Vfaba.Hedin2.R1.3g061480.1
|
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Vfaba.Hedin2.R1.3g061480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0A8KXA9|A0A0A8KXA9_9FABA (His5 protein OS=Vavilovia formosa OX=512756 GN=his5 PE=3 SV=1) HSP 1 Score: 207.994 bits (528), Expect = 3.709e-63 Identity = 183/263 (69.58%), Postives = 201/263 (76.43%), Query Frame = 0 Query: 1 MATEEPIVAVESVPEPIVTEPTVTEPEVPEKDEPTGEVEKTKKTKESKPKKASKPRNPASHPSYEEMIKDAIVSLKEKSGSSQYAIAKFIEEKHKQLPANFKKLLLQNLKKKVASGKLVKVKGSFKLSSAAKKPAV--------AKPKTKPAAKVASKAKAVAAKPKKAVAKPKTVASKAKPTAAKTKVAAKAKPVVKPKSKGKPAKVAKTSAKTTPGKKVAAA----KKVEVAKKVPVKSVKAKSVKTPVKKVS-VKRGGKK 250
MATEEPI+AVE V EP EP V+E + +EP E +KTKK+KESKPKKASKPRNPASHP+YEEMIKDAIVSLKEK+GSSQYAIAKFIEEKHKQLPANFKKLLLQNLKKKVASGKL+KVKGSFKLS+AAKKP V AK K AK A+K KA A K +K K+V +K K AAK KV AK K VKPK K K AKVAKTS KTTPGKK+A A KKV V KK PVKSVKAKSVK+P KK + VKRGG+K
Sbjct: 1 MATEEPIIAVEPVLEPATAEPPVSE----KVEEPKAETQKTKKSKESKPKKASKPRNPASHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKHKQLPANFKKLLLQNLKKKVASGKLLKVKGSFKLSAAAKKPVVAKPKTKPAAKAKAAVKAKTAAKPKAKAVVKPKVASKSKSVTTKPKTAAAKPKVVAKTKAAVKPKPKAKSAKVAKTSTKTTPGKKIAVAKTAPKKVAVTKKAPVKSVKAKSVKSPAKKATGVKRGGRK 259
BLAST of Vfaba.Hedin2.R1.3g061480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3LH43|A0A2K3LH43_TRIPR (Histone H1 (Fragment) OS=Trifolium pratense OX=57577 GN=histone H1 PE=3 SV=1) HSP 1 Score: 197.593 bits (501), Expect = 2.733e-59 Identity = 174/265 (65.66%), Postives = 190/265 (71.70%), Query Frame = 0 Query: 1 MATEEPIVAVESVPEPIVTEPTVTEPEVPEKDEPTGEVEKTKKTKESKPKKASKPRNPASHPSYEEMIKDAIVSLKEKSGSSQYAIAKFIEEKHK-QLPANFKKLLLQNLKKKVASGKLVKVKGSFKL--------------SSAAKKPAVAKPKTKPAAKVASKAKAVAAKPKKAVAKPKTVASKAKPTAAKTKVAAKAKPV-------VKPKSKGKPAKVAKTSAKTTPGKKVAAAKKVEVAKKVPVKSVKAKSVKTPVKKVS 243
MATEEPIVAVE VPEP +TEP P ++ +VE KKTKESKPKKASKPR+PASHP+YEEMIKDAIVSLKE++GSSQYAIAKFIEEKHK QLP+NFKKLLLQNLKK VASGKLVKVKGSFKL S A KKPA +KPKTKP+A SKAK V KP KA +KPKT A K K T AK K AA V VK K K K AKVA+TS +T+PGKKV KKV AKK PVKSVK K VK+P KKVS
Sbjct: 1 MATEEPIVAVEPVPEPTITEP-------PASEKEEAKVEAEKKTKESKPKKASKPRSPASHPTYEEMIKDAIVSLKERTGSSQYAIAKFIEEKHKQQLPSNFKKLLLQNLKKNVASGKLVKVKGSFKLPSKTTKPSSSVTTASQANKKPAASKPKTKPSAS-KSKAKTV-VKP-KAASKPKTAAVKTKTTVAKPKPAAAKSKVAAKPKAGVKAKPKDKSAKVARTSTRTSPGKKV--PKKVVAAKKAPVKSVKPKIVKSPAKKVS 253
BLAST of Vfaba.Hedin2.R1.3g061480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3KDQ2|A0A2K3KDQ2_TRIPR (Histone H1 (Fragment) OS=Trifolium pratense OX=57577 GN=histone H1 PE=3 SV=1) HSP 1 Score: 188.734 bits (478), Expect = 4.794e-56 Identity = 151/221 (68.33%), Postives = 165/221 (74.66%), Query Frame = 0 Query: 52 ASKPRNPASHPSYEEMIKDAIVSLKEKSGSSQYAIAKFIEEKHK-QLPANFKKLLLQNLKKKVASGKLVKVKGSFKL--------------SSAAKKPAVAKPKTKPAAKVASKAKAVAAKPKKAVAKPKTVASKAKPTAAK-------TKVAAKAKPVVKPKSKGKPAKVAKTSAKTTPGKKVAAAKKVEVAKKVPVKSVKAKSVKTPVKKVSVKRGGKK 250
ASKPR+PASHP+YEEMIKDAIVSLKE++GSSQYAIAKFIEEKHK QLP+NFKKLLLQNLKK VASGKLVKVKGSFKL S A KKPA +KPKTKP+A SKAK V KP KA +KPKT A K K T AK +KVAAK K VK K K K AKVA+TS +T+PGKKV KKV AKK PVKSVK K VK+P KKVSVKRGG+K
Sbjct: 16 ASKPRSPASHPTYEEMIKDAIVSLKERTGSSQYAIAKFIEEKHKQQLPSNFKKLLLQNLKKNVASGKLVKVKGSFKLPSKTTKPSSSVTTASQANKKPAASKPKTKPSAS-KSKAKTV-VKP-KAASKPKTAAVKTKTTVAKPKPAAAKSKVAAKPKAGVKAKPKDKSAKVARTSTRTSPGKKV--PKKVVAAKKAPVKSVKPKIVKSPAKKVSVKRGGRK 231
BLAST of Vfaba.Hedin2.R1.3g061480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3LZD3|A0A2K3LZD3_TRIPR (Histone H1 (Fragment) OS=Trifolium pratense OX=57577 GN=histone H1 PE=3 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 1.744e-55 Identity = 150/221 (67.87%), Postives = 164/221 (74.21%), Query Frame = 0 Query: 52 ASKPRNPASHPSYEEMIKDAIVSLKEKSGSSQYAIAKFIEEKHK-QLPANFKKLLLQNLKKKVASGKLVKVKGSFKL--------------SSAAKKPAVAKPKTKPAAKVASKAKAVAAKPKKAVAKPKTVASKAKPTAAK-------TKVAAKAKPVVKPKSKGKPAKVAKTSAKTTPGKKVAAAKKVEVAKKVPVKSVKAKSVKTPVKKVSVKRGGKK 250
ASKPR+PASHP+YEEMIKDAIVSLKE++GSSQYAIAKFIEEKHK QLP+NFKKLLLQNLKK VASGKLVKVKGSFKL S A KKPA +KPKTKP+A SKAK V KP KA +KPKT A K K T AK +KVAAK K VK K K K AKVA+TS +T+PGKKV KKV AKK PVKSVK K VK+P KKVS KRGG+K
Sbjct: 16 ASKPRSPASHPTYEEMIKDAIVSLKERTGSSQYAIAKFIEEKHKQQLPSNFKKLLLQNLKKNVASGKLVKVKGSFKLPSKTTKPSSSVTTASQANKKPAASKPKTKPSAS-KSKAKTV-VKP-KAASKPKTAAVKTKTTVAKPKPAAAKSKVAAKPKAGVKAKPKDKSAKVARTSTRTSPGKKV--PKKVVAAKKAPVKSVKPKIVKSPAKKVSTKRGGRK 231
BLAST of Vfaba.Hedin2.R1.3g061480.1 vs. UniProtKB/TrEMBL
Match: tr|G8YZP6|G8YZP6_PEA (Histone H1 subtype 3 OS=Pisum sativum subsp. sativum OX=208194 GN=his3 PE=3 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 5.396e-55 Identity = 182/268 (67.91%), Postives = 194/268 (72.39%), Query Frame = 0 Query: 1 MATEEPIVAVESVPEPIVTEPTVTEPEVPEKDEPTGEVEKTKKTKESKPKKASKPRNPASHPSYEEMIKDAIVSLKEKSGSSQYAIAKFIEEKHKQLPANFKKLLLQNLKKKVASGKLVKVKGSFKLSSAAKKPAVAKPKTKPAAKVASKAKAVAAKPKKAVAKPKTVASKAKPTAA-------------KTKVAAKAKPVVKPKSKGKPAKVAKTSAKTTPGKKVAAA----KKVEVAKKVPVKSVKAKSVKTPVKKVS-VKRGGKK 250
MATEEPI+AVE V EP EP V E E DEP E EKTKK KE+KPKKASKPRNPASHP+YEEMIKDAIVSLKEK+GSSQYAIAKFIEEK KQLP NFK+LLLQNLKK VASGKL KVK SFKLS+AAKKPAVAKPK+KPAAKV S AAKPK ASKAK K K+ AK K VKPK K KPAKVAKTS KTTPGKKVA KKV AKK PVKSVK K+VK+P KK S +KRGG+K
Sbjct: 1 MATEEPIIAVEPVSEPATAEPPVLE----EVDEPKAEAEKTKKVKETKPKKASKPRNPASHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKQKQLPGNFKRLLLQNLKKNVASGKLTKVKASFKLSAAAKKPAVAKPKSKPAAKVKSVKAKTAAKPKAKAVVKPKAASKAKSVTTKPKAAAAKPKAAAKPKIVAKPKAAVKPKPKAKPAKVAKTSTKTTPGKKVAVGKSAPKKVAAAKKAPVKSVKPKTVKSPAKKASGLKRGGRK 264
BLAST of Vfaba.Hedin2.R1.3g061480.1 vs. UniProtKB/TrEMBL
Match: tr|I3S6T7|I3S6T7_MEDTR (H15 domain-containing protein OS=Medicago truncatula OX=3880 PE=2 SV=1) HSP 1 Score: 182.956 bits (463), Expect = 1.294e-53 Identity = 162/262 (61.83%), Postives = 182/262 (69.47%), Query Frame = 0 Query: 1 MATEEPIVAVESVPEPIVTEPTVTEPEVPEKD--EPTGEVEKTKKTK----ESKPKKASKPRNPASHPSYEEMIKDAIVSLKEKSGSSQYAIAKFIEEKHKQLPANFKKLLLQNLKKKVASGKLVKVKGSFKLSSAAK----KPAVAKPKTKPAAKVASKAKAVAAKPKKAVAKPKTVASKAKPTAAKTKVAAKAKPVVKPKSKGKPAKVAKTSAKTTPGKKVAAAKKVEVAKKVPVKSV--KAKSVKTPVKKVSVKRGGKK 250
MATEEPIVAVE VPEP + EP EKD EP KKTK ESKPKK SKPRNPASHP+YEEMIKDAIVSLKE++GSSQYAIAKFIEEKHKQLP+NFKKLLLQNLKK VASGKLVKVKGSFKLSSA + A K K A V + K+V AKPK A AKPK+ A+K K K K AAK KP AKVAKT+ +T+PGKKVA AK K VK+V K K+V++P KKV++KRGG+K
Sbjct: 1 MATEEPIVAVEPVPEPTI----AAEPPASEKDQSEPKAAELAEKKTKKVAKESKPKKVSKPRNPASHPTYEEMIKDAIVSLKERTGSSQYAIAKFIEEKHKQLPSNFKKLLLQNLKKNVASGKLVKVKGSFKLSSATRPAAKVKAKPAAKPKAKAVVKPRTKSVTAKPKAAAAKPKSAATKPKAAVGKAKTAAKVKPN---------AKVAKTTTRTSPGKKVATAKPAAKKKTP-VKNVKPKTKTVRSPAKKVAIKRGGRK 248
BLAST of Vfaba.Hedin2.R1.3g061480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A072VKP5|A0A072VKP5_MEDTR (Linker histone H1 and h5 family protein OS=Medicago truncatula OX=3880 GN=25484327 PE=3 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 4.747e-53 Identity = 163/262 (62.21%), Postives = 182/262 (69.47%), Query Frame = 0 Query: 1 MATEEPIVAVESVPEPIVTEPTVTEPEVPEKD--EPTGEVEKTKKTK----ESKPKKASKPRNPASHPSYEEMIKDAIVSLKEKSGSSQYAIAKFIEEKHKQLPANFKKLLLQNLKKKVASGKLVKVKGSFKLSSAA----KKPAVAKPKTKPAAKVASKAKAVAAKPKKAVAKPKTVASKAKPTAAKTKVAAKAKPVVKPKSKGKPAKVAKTSAKTTPGKKVAAAKKVEVAKKVPVKSV--KAKSVKTPVKKVSVKRGGKK 250
MATEEPIVAVE VPEP + EP EKD EP KKTK ESKPKK SKPRNPASHP+YEEMIKDAIVSLKE++GSSQYAIAKFIEEKHKQLP+NFKKLLLQNLKK VASGKLVKVKGSFKLSSA K A K K A V + K+V AKPK A AKPK+ A+K K K K AAK KP AKVAKT+ +T+PGKKVA AK K VK+V K K+V++P KKV++KRGG+K
Sbjct: 1 MATEEPIVAVEPVPEPTI----AAEPPASEKDQSEPKAAELAEKKTKKVAKESKPKKVSKPRNPASHPTYEEMIKDAIVSLKERTGSSQYAIAKFIEEKHKQLPSNFKKLLLQNLKKNVASGKLVKVKGSFKLSSATKPAAKVKAKPAAKPKAKAVVKPRTKSVTAKPKAAAAKPKSAATKPKAAVGKAKTAAKVKPN---------AKVAKTTTRTSPGKKVATAKPAAKKKTP-VKNVKPKTKTVRSPAKKVAIKRGGRK 248
BLAST of Vfaba.Hedin2.R1.3g061480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3NQY8|A0A2K3NQY8_TRIPR (Histone H1 (Fragment) OS=Trifolium pratense OX=57577 GN=histone H1 PE=3 SV=1) HSP 1 Score: 177.948 bits (450), Expect = 1.567e-51 Identity = 155/236 (65.68%), Postives = 170/236 (72.03%), Query Frame = 0 Query: 30 EKDEPTGEVEKTKKTKESKPKKASKPRNPASHPSYEEMIKDAIVSLKEKSGSSQYAIAKFIEEKHK-QLPANFKKLLLQNLKKKVASGKLVKVKGSFKL--------------SSAAKKPAVAKPKTKPAAKVASKAKAVAAKPKKAVAKPKTVASKAKPTAAK-------TKVAAKAKPVVKPKSKGKPAKVAKTSAKTTPGKKVAAAKKVEVAKKVPVKSVKAKSVKTPVKKVS 243
EK+EP E EK K + K KASKPR+PASHP+YEEMIKDAIVSLKE++GSSQYAIAKFIEEKHK QLP+NFKKLLLQNLKK VASGKLVKVKGSFKL S A KKPA +KPKTKP+A SKAK V KP KA +KPKT A K K T AK +KVAAK K VK K K K AKVA+TS +T+PGKKV KKV AKK PVKSVK K VK+P KKVS
Sbjct: 20 EKEEPKVEAEKKTKESKPK--KASKPRSPASHPTYEEMIKDAIVSLKERTGSSQYAIAKFIEEKHKQQLPSNFKKLLLQNLKKNVASGKLVKVKGSFKLPSKTTKPSSSVTTASQANKKPAASKPKTKPSAS-KSKAKTV-VKP-KAASKPKTAAVKTKTTVAKPKPAAAKSKVAAKPKAGVKAKPKDKSAKVARTSTRTSPGKKV--PKKVVAAKKAPVKSVKPKIVKSPAKKVS 248
BLAST of Vfaba.Hedin2.R1.3g061480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6M8I4|A0A2Z6M8I4_TRISU (H15 domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_293870 PE=3 SV=1) HSP 1 Score: 175.637 bits (444), Expect = 1.051e-50 Identity = 164/264 (62.12%), Postives = 180/264 (68.18%), Query Frame = 0 Query: 1 MATEEPIVAVESVPEPIVTEPTVTEPEVPEKDEPTGEVEKTKKTKESKPKKASKPRNPASHPSYEEMIKDAIVSLKEKSGSSQYAIAKFIEEKHKQLPANFKKLLLQNLKKKVASGKLVKVKGSFKLSSAAKKPAVA---------KPKTKPAAKVASKAKAVAAKPKKAVAKPKTVASKAKPTAAKTKV-AAKAKPVVKPKSKGKPAKVAKTSAKTTPGKKVAAA----KKVEVAKKVPVKSVKAKSVKTPVKKVSVKRGGKK 250
MATEEPIVAVE +PEP +E K + K SKPKKASKPR+PASHPSYEEMIKDAIVSLKE++GSSQYAIAKFIEEKHKQLP+NFKKLLLQNLKK VASGKLVKVKGSFKLSS K +V +K KA AAKPK AV K K A+K K K+KV AAK K VK K K K AKVA+TS +T+PGKKV A KKV AKKV VKSVK KSVK+P KKVSVKRGG+K
Sbjct: 1 MATEEPIVAVEPIPEPPASE-------------------KEEPKKASKPKKASKPRSPASHPSYEEMIKDAIVSLKERTGSSQYAIAKFIEEKHKQLPSNFKKLLLQNLKKNVASGKLVKVKGSFKLSSNMKPSSVTTEAKKKPTAAKPKTKPTAAKAKPKAAAAKPKAAVVKSKVAAAKPKAAVVKSKVAAAKPKAGVKAKPKEKSAKVARTSTRTSPGKKVVTAKAVPKKVVAAKKVHVKSVKPKSVKSPAKKVSVKRGGRK 245
BLAST of Vfaba.Hedin2.R1.3g061480.1 vs. UniProtKB/TrEMBL
Match: tr|G8YZE3|G8YZE3_PEA (Histone H1 subtype 5 OS=Pisum sativum subsp. elatius OX=47742 GN=His5 PE=3 SV=1) HSP 1 Score: 173.711 bits (439), Expect = 8.618e-50 Identity = 176/265 (66.42%), Postives = 191/265 (72.08%), Query Frame = 0 Query: 1 MATEEPIVAVESVPEPIVTEPTVTEPEVPEKDEPTGEVEKTKKTKESKPKKASKPRNPASHPSYEEMIKDAIVSLKEKSGSSQYAIAKFIEEKHKQLPANFKKLLLQNLKKKVASGKLVKVKGSFKLSSAAKKPAVAKPKTKPAAKVAS----------KAKAVAAKPKKAVAKPKTVASKAKPTAAKTKVAAKAKPVVKPKSKGKPAKVAKTSAKTTPG----KKVAAAKKVEVAKKVPVKSVKAKSVKTPVKKVS-VKRGGKK 250
MATEEPI+AVE VPEP V+E +EP E EKTKK KESKPKKASKPRNPASHP+YEEMIKDAIVSLKEK+GSSQYAIAKFIEEK KQLPANFKKLLLQ+LKKKVASGKLVKVKGS+KLS+AAKKP VAKPKTKPAAK + KAKAV K+V A+ AAK K AKAK KPK K K KVA+TS KTTPG A KK AKK PVKSVKAKSVK+P KK + VKRGG+K
Sbjct: 1 MATEEPIIAVEPVPEPPVSEKV---------EEPKAETEKTKKAKESKPKKASKPRNPASHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKQKQLPANFKKLLLQSLKKKVASGKLVKVKGSYKLSAAAKKPTVAKPKTKPAAKAKAAVKAKTAARPKAKAVVKPKSKSVTTKPKAAAAKPKAAAKPKAVAKAKAAAKPKPKAKSTKVARTSTKTTPGKKVAVAKPAPKKAAAAKKAPVKSVKAKSVKSPAKKATGVKRGGRK 256
BLAST of Vfaba.Hedin2.R1.3g061480.1 vs. UniProtKB/Swiss-Prot
Match: sp|P08283|H1_PEA (Histone H1 OS=Pisum sativum OX=3888 PE=2 SV=1) HSP 1 Score: 167.933 bits (424), Expect = 4.099e-50 Identity = 116/129 (89.92%), Postives = 122/129 (94.57%), Query Frame = 0 Query: 1 MATEEPIVAVESVPEPIVTEPT-VTEPEVPEKDEPTGEVEKTKKTKESKPKKASKPRNPASHPSYEEMIKDAIVSLKEKSGSSQYAIAKFIEEKHKQLPANFKKLLLQNLKKKVASGKLVKVKGSFKLS 128
MATEEPIVAVE+VPEPIVTEPT +TEPEVPEK+EP EVEKTKK K SKPKKASKPRNPASHP+YEEMIKDAIVSLKEK+GSSQYAIAKFIEEK KQLPANFKKLLLQNLKK VASGKL+KVKGSFKLS
Sbjct: 1 MATEEPIVAVETVPEPIVTEPTTITEPEVPEKEEPKAEVEKTKKAKGSKPKKASKPRNPASHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKQKQLPANFKKLLLQNLKKNVASGKLIKVKGSFKLS 129
BLAST of Vfaba.Hedin2.R1.3g061480.1 vs. UniProtKB/Swiss-Prot
Match: sp|P26569|H12_ARATH (Histone H1.2 OS=Arabidopsis thaliana OX=3702 GN=At2g30620 PE=1 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 2.956e-39 Identity = 116/223 (52.02%), Postives = 136/223 (60.99%), Query Frame = 0 Query: 59 ASHPSYEEMIKDAIVSLKEKSGSSQYAIAKFIEEKHKQLPANFKKLLLQNLKKKVASGKLVKVKGSFKLSSAAKKPAVAKPKTKPAAKVASKAKAVAAKPKKAVAKPKTVAS-------------------------KAKPTAAKTK------VAAKAKPVVKPKSKGKPAKVAKTSAKTTPGKKVAA-AKKVEVAKKVPVKSVKAKSVKTPVKKVSVKRGGK 249
+SHP+YEEMIKDAIV+LKE++GSSQYAI KFIEEKHK LP F+KLLL NLK+ VAS KLVKVK SFK+ SA + A P KPAA V KA V AKPK VA A KAK TAAK K V+ KPK+K +PAK ++TS +T+PGKKVAA AKKV V KK P KSVK VK+P K+ S ++ K
Sbjct: 60 SSHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLVKVKASFKIPSAR---SAATP--KPAAPVKKKA-TVVAKPKGKVAAAVAPAKAKAAAKGTKKPAAKVVAKAKVTAKPKAKVTAAKPKSKSVAAVSKTKAVAAKPKAKERPAKASRTSTRTSPGKKVAAPAKKVAVTKKAPAKSVK---VKSPAKRASTRKAKK 273
BLAST of Vfaba.Hedin2.R1.3g061480.1 vs. UniProtKB/Swiss-Prot
Match: sp|P27806|H1_WHEAT (Histone H1 OS=Triticum aestivum OX=4565 PE=2 SV=2) HSP 1 Score: 103.605 bits (257), Expect = 1.517e-25 Identity = 50/78 (64.10%), Postives = 62/78 (79.49%), Query Frame = 0 Query: 54 KPRNPASHPSYEEMIKDAIVSLKEKSGSSQYAIAKFIEEKHK-QLPANFKKLLLQNLKKKVASGKLVKVKGSFKLSSA 130
KPR +HPSY EM+ +AI +LKE+SGSS AI KFIE+KHK LPANF+K+LL +KK VA+GKL KVKGS+KL+ A
Sbjct: 48 KPRVTPAHPSYAEMVSEAIAALKERSGSSTIAIGKFIEDKHKAHLPANFRKILLTQIKKLVAAGKLTKVKGSYKLAKA 125
BLAST of Vfaba.Hedin2.R1.3g061480.1 vs. UniProtKB/Swiss-Prot
Match: sp|P26568|H11_ARATH (Histone H1.1 OS=Arabidopsis thaliana OX=3702 GN=At1g06760 PE=1 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 2.072e-24 Identity = 57/76 (75.00%), Postives = 65/76 (85.53%), Query Frame = 0 Query: 52 ASKPRNPASHPSYEEMIKDAIVSLKEKSGSSQYAIAKFIEEKHKQLPANFKKLLLQNLKKKVASGKLVKVKGSFKL 127
A K R +SHP+YEEMIKDAIV+LKE++GSSQYAI KFIEEK K+LP F+KLLL NLK+ VASGKLVKVK SFKL
Sbjct: 53 APKKRTVSSHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKRKELPPTFRKLLLLNLKRLVASGKLVKVKASFKL 128
BLAST of Vfaba.Hedin2.R1.3g061480.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9M5W4|H1_EUPES (Histone H1 OS=Euphorbia esula OX=3993 PE=2 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 1.507e-23 Identity = 51/68 (75.00%), Postives = 61/68 (89.71%), Query Frame = 0 Query: 59 ASHPSYEEMIKDAIVSLKEKSGSSQYAIAKFIEEKHKQLPANFKKLLLQNLKKKVASGKLVKVKGSFK 126
+SHPS+ EMI DAI +LKE++GSSQYAI KF+E+KHKQLP+NF+KLLL +LKK VASGKLVKVK SFK
Sbjct: 49 SSHPSFFEMISDAISTLKERTGSSQYAINKFVEDKHKQLPSNFRKLLLFHLKKLVASGKLVKVKNSFK 116
BLAST of Vfaba.Hedin2.R1.3g061480.1 vs. UniProtKB/Swiss-Prot
Match: sp|P40267|H1_SOLPN (Histone H1 OS=Solanum pennellii OX=28526 PE=2 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 3.319e-22 Identity = 53/116 (45.69%), Postives = 70/116 (60.34%), Query Frame = 0 Query: 36 GEVE---------KTKKTKESKPKKASKPRNP----------ASHPSYEEMIKDAIVSLKEKSGSSQYAIAKFIEEKHK-QLPANFKKLLLQNLKKKVASGKLVKVKGSFKLSSAA 131
GEVE + K KE P KPR P +HP Y +MIK+A+++L EK GSS YA+AK++E+KHK +LPANF+K+L LK A GKL+K+K S+KLS A
Sbjct: 5 GEVENPTVVQRPTEASKVKEQAPATDKKPRAPKEKKPKSAKAVTHPPYFQMIKEALLALNEKGGSSPYAVAKYMEDKHKDELPANFRKILGLQLKNSAAKGKLIKIKASYKLSEAG 120
BLAST of Vfaba.Hedin2.R1.3g061480.1 vs. UniProtKB/Swiss-Prot
Match: sp|P23444|H1_MAIZE (Histone H1 OS=Zea mays OX=4577 PE=2 SV=2) HSP 1 Score: 93.9745 bits (232), Expect = 7.236e-22 Identity = 47/72 (65.28%), Postives = 57/72 (79.17%), Query Frame = 0 Query: 60 SHPSYEEMIKDAIVSLKEKSGSSQYAIAKFIEEKHK-QLPANFKKLLLQNLKKKVASGKLVKVKGSFKLSSA 130
+H Y EM+ +AI SLKE++GSS YAIAKF+E+KHK +LP NF+KLL LKK VA GKL KVK S+KLSSA
Sbjct: 49 THLPYAEMVSEAITSLKERTGSSSYAIAKFVEDKHKAKLPPNFRKLLNVQLKKLVAGGKLTKVKNSYKLSSA 120
BLAST of Vfaba.Hedin2.R1.3g061480.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q08864|H11_VOLCA (Histone H1-I OS=Volvox carteri OX=3067 GN=H1-I PE=2 SV=3) HSP 1 Score: 80.1073 bits (196), Expect = 1.253e-16 Identity = 58/109 (53.21%), Postives = 69/109 (63.30%), Query Frame = 0 Query: 60 SHPSYEEMIKDAIVSLKEKSGSSQYAIAKFIEEKHKQ--LPANFKKLLLQNLKKKVASGKLVKVKGSFKLSSAAKKPAVAKPKTKPAAKVASKAKAVAAKPKKAVAKPK 166
+HP Y EM+KDAI +LKE++GSS A+ KFIE K+ + NF K L Q +K V GKLVKVKGSFKLS A K A AK T AK + AKPKK+ AKPK
Sbjct: 58 THPPYIEMVKDAITTLKERNGSSLPALKKFIENKYGKDIHDKNFAKTLSQVVKTFVKGGKLVKVKGSFKLSEALK--AKAKKSTPKKAKADGE-----AKPKKSEAKPK 159
BLAST of Vfaba.Hedin2.R1.3g061480.1 vs. UniProtKB/Swiss-Prot
Match: sp|P54671|H1_DICDI (Histone H1 OS=Dictyostelium discoideum OX=44689 GN=H1 PE=1 SV=3) HSP 1 Score: 68.5514 bits (166), Expect = 5.949e-13 Identity = 35/74 (47.30%), Postives = 45/74 (60.81%), Query Frame = 0 Query: 60 SHPSYEEMIKDAIVSLKEKSGSSQYAIAKFIEEKHKQLPANFKKLLLQNLKKKVASGKLVKVKGSFKLSSAAKK 133
+HP+Y+ MI AI K+++GSSQ AI K+IE + P FK L LK+ VA G L VK S+KLS KK
Sbjct: 23 NHPTYQVMISTAIAHYKDRTGSSQPAIIKYIEANYNVAPDTFKTQLKLALKRLVAKGTLTMVKASYKLSEEGKK 96
BLAST of Vfaba.Hedin2.R1.3g061480.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q08865|H12_VOLCA (Histone H1-II OS=Volvox carteri OX=3067 GN=H1-II PE=2 SV=3) HSP 1 Score: 68.5514 bits (166), Expect = 1.500e-12 Identity = 41/81 (50.62%), Postives = 53/81 (65.43%), Query Frame = 0 Query: 54 KPRNPASHPSYEEMIKDAIVSLKEKSGSSQYAIAKFIEEKHKQLPAN--FKKLLLQNLKKKVASGKLVKVKGSFKLSSAAK 132
KP+ +HP Y +M+ DAI+SLKE+ GSS A+ KFIE K+ + + F K L LK V +GKLVKVK S+KLS A K
Sbjct: 18 KPKTAPTHPPYIQMVTDAILSLKERDGSSLPALKKFIEAKYGKDIHDKKFPKTLSLALKTFVKNGKLVKVKNSYKLSDAQK 98
BLAST of Vfaba.Hedin2.R1.3g061480.1 vs. Araport11
Match: AT2G30620.1 (| winged-helix DNA-binding transcription factor family protein | Chr2:13045360-13046267 FORWARD LENGTH=273 | 201606) HSP 1 Score: 140.198 bits (352), Expect = 3.024e-40 Identity = 116/223 (52.02%), Postives = 136/223 (60.99%), Query Frame = 0 Query: 59 ASHPSYEEMIKDAIVSLKEKSGSSQYAIAKFIEEKHKQLPANFKKLLLQNLKKKVASGKLVKVKGSFKLSSAAKKPAVAKPKTKPAAKVASKAKAVAAKPKKAVAKPKTVAS-------------------------KAKPTAAKTK------VAAKAKPVVKPKSKGKPAKVAKTSAKTTPGKKVAA-AKKVEVAKKVPVKSVKAKSVKTPVKKVSVKRGGK 249
+SHP+YEEMIKDAIV+LKE++GSSQYAI KFIEEKHK LP F+KLLL NLK+ VAS KLVKVK SFK+ SA + A P KPAA V KA V AKPK VA A KAK TAAK K V+ KPK+K +PAK ++TS +T+PGKKVAA AKKV V KK P KSVK VK+P K+ S ++ K
Sbjct: 60 SSHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLVKVKASFKIPSAR---SAATP--KPAAPVKKKA-TVVAKPKGKVAAAVAPAKAKAAAKGTKKPAAKVVAKAKVTAKPKAKVTAAKPKSKSVAAVSKTKAVAAKPKAKERPAKASRTSTRTSPGKKVAAPAKKVAVTKKAPAKSVK---VKSPAKRASTRKAKK 273
BLAST of Vfaba.Hedin2.R1.3g061480.1 vs. Araport11
Match: AT2G30620.2 (| winged-helix DNA-binding transcription factor family protein | Chr2:13045360-13046267 FORWARD LENGTH=202 | 201606) HSP 1 Score: 135.961 bits (341), Expect = 2.272e-39 Identity = 97/192 (50.52%), Postives = 115/192 (59.90%), Query Frame = 0 Query: 59 ASHPSYEEMIKDAIVSLKEKSGSSQYAIAKFIEEKHKQLPANFKKLLLQNLKKKVASGKLVKVKGSFKLSSAAKKPAVAKPKTKPAAKVASKAKAVAAKPKKAVAKPKTVASKAKPTAAKTKVAAKAKPVVKPKSKGKPAKVAKTSAKTTPGKKVAA-AKKVEVAKKVPVKSVKAKSVKTPVKKVSVKRGGK 249
+SHP+YEEMIKDAIV+LKE++GSSQYAI KFIEEKHK LP F+KLLL NLK+ VAS KLVKVK SFK+ SA + A P KPAA V KA VA KPK+ ++TS +T+PGKKVAA AKKV V KK P KSVK VK+P K+ S ++ K
Sbjct: 60 SSHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLVKVKASFKIPSAR---SAATP--KPAAPVKKKATVVA----------------------------------KPKA-------SRTSTRTSPGKKVAAPAKKVAVTKKAPAKSVK---VKSPAKRASTRKAKK 202
BLAST of Vfaba.Hedin2.R1.3g061480.1 vs. Araport11
Match: AT1G06760.1 (| winged-helix DNA-binding transcription factor family protein | Chr1:2076687-2077616 REVERSE LENGTH=274 | 201606) HSP 1 Score: 101.293 bits (251), Expect = 2.120e-25 Identity = 57/76 (75.00%), Postives = 65/76 (85.53%), Query Frame = 0 Query: 52 ASKPRNPASHPSYEEMIKDAIVSLKEKSGSSQYAIAKFIEEKHKQLPANFKKLLLQNLKKKVASGKLVKVKGSFKL 127
A K R +SHP+YEEMIKDAIV+LKE++GSSQYAI KFIEEK K+LP F+KLLL NLK+ VASGKLVKVK SFKL
Sbjct: 53 APKKRTVSSHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKRKELPPTFRKLLLLNLKRLVASGKLVKVKASFKL 128
BLAST of Vfaba.Hedin2.R1.3g061480.1 vs. Araport11
Match: AT2G18050.1 (| histone H1-3 | Chr2:7846095-7846670 FORWARD LENGTH=167 | 201606) HSP 1 Score: 88.1965 bits (217), Expect = 1.806e-21 Identity = 49/84 (58.33%), Postives = 60/84 (71.43%), Query Frame = 0 Query: 52 ASKPRNP--ASHPSYEEMIKDAIVSLKEKSGSSQYAIAKFIEEKHKQ-LPANFKKLLLQNLKKKVASGKLVKVKGSFKLSSAAK 132
A KPR P +HP Y +MIK+A++ LKEK+GSS YAIAK IEEKHK LP +F+K L LK VA GKLVK++ S+KLS K
Sbjct: 13 AKKPRKPKTTTHPPYFQMIKEALMVLKEKNGSSPYAIAKKIEEKHKSLLPESFRKTLSLQLKNSVAKGKLVKIRASYKLSDTTK 96
BLAST of Vfaba.Hedin2.R1.3g061480.1 vs. Araport11
Match: AT2G18050.2 (| histone H1-3 | Chr2:7846254-7846670 FORWARD LENGTH=138 | 201606) HSP 1 Score: 75.0998 bits (183), Expect = 8.425e-17 Identity = 47/106 (44.34%), Postives = 66/106 (62.26%), Query Frame = 0 Query: 67 MIKDAIVSLKEKSGSSQYAIAKFIEEKHKQ-LPANFKKLLLQNLKKKVASGKLVKVKGSFKLSSAAKKPAVAKPKTKPAAK--------VASKAKAVAAKPKKAVA 163
MIK+A++ LKEK+GSS YAIAK IEEKHK LP +F+K L LK VA GKLVK++ S+KLS K + + + K K + + ++ + +PKK V+
Sbjct: 1 MIKEALMVLKEKNGSSPYAIAKKIEEKHKSLLPESFRKTLSLQLKNSVAKGKLVKIRASYKLSDTTK--MITRQQDKKNKKNMKQEDKEITKRTRSSSTRPKKTVS 104 The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.3g061480.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of Vfaba.Hedin2.R1.3g061480.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot) Total hits: 10 Position : 0 Zoom : x 1
BLAST of Vfaba.Hedin2.R1.3g061480.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11) Total hits: 5 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vfaba.Hedin2.R1.3g061480.1_vfh_v1 ID=Vfaba.Hedin2.R1.3g061480.1_vfh_v1; Name=Vfaba.Hedin2.R1.3g061480.1; organism=Vicia faba; type=mRNA; length=753bpback to top protein sequence of Vfaba.Hedin2.R1.3g061480.1_vfh_v1 >Vfaba.Hedin2.R1.3g061480.1_vfh_v1 ID=Vfaba.Hedin2.R1.3g061480.1_vfh_v1; Name=Vfaba.Hedin2.R1.3g061480.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=250bpback to top mRNA from alignment at chr3:381499238..381500156- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>Vfaba.Hedin2.R1.3g061480.1_vfh_v1 ID=Vfaba.Hedin2.R1.3g061480.1_vfh_v1; Name=Vfaba.Hedin2.R1.3g061480.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr3:381499238..381500156- (Vicia fababack to top Annotated Terms
The
following terms have been associated with
this mRNA:
|