Vfaba.Hedin2.R1.3g056360.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Vfaba.Hedin2.R1.3g056360.1 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6N2R6|A0A4D6N2R6_VIGUN (RmlC-like jelly roll fold OS=Vigna unguiculata OX=3917 GN=DEO72_LG9g1823 PE=4 SV=1) HSP 1 Score: 196.052 bits (497), Expect = 3.652e-63 Identity = 93/103 (90.29%), Postives = 97/103 (94.17%), Query Frame = 0 Query: 1 MASDSKSNLKITIQSNPPESTLAELNIKCWPKWGCSAGKYQLKFDAEETCYLLKGKVKAYTKGSSEYVEFGAGDLVTIPKGLSCTWDVSVAVDKHYKFEASSS 103 MASDS SNL+ITI+SNPPES LAELNIKCWPKWGCS GKYQLKFDAEETCYLLKGKVKAY KGSSE+VEFG GDLVTIPKGL CTWDVSVAVDKHYKFE+SSS Sbjct: 1 MASDSNSNLRITIESNPPESRLAELNIKCWPKWGCSPGKYQLKFDAEETCYLLKGKVKAYPKGSSEFVEFGVGDLVTIPKGLHCTWDVSVAVDKHYKFESSSS 103
BLAST of Vfaba.Hedin2.R1.3g056360.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3SRG5|A0A0S3SRG5_PHAAN (Cupin_3 domain-containing protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.08G214000 PE=4 SV=1) HSP 1 Score: 195.282 bits (495), Expect = 9.882e-63 Identity = 92/104 (88.46%), Postives = 97/104 (93.27%), Query Frame = 0 Query: 1 MASDSKSNLKITIQSNPPESTLAELNIKCWPKWGCSAGKYQLKFDAEETCYLLKGKVKAYTKGSSEYVEFGAGDLVTIPKGLSCTWDVSVAVDKHYKFEASSSS 104 MASDS SNL+ITI+SNPPES LAELNIKCWPKWGCS GKYQLKFDAEETCYLLKGKVKAY KGSSE+VEFG GDLVTIPKGL CTWDVSVAVDKHYKFE++ SS Sbjct: 1 MASDSNSNLRITIESNPPESRLAELNIKCWPKWGCSPGKYQLKFDAEETCYLLKGKVKAYPKGSSEFVEFGVGDLVTIPKGLHCTWDVSVAVDKHYKFESTPSS 104
BLAST of Vfaba.Hedin2.R1.3g056360.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9TXR2|A0A0L9TXR2_PHAAN (Cupin_3 domain-containing protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan02g144600 PE=4 SV=1) HSP 1 Score: 195.282 bits (495), Expect = 9.882e-63 Identity = 92/104 (88.46%), Postives = 97/104 (93.27%), Query Frame = 0 Query: 1 MASDSKSNLKITIQSNPPESTLAELNIKCWPKWGCSAGKYQLKFDAEETCYLLKGKVKAYTKGSSEYVEFGAGDLVTIPKGLSCTWDVSVAVDKHYKFEASSSS 104 MASDS SNL+ITI+SNPPES LAELNIKCWPKWGCS GKYQLKFDAEETCYLLKGKVKAY KGSSE+VEFG GDLVTIPKGL CTWDVSVAVDKHYKFE++ SS Sbjct: 1 MASDSNSNLRITIESNPPESRLAELNIKCWPKWGCSPGKYQLKFDAEETCYLLKGKVKAYPKGSSEFVEFGVGDLVTIPKGLHCTWDVSVAVDKHYKFESTPSS 104
BLAST of Vfaba.Hedin2.R1.3g056360.1 vs. UniProtKB/TrEMBL
Match: tr|A0A072VLH1|A0A072VLH1_MEDTR (Putative rmlC-like jelly roll protein OS=Medicago truncatula OX=3880 GN=25484187 PE=4 SV=1) HSP 1 Score: 194.512 bits (493), Expect = 1.625e-62 Identity = 93/103 (90.29%), Postives = 98/103 (95.15%), Query Frame = 0 Query: 1 MASDSKSNLKITIQSNPPESTLAELNIKCWPKWGCSAGKYQLKFDAEETCYLLKGKVKAYTKGSSEYVEFGAGDLVTIPKGLSCTWDVSVAVDKHYKFEASSS 103 MASDS SNL+ITI+SNP E LAELNIKCWPKWGCS GKYQLKFDAEETCYLLKGKVKAYTKGSSE+VEFGAGDLVTIPKGLSCTWDVS+AVDK+YKFEASSS Sbjct: 1 MASDSNSNLRITIESNPSEPRLAELNIKCWPKWGCSPGKYQLKFDAEETCYLLKGKVKAYTKGSSEFVEFGAGDLVTIPKGLSCTWDVSIAVDKYYKFEASSS 103
BLAST of Vfaba.Hedin2.R1.3g056360.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2XVB7|A0A1S2XVB7_CICAR (uncharacterized protein LOC101511860 OS=Cicer arietinum OX=3827 GN=LOC101511860 PE=4 SV=1) HSP 1 Score: 194.512 bits (493), Expect = 2.202e-62 Identity = 93/104 (89.42%), Postives = 99/104 (95.19%), Query Frame = 0 Query: 1 MASDSKSNLKITIQSNPPESTLAELNIKCWPKWGCSAGKYQLKFDAEETCYLLKGKVKAYTKGSSEYVEFGAGDLVTIPKGLSCTWDVSVAVDKHYKFEASSSS 104 MA DS SNL+I+I+SNP ES LAELNIKCWPKWGCS GKYQLKFDAEETCYLLKGKVKAYTKGSS++VEFGAGDLVTIPKGLSCTWDVSVAVDK+YKFEASSSS Sbjct: 1 MAEDSNSNLRISIESNPTESRLAELNIKCWPKWGCSPGKYQLKFDAEETCYLLKGKVKAYTKGSSDFVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFEASSSS 104
BLAST of Vfaba.Hedin2.R1.3g056360.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3V4E6|A0A1S3V4E6_VIGRR (uncharacterized protein LOC106771538 OS=Vigna radiata var. radiata OX=3916 GN=LOC106771538 PE=4 SV=1) HSP 1 Score: 193.741 bits (491), Expect = 3.530e-62 Identity = 91/104 (87.50%), Postives = 96/104 (92.31%), Query Frame = 0 Query: 1 MASDSKSNLKITIQSNPPESTLAELNIKCWPKWGCSAGKYQLKFDAEETCYLLKGKVKAYTKGSSEYVEFGAGDLVTIPKGLSCTWDVSVAVDKHYKFEASSSS 104 MASDS SNL+ITI+ NPPES LAELNIKCWPKWGCS GKYQLKFDAEETCYLLKGKVKAY KGSSE+VEFG GDLVTIPKGL CTWDVSVAVDKHYKFE++ SS Sbjct: 1 MASDSNSNLRITIERNPPESRLAELNIKCWPKWGCSPGKYQLKFDAEETCYLLKGKVKAYPKGSSEFVEFGVGDLVTIPKGLHCTWDVSVAVDKHYKFESTPSS 104
BLAST of Vfaba.Hedin2.R1.3g056360.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6MR10|A0A2Z6MR10_TRISU (Cupin_3 domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_29840 PE=4 SV=1) HSP 1 Score: 191.815 bits (486), Expect = 2.072e-61 Identity = 92/104 (88.46%), Postives = 97/104 (93.27%), Query Frame = 0 Query: 1 MASDSKSNLKITIQSNPPESTLAELNIKCWPKWGCSAGKYQLKFDAEETCYLLKGKVKAYTKGSSEYVEFGAGDLVTIPKGLSCTWDVSVAVDKHYKFEASSSS 104 MASDS SNL+I I+SNP ES LAELNIKCWPKWGCS GKYQLKFDAEETCYLLKGKVK YTK SSE+VEFGAGDLVTIPKGLSCTWDVS+AVDK+YKFEASSSS Sbjct: 1 MASDSNSNLRINIESNPSESRLAELNIKCWPKWGCSPGKYQLKFDAEETCYLLKGKVKVYTKESSEFVEFGAGDLVTIPKGLSCTWDVSIAVDKYYKFEASSSS 104
BLAST of Vfaba.Hedin2.R1.3g056360.1 vs. UniProtKB/TrEMBL
Match: tr|V7BIR3|V7BIR3_PHAVU (Cupin_3 domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_007G154400g PE=4 SV=1) HSP 1 Score: 191.43 bits (485), Expect = 3.739e-61 Identity = 90/104 (86.54%), Postives = 97/104 (93.27%), Query Frame = 0 Query: 1 MASDSKSNLKITIQSNPPESTLAELNIKCWPKWGCSAGKYQLKFDAEETCYLLKGKVKAYTKGSSEYVEFGAGDLVTIPKGLSCTWDVSVAVDKHYKFEASSSS 104 MASDS SNL+ITI+SNPPES LAELNIKCWPKWGCS GKYQLKFDAEETCYLLKGKVK Y KGSSE+VEFG GDLVTIPKGL CTWDVSVAVDK+YKFE+++SS Sbjct: 1 MASDSSSNLRITIESNPPESRLAELNIKCWPKWGCSPGKYQLKFDAEETCYLLKGKVKVYPKGSSEFVEFGVGDLVTIPKGLHCTWDVSVAVDKYYKFESTASS 104
BLAST of Vfaba.Hedin2.R1.3g056360.1 vs. UniProtKB/TrEMBL
Match: tr|I3S412|I3S412_MEDTR (Cupin_3 domain-containing protein OS=Medicago truncatula OX=3880 PE=2 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 6.569e-61 Identity = 92/103 (89.32%), Postives = 97/103 (94.17%), Query Frame = 0 Query: 1 MASDSKSNLKITIQSNPPESTLAELNIKCWPKWGCSAGKYQLKFDAEETCYLLKGKVKAYTKGSSEYVEFGAGDLVTIPKGLSCTWDVSVAVDKHYKFEASSS 103 MASDS SNL+ITI+SN E LAELNIKCWPKWGCS GKYQLKFDAEETCYLLKGKVKAYTKGSSE+VEFGAGDLVTIPKGLSCTWDVS+AVDK+YKFEASSS Sbjct: 1 MASDSNSNLRITIESNFSEPRLAELNIKCWPKWGCSPGKYQLKFDAEETCYLLKGKVKAYTKGSSEFVEFGAGDLVTIPKGLSCTWDVSIAVDKYYKFEASSS 103
BLAST of Vfaba.Hedin2.R1.3g056360.1 vs. UniProtKB/TrEMBL
Match: tr|C6T203|C6T203_SOYBN (Cupin_3 domain-containing protein OS=Glycine max OX=3847 GN=100500522 PE=2 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 7.242e-61 Identity = 91/104 (87.50%), Postives = 98/104 (94.23%), Query Frame = 0 Query: 1 MASDSKSNLKITIQSNPPESTLAELNIKCWPKWGCSAGKYQLKFDAEETCYLLKGKVKAYTKGSSEYVEFGAGDLVTIPKGLSCTWDVSVAVDKHYKFEASSSS 104 MASDS SNL+ITI+SNPPES LAELNIK WPKWGCS GKYQLKFDAEETCYLLKGKVKAY KGSSE+VEFGAGDLVTIPKGL+CTWDVSVAVDK+YKFE+ +SS Sbjct: 1 MASDSNSNLRITIESNPPESRLAELNIKYWPKWGCSPGKYQLKFDAEETCYLLKGKVKAYPKGSSEFVEFGAGDLVTIPKGLNCTWDVSVAVDKYYKFESPNSS 104
BLAST of Vfaba.Hedin2.R1.3g056360.1 vs. Araport11
Match: AT3G04300.1 (| RmlC-like cupins superfamily protein | Chr3:1140318-1140723 FORWARD LENGTH=96 | 201606) HSP 1 Score: 138.658 bits (348), Expect = 5.342e-44 Identity = 61/95 (64.21%), Postives = 74/95 (77.89%), Query Frame = 0 Query: 9 LKITIQSNPPESTLAELNIKCWPKWGCSAGKYQLKFDAEETCYLLKGKVKAYTKGSSEYVEFGAGDLVTIPKGLSCTWDVSVAVDKHYKFEASSS 103 + I I++NP L++L + WPKW C GKY L F+ ETCYL+KGKVK Y KGSSE+VEFGAGDLVTIPKGLSCTWDVS+ +DKHYKF+ +S Sbjct: 1 MNIVIENNPSSRRLSDLGVMSWPKWSCQPGKYALVFEERETCYLVKGKVKVYPKGSSEFVEFGAGDLVTIPKGLSCTWDVSLFIDKHYKFDPPTS 95
BLAST of Vfaba.Hedin2.R1.3g056360.1 vs. Araport11
Match: AT4G10300.1 (| RmlC-like cupins superfamily protein | Chr4:6384564-6385946 FORWARD LENGTH=134 | 201606) HSP 1 Score: 133.265 bits (334), Expect = 2.282e-41 Identity = 59/99 (59.60%), Postives = 72/99 (72.73%), Query Frame = 0 Query: 1 MASDSKSNLKITIQSNPPESTLAELNIKCWPKWGCSAGKYQLKFDAEETCYLLKGKVKAYTKGSSEYVEFGAGDLVTIPKGLSCTWDVSVAVDKHYKFE 99 + ++S L ITI+ NPPES L +L ++ WPKWGC K+ + A+ETCYLL+GKVK Y GS E VE AGD V PKG+SCTWDVSVAVDKHY+FE Sbjct: 36 IRAESTEKLGITIEKNPPESKLTQLGVRSWPKWGCPPSKFPWTYSAKETCYLLQGKVKVYPNGSDEGVEIEAGDFVVFPKGMSCTWDVSVAVDKHYQFE 134
BLAST of Vfaba.Hedin2.R1.3g056360.1 vs. Araport11
Match: AT4G28703.1 (| RmlC-like cupins superfamily protein | Chr4:14166365-14166798 FORWARD LENGTH=107 | 201606) HSP 1 Score: 124.02 bits (310), Expect = 4.811e-38 Identity = 59/106 (55.66%), Postives = 73/106 (68.87%), Query Frame = 0 Query: 5 SKSNLKITIQSNPPESTLAELNIKCWPKWGCSAGKYQLKFDAEETCYLLKGKVKAYTKGSSEY---------VEFGAGDLVTIPKGLSCTWDVSVAVDKHYKFEAS 101 + N +I ++ NP ++ L EL K WPKWGCS GKY LK++AEE CY+L+GKVK Y K VEFGAGD+VT PKGLSCTWDVS++VDKHY F +S Sbjct: 2 ADQNPRIIVEQNPSQARLDELKFKSWPKWGCSPGKYHLKYEAEEICYILRGKVKVYPKPPPSSSSDAEVEWCVEFGAGDIVTFPKGLSCTWDVSLSVDKHYIFLSS 107
BLAST of Vfaba.Hedin2.R1.3g056360.1 vs. Araport11
Match: AT4G10280.1 (| RmlC-like cupins superfamily protein | Chr4:6375220-6375996 REVERSE LENGTH=140 | 201606) HSP 1 Score: 67.3958 bits (163), Expect = 2.034e-15 Identity = 32/92 (34.78%), Postives = 47/92 (51.09%), Query Frame = 0 Query: 11 ITIQSNPPESTLAELNIKCWPKWGCSAGKYQLKFDAEETCYLLKGKVKAYTKG---SSEYVEFGAGDLVTIPKGLSCTWDVSVAVDKHYKFE 99 + I ++ LA+L + WPKW + K+ +F ET Y ++GKVK G E E G GD+V PK + W+++ AV K Y E Sbjct: 48 VKILRQASDTKLAQLGVASWPKWEGAPSKFPWEFKKTETIYFMEGKVKVNVDGYDEEEETFEIGKGDVVVFPKDMKVVWEITEAVKKQYSLE 139
BLAST of Vfaba.Hedin2.R1.3g056360.1 vs. Araport11
Match: AT4G10290.1 (| RmlC-like cupins superfamily protein | Chr4:6379958-6381720 REVERSE LENGTH=120 | 201606) HSP 1 Score: 53.9138 bits (128), Expect = 2.220e-10 Identity = 29/89 (32.58%), Postives = 43/89 (48.31%), Query Frame = 0 Query: 11 ITIQSNPPESTLAELNIKCWPKWGCSAGKYQLKFDAEETCYLLKGKVKAYTKGSS---EYVEFGAGDLVTIPKGLSCTWDVSVAVDKHY 96 + + ++ LAEL + W W K+ KF ET Y ++GK+K + E +EF AGDLV P+ ++ DV V K Y Sbjct: 20 VKVMRQTSDAKLAELGVTSWQLWESMPRKFPWKFKKTETMYFVEGKLKVKVEDHHKEGEALEFVAGDLVVFPQDMNVFVDVIEDVKKRY 108 The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.3g056360.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL) Total hits: 10
BLAST of Vfaba.Hedin2.R1.3g056360.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot) Total hits: 0
BLAST of Vfaba.Hedin2.R1.3g056360.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11) Total hits: 5
InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vfaba.Hedin2.R1.3g056360.1_vfh_v1 ID=Vfaba.Hedin2.R1.3g056360.1_vfh_v1; Name=Vfaba.Hedin2.R1.3g056360.1; organism=Vicia faba; type=mRNA; length=315bpback to top protein sequence of Vfaba.Hedin2.R1.3g056360.1_vfh_v1 >Vfaba.Hedin2.R1.3g056360.1_vfh_v1 ID=Vfaba.Hedin2.R1.3g056360.1_vfh_v1; Name=Vfaba.Hedin2.R1.3g056360.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=104bpback to top mRNA from alignment at chr3:353528542..353528954- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>Vfaba.Hedin2.R1.3g056360.1_vfh_v1 ID=Vfaba.Hedin2.R1.3g056360.1_vfh_v1; Name=Vfaba.Hedin2.R1.3g056360.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr3:353528542..353528954- (Vicia fababack to top |