760.1 vs. Araport11
Match: AT1G26880.2 (| Ribosomal protein L34e superfamily protein | Chr1:9315798-9316681 REVERSE LENGTH=96 | 201606) HSP 1 Score: 66.2402 bits (160), Expect = 7.737e-15 Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 0 Query: 31 IPYLRPTEYERSRLSRNLRIVNRAYGGVLSGRAVRERMI 69 IP+LRP+EY+RSRLSRN R VNRAYGGVLSG AVRER + Sbjct: 54 IPHLRPSEYKRSRLSRNRRTVNRAYGGVLSGSAVRERFV 92 The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.3g044760.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL) Total hits: 10
BLAST of Vfaba.Hedin2.R1.3g044760.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot) Total hits: 7
BLAST of Vfaba.Hedin2.R1.3g044760.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11) Total hits: 4
InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vfaba.Hedin2.R1.3g044760.1_vfh_v1 ID=Vfaba.Hedin2.R1.3g044760.1_vfh_v1; Name=Vfaba.Hedin2.R1.3g044760.1; organism=Vicia faba; type=mRNA; length=447bpback to top protein sequence of Vfaba.Hedin2.R1.3g044760.1_vfh_v1 >Vfaba.Hedin2.R1.3g044760.1_vfh_v1 ID=Vfaba.Hedin2.R1.3g044760.1_vfh_v1; Name=Vfaba.Hedin2.R1.3g044760.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=148bpback to top mRNA from alignment at chr3:267419681..267420429+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>Vfaba.Hedin2.R1.3g044760.1_vfh_v1 ID=Vfaba.Hedin2.R1.3g044760.1_vfh_v1; Name=Vfaba.Hedin2.R1.3g044760.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr3:267419681..267420429+ (Vicia fababack to top Annotated Terms
The
following terms have been associated with
this mRNA:
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