Vfaba.Hedin2.R1.3g082320.1

Transcript Overview
NameVfaba.Hedin2.R1.3g082320.1
Unique NameVfaba.Hedin2.R1.3g082320.1_vfh_v1
TypemRNA
OrganismVicia faba (Faba bean)
Sequence length417
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr3chromosomechr3:507546908..507547458 -Vicia faba inbred line Hedin/2 genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vfhzwsR275Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vfhzwsR302Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
asvfhL302Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvfhL304Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cavfhL207Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavfhL286Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvfhL0634Cajanus cajan Asha genome v1.0Cajanus cajan
ccvfhL0764Cajanus cajan Asha genome v1.0Cajanus cajan
crvfhL260Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crvfhL381Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvfhL572Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvfhL636Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
psvfhL207Pisum sativum Cameor genome v1aPisum sativum
psvfhL555Pisum sativum Cameor genome v1aPisum sativum
psvfhL583Pisum sativum Cameor genome v1aPisum sativum
vfhvfhR183Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvfhL220Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuR365Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vfhvuR390Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
tifvfhL347Vicia faba cv. Tiffany genome v1.0Vicia faba
caivfhL239Cicer arietinum ICC 4958 genome v2Cicer arietinum
caivfhL349Cicer arietinum ICC 4958 genome v2Cicer arietinum
anvfhL0678Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL0823Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL1138Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
vfhvrvR324Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvrvR425Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvuaR325Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vfhvuaR327Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vfhvssR370Vicia sativa cv. Studenica genome v1.0Vicia sativa
vfhvssR402Vicia sativa cv. Studenica genome v1.0Vicia sativa
canvfhL176Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvfhL239Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvfhL159Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvfhL386Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvfhL174Cicer arietinum
carvfhL242Cicer arietinum
ccavfhL235Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavfhL340Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vfhvumR392Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvumR512Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvvaR362Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vfhvvaR462Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vasvfhL528Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvfhL697Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vfhvstR449Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vfhvstR462Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvfvfhL543Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvfhL612Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vfhvunR338Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vfhvunR361Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
rna-TanjilR_15537Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-TanjilR_31708Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vigun06g112800.2Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
XM_058882668.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
jg30860.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vigun06g112800.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-XM_004494642.2Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Cr_10132.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
rna-TanjilR_10123Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Va09G047680.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vigan.05G138900.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
LR48_mrnaVigan10g153000Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Psat06G0394300-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
XM_058914565.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
rna-XM_014662347.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
rna-KK1_011071Cajanus cajan Asha genome v1.0Cajanus cajan
rna-XM_004495744.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Psat3g007120.1Pisum sativum Cameor genome v1aPisum sativum
Ca_03754Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vigst.05G110500.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Vum_05G01124.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Ca_01235Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Cr_07523.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Psat03G0032800-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Cc_v2.0_08430.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
jg3118.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
evm.model.Chr06.1238Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Phvul.006G101800.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
PvulFLAVERTChr06.1560Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Ca_08528.1Cicer arietinum ICC 4958 genome v2Cicer arietinum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vfaba.Tiffany.R1.3g068640.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vfaba.Tiffany.R1.5g145560.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vfaba.Hedin2.R1.5g185240.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.3g082320Vfaba.Hedin2.R1.3g082320_vfh_v1Vicia fabagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.3g082320.1_vfh_v1-exonVfaba.Hedin2.R1.3g082320.1_vfh_v1-exon-chr3_vfh_v1:507546908..507547027Vicia fabaexon
Vfaba.Hedin2.R1.3g082320.1_vfh_v1-exonVfaba.Hedin2.R1.3g082320.1_vfh_v1-exon-chr3_vfh_v1:507547162..507547458Vicia fabaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.3g082320.1_vfh_v1-cdsVfaba.Hedin2.R1.3g082320.1_vfh_v1-cds-chr3_vfh_v1:507546908..507547027Vicia fabaCDS
Vfaba.Hedin2.R1.3g082320.1_vfh_v1-cdsVfaba.Hedin2.R1.3g082320.1_vfh_v1-cds-chr3_vfh_v1:507547162..507547458Vicia fabaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.3g082320.1_vfh_v1Vfaba.Hedin2.R1.3g082320.1_vfh_v1Vicia fabapolypeptide
Vfaba.Hedin2.R1.3g082320.1_vfh_v1Vfaba.Hedin2.R1.3g082320.1_vfh_v1-proteinVicia fabapolypeptide


Homology
BLAST of Vfaba.Hedin2.R1.3g082320.1 vs. UniProtKB/TrEMBL
Match: tr|B7FMF0|B7FMF0_MEDTR (Sec-independent protein translocase protein TATA OS=Medicago truncatula OX=3880 GN=25484642 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.186e-60
Identity = 102/128 (79.69%), Postives = 113/128 (88.28%), Query Frame = 0
Query:   12 VIP-TKLPIISSSYSNLSFSASNSNTCSLLLKKAKIKTRTTKSFTCNAFFGLGVPELVVIAGVAALVFGPKKLPEVGRSIGQTVKSFQQAAKEFETELKKEPNPTEEISVASEQEKQDIKVSSTKDNV 138
            ++P T+LPI SS  +    SASNSNT SLLLKKA+ +TR+TK FTCNAFFGLGVPELVVIAGVAALVFGPKKLPEVGRSIG+TVKSFQQAAKEFETELKKEPN TEEISV ++QE QD KVSSTKD+V
Sbjct:   13 ILPRTRLPISSSYSNLSF-SASNSNTTSLLLKKARTRTRSTKRFTCNAFFGLGVPELVVIAGVAALVFGPKKLPEVGRSIGKTVKSFQQAAKEFETELKKEPNSTEEISVTNDQEDQDNKVSSTKDSV 139          
BLAST of Vfaba.Hedin2.R1.3g082320.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6MXB2|A0A2Z6MXB2_TRISU (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_32880 PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.139e-56
Identity = 107/137 (78.10%), Postives = 118/137 (86.13%), Query Frame = 0
Query:    1 MEITLSISSSSVIPTKLPIISSSYSNLSFSASNSNTCSLLLKKAKIKTRTTKSFTCNAFFGLGVPELVVIAGVAALVFGPKKLPEVGRSIGQTVKSFQQAAKEFETELKKEPNPTEEISVASEQEKQDIKVSSTKDN 137
            ME TLS+SSSS IP +LPI SS  S  SF A+N+NT SLLL K ++KTR TK FTC AFFGLGVPELVVIAGVAALVFGPKKLPEVGRSIGQTVKSFQQAAKEFE ELKKEPN  EEISVA+++ +QDIKVSSTKD+
Sbjct:    1 METTLSLSSSSFIP-RLPISSSYSSL-SFLATNANTSSLLLNKGRLKTRRTKGFTCKAFFGLGVPELVVIAGVAALVFGPKKLPEVGRSIGQTVKSFQQAAKEFEIELKKEPNSEEEISVANDKVEQDIKVSSTKDD 135          
BLAST of Vfaba.Hedin2.R1.3g082320.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2XX12|A0A1S2XX12_CICAR (sec-independent protein translocase protein TATA, chloroplastic-like OS=Cicer arietinum OX=3827 GN=LOC101498594 PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.052e-54
Identity = 100/137 (72.99%), Postives = 111/137 (81.02%), Query Frame = 0
Query:    1 MEITLSISSSSVIPTKLPIISSSYSNLSFSASNSNTCSLLLKKAKIKTRTTKSFTCNAFFGLGVPELVVIAGVAALVFGPKKLPEVGRSIGQTVKSFQQAAKEFETELKKEPNPTEEISVASEQEKQDIKVSSTKDN 137
            ME TLS+  SSVI        SS  +   S SN NT S++LKKA+I +R TK FTC AFFGLGVPELVVIAGVAALVFGPKKLPEVGRSIG+TVKSFQQAAKEFETELKKEPN TEEI V S+QE+QDIKVSSTK++
Sbjct:    1 MEATLSLCCSSVIRRLP---LSSSLSFLASKSNYNT-SVVLKKARISSRRTKGFTCKAFFGLGVPELVVIAGVAALVFGPKKLPEVGRSIGKTVKSFQQAAKEFETELKKEPNSTEEIPVTSDQEEQDIKVSSTKED 133          
BLAST of Vfaba.Hedin2.R1.3g082320.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6A4N636|A0A6A4N636_LUPAL (Putative sec-independent protein translocase protein TatA/B/E OS=Lupinus albus OX=3870 GN=Lal_00000157 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 5.375e-47
Identity = 85/141 (60.28%), Postives = 106/141 (75.18%), Query Frame = 0
Query:    4 TLSISSSSVIPTKLPIISSSYSNLSFSASNSNTCSLLLKKAKIKTRTTKSFTCNAFFGLGVPELVVIAGVAALVFGPKKLPEVGRSIGQTVKSFQQAAKEFETELKKEPN-----PTEEISVASEQEKQDIKVSS-TKDNV 138
            +L++SS   IP  L +   S   LSFSASNS   S+  ++++I+ RTTKS TCNA FGLGVPEL VIAGVAAL+FGPK LP+VG + G+T+K FQQAAKEFE+EL+KEPN     PTEE++  SEQ++QD KVSS  KDNV
Sbjct:    5 SLTLSSYCSIPKGLHL---SSHQLSFSASNSK-MSITSRRSRIQIRTTKSLTCNALFGLGVPELAVIAGVAALLFGPKNLPQVGSTFGKTIKGFQQAAKEFESELRKEPNSTDETPTEELTAVSEQQEQDTKVSSNNKDNV 141          
BLAST of Vfaba.Hedin2.R1.3g082320.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2C9VHL9|A0A2C9VHL9_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_08G134600 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 3.675e-46
Identity = 88/149 (59.06%), Postives = 111/149 (74.50%), Query Frame = 0
Query:    1 MEITLSISSSSVIPTKLPIISS-----SYSNLSFSASNSNTCSLLLKKAKIKT-RTTKSFTCNAFFGLGVPELVVIAGVAALVFGPKKLPEVGRSIGQTVKSFQQAAKEFETELKKEPN-----PTEEISVASEQEKQDIKVSSTKDNV 138
            MEI+    S S +P  LP  SS     + S LS++A+NS   SL+L K + +  RT K  TCNA FGLGVPELVVIAGVAALVFGPKKLPEVG+SIG+TVKSFQQAAKEFE+ELKKEP+     P E+ +  SE++KQD++VSS+K+++
Sbjct:    1 MEISSVTLSFSRLPLALPFSSSHSTLFNTSTLSYTANNSINNSLVLGKTRSRNLRTRKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKEPDSLSESPGEKPTAVSEEKKQDVEVSSSKESI 149          
BLAST of Vfaba.Hedin2.R1.3g082320.1 vs. UniProtKB/TrEMBL
Match: tr|A0A067JIF5|A0A067JIF5_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_23495 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.709e-44
Identity = 85/146 (58.22%), Postives = 108/146 (73.97%), Query Frame = 0
Query:    3 ITLSISSSSVIPTKLPIISSS---YSNLSF--SASNSNTCSLLLKKAKIKTRTTKSFTCNAFFGLGVPELVVIAGVAALVFGPKKLPEVGRSIGQTVKSFQQAAKEFETELKKEPN-----PTEEISVASEQEKQDIKVSSTKDNV 138
            ITLS+S     P  LP  SS    +++++F  +  NS   +L+L K +   RT K  TCNA FGLGVPELVVIAGVAALVFGPKKLPEVG+SIG+TVKSFQQAAKEFE+ELKKEP+     P E+ +  SE++KQD+++SSTK++V
Sbjct:    6 ITLSLSRP---PLALPFSSSHSTFFNSVTFLNTTKNSGNSALVLGKTRRTQRTAKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKEPDSLSDSPGEKPTGVSEEKKQDVEISSTKESV 148          
BLAST of Vfaba.Hedin2.R1.3g082320.1 vs. UniProtKB/TrEMBL
Match: tr|A0A5N5H7S3|A0A5N5H7S3_9ROSA (Sec-independent protein translocase protein TATA OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_023612 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.050e-44
Identity = 78/122 (63.93%), Postives = 98/122 (80.33%), Query Frame = 0
Query:   19 IISSSYSNLSFSASNSNTCSLLLKKAKIKT-RTTKSFTCNAFFGLGVPELVVIAGVAALVFGPKKLPEVGRSIGQTVKSFQQAAKEFETELKKEPNP-TEEISVASEQEKQDIKVSSTKDNV 138
            + S+  ++LSFS S  N  +L+L +++ +T R  K  TCNA FGLG+PELVVIAGVAALVFGPKKLPEVG+SIG+TVKSFQQAAKEFETELKKEP   TE  + ASE+EKQ+ KV+S+++N 
Sbjct:   27 LTSNGTTSLSFSKSTVNGSALVLSRSRTRTERAQKGMTCNALFGLGMPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFETELKKEPEGLTETPTAASEEEKQEAKVASSQENA 148          
BLAST of Vfaba.Hedin2.R1.3g082320.1 vs. UniProtKB/TrEMBL
Match: tr|A0A540MTQ2|A0A540MTQ2_MALBA (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_012175 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.423e-44
Identity = 78/122 (63.93%), Postives = 97/122 (79.51%), Query Frame = 0
Query:   19 IISSSYSNLSFSASNSNTCSLLLKKAKIKT-RTTKSFTCNAFFGLGVPELVVIAGVAALVFGPKKLPEVGRSIGQTVKSFQQAAKEFETELKKEPNPTEEI-SVASEQEKQDIKVSSTKDNV 138
            + S+  ++LSFS S  N  +L+L +++ +T R  K  TC A FGLG+PELVVIAGVAALVFGPKKLPEVG+SIG+TVKSFQQAAKEFETELKKEP    EI + ASE+EKQD KV+S+++N 
Sbjct:   27 LTSNGPTSLSFSKSTVNGSALVLSRSRTRTKRAQKGMTCTALFGLGMPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFETELKKEPEGLTEIPTAASEEEKQDAKVASSQENA 148          
BLAST of Vfaba.Hedin2.R1.3g082320.1 vs. UniProtKB/TrEMBL
Match: tr|A0A498K9B3|A0A498K9B3_MALDO (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_015341 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.640e-44
Identity = 78/122 (63.93%), Postives = 96/122 (78.69%), Query Frame = 0
Query:   19 IISSSYSNLSFSASNSNTCSLLLKKAKIKT-RTTKSFTCNAFFGLGVPELVVIAGVAALVFGPKKLPEVGRSIGQTVKSFQQAAKEFETELKKEPNP-TEEISVASEQEKQDIKVSSTKDNV 138
            + S+  ++LSFS S  N  +L+L + + +T R  K  TC A FGLG+PELVVIAGVAALVFGPKKLPEVG+SIG+TVKSFQQAAKEFETELKKEP   TE  + ASE+EKQD KV+S+++N 
Sbjct:   27 LTSNGTTSLSFSKSTVNGSALVLSRRRTRTERAQKGMTCTALFGLGMPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFETELKKEPEGLTETPTAASEEEKQDAKVASSQENA 148          
BLAST of Vfaba.Hedin2.R1.3g082320.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6A4R100|A0A6A4R100_LUPAL (Putative sec-independent protein translocase protein TatA/B/E OS=Lupinus albus OX=3870 GN=Lal_00047714 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.562e-43
Identity = 82/143 (57.34%), Postives = 104/143 (72.73%), Query Frame = 0
Query:    3 ITLSISSSSVIPTKLPIISSSYSNLSFSASN---SNTCSLLLKKAKIKTRTTKSFTCNAFFGLGVPELVVIAGVAALVFGPKKLPEVGRSIGQTVKSFQQAAKEFETELKKEPNPT-----EEISVASEQEKQDIKVSSTKDN 137
            +TL + S S IP +L   SSS S  + + +    S   S++ +K++I+   TKS  CNA FGLGVPEL VIAGVAALVFGPK LP+VGRS G+T+KSFQQAAKEFE+ELKKEP+ T     EE++  +EQ++QD KVSSTKDN
Sbjct:    8 LTLPLHSPSSIPQRLNHSSSSLSFSAINTNRLMKSENMSIITRKSRIQITRTKSLVCNALFGLGVPELAVIAGVAALVFGPKNLPQVGRSFGKTIKSFQQAAKEFESELKKEPSSTNETLAEELTAVTEQQEQDTKVSSTKDN 150          
BLAST of Vfaba.Hedin2.R1.3g082320.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9XH46|TATA_PEA (Sec-independent protein translocase protein TATA, chloroplastic OS=Pisum sativum OX=3888 GN=TATA PE=1 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.344e-72
Identity = 128/138 (92.75%), Postives = 132/138 (95.65%), Query Frame = 0
Query:    1 MEITLSISSSSVIPTKLPIISSSYSNLSFSASNSNTCSLLLKKAKIKTRTTKSFTCNAFFGLGVPELVVIAGVAALVFGPKKLPEVGRSIGQTVKSFQQAAKEFETELKKEPNPTEEISVASEQEKQDIKVSSTKDNV 138
            MEITLSISSSSVIPT+LP  SS YSNLSF +SNSNT SLLLKKA+IKTRTTK FTCNAFFGLGVPELVVIAGVAALVFGPKKLPEVGRSIGQTVKSFQQAAKEFETELKKEPNPTEEISVASEQEKQ+IKVSSTKDNV
Sbjct:    1 MEITLSISSSSVIPTRLPN-SSCYSNLSFLSSNSNTSSLLLKKARIKTRTTKGFTCNAFFGLGVPELVVIAGVAALVFGPKKLPEVGRSIGQTVKSFQQAAKEFETELKKEPNPTEEISVASEQEKQEIKVSSTKDNV 137          
BLAST of Vfaba.Hedin2.R1.3g082320.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9LKU2|TATA_ARATH (Sec-independent protein translocase protein TATA, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TATA PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.481e-34
Identity = 68/110 (61.82%), Postives = 82/110 (74.55%), Query Frame = 0
Query:   35 NTCSLLLKKAKIKTR-TTKSFTCNAFFGLGVPELVVIAGVAALVFGPKKLPEVGRSIGQTVKSFQQAAKEFETELKKEPNPT--EEISVAS---EQEKQDIKVSSTKDNV 138
            NT SL+    +I+   T K  TCNA FGLGVPEL VIAGVAAL+FGPKKLPE+G+SIG+TVKSFQQAAKEFE+ELK EP  +  E   VA+   E+EK+    SS+K+NV
Sbjct:   38 NTRSLVAIGRRIRQEPTRKPLTCNALFGLGVPELAVIAGVAALLFGPKKLPEIGKSIGKTVKSFQQAAKEFESELKTEPEESVAESSQVATSNKEEEKKTEVSSSSKENV 147          
BLAST of Vfaba.Hedin2.R1.3g082320.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q75GK3|TATA_ORYSJ (Sec-independent protein translocase protein TATA, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=TATA PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.685e-32
Identity = 58/89 (65.17%), Postives = 71/89 (79.78%), Query Frame = 0
Query:   56 CNAFFGLGVPELVVIAGVAALVFGPKKLPEVGRSIGQTVKSFQQAAKEFETELKKE-------PNPTEEISVASEQEKQDIKVSSTKDN 137
            C   FGLGVPELVVIAGVAALVFGPK+LPE+GRSIG+TVKSFQQAAKEFETELKKE       P P  E +V+   E+++++ SS+K++
Sbjct:   81 CKCLFGLGVPELVVIAGVAALVFGPKQLPEIGRSIGKTVKSFQQAAKEFETELKKESDDGGDQPPPPTETAVSDGGEEKELEASSSKES 169          
BLAST of Vfaba.Hedin2.R1.3g082320.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9XFJ8|TATA_MAIZE (Sec-independent protein translocase protein TATA, chloroplastic OS=Zea mays OX=4577 GN=TATA PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 6.328e-31
Identity = 56/89 (62.92%), Postives = 67/89 (75.28%), Query Frame = 0
Query:   56 CNAFFGLGVPELVVIAGVAALVFGPKKLPEVGRSIGQTVKSFQQAAKEFETELKKEPN------PTEEISVASEQEKQDIKVSSTKDNV 138
            C   FGLGVPEL VIAGVAALVFGPK+LPE+GRSIG+TVKSFQQAAKEFETELKKEP       P    +  S  E++ ++ SS+K++ 
Sbjct:   82 CKCLFGLGVPELAVIAGVAALVFGPKQLPEIGRSIGKTVKSFQQAAKEFETELKKEPGEGGDQPPPATPTAVSGGEEKGLEASSSKESA 170          
BLAST of Vfaba.Hedin2.R1.3g082320.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q5N2J3|TATA_SYNP6 (Sec-independent protein translocase protein TatA OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=tatA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.867e-20
Identity = 32/53 (60.38%), Postives = 47/53 (88.68%), Query Frame = 0
Query:   59 FFGLGVPELVVIAGVAALVFGPKKLPEVGRSIGQTVKSFQQAAKEFETELKKE 111
            FFG+G+PE++VI  +A LVFGPKKLPE+GRS+G+ ++ FQ A++EFE+E+K+E
Sbjct:    3 FFGIGLPEMLVILAIALLVFGPKKLPEIGRSLGKALRGFQDASREFESEIKRE 55          
BLAST of Vfaba.Hedin2.R1.3g082320.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q31RR1|TATA_SYNE7 (Sec-independent protein translocase protein TatA OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=tatA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.867e-20
Identity = 32/53 (60.38%), Postives = 47/53 (88.68%), Query Frame = 0
Query:   59 FFGLGVPELVVIAGVAALVFGPKKLPEVGRSIGQTVKSFQQAAKEFETELKKE 111
            FFG+G+PE++VI  +A LVFGPKKLPE+GRS+G+ ++ FQ A++EFE+E+K+E
Sbjct:    3 FFGIGLPEMLVILAIALLVFGPKKLPEIGRSLGKALRGFQDASREFESEIKRE 55          
BLAST of Vfaba.Hedin2.R1.3g082320.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q110N2|TATA_TRIEI (Sec-independent protein translocase protein TatA OS=Trichodesmium erythraeum (strain IMS101) OX=203124 GN=tatA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.065e-19
Identity = 37/80 (46.25%), Postives = 57/80 (71.25%), Query Frame = 0
Query:   60 FGLGVPELVVIAGVAALVFGPKKLPEVGRSIGQTVKSFQQAAKEFETELKKEPNPTEE---ISVASEQEKQDIKVSSTKD 136
            FG+G+PE++VI  VA L+FGPKKLPE+GRS+GQ + SF+  A++FE E K+E    EE   +S ++ + ++ + VSS  +
Sbjct:    4 FGIGLPEMIVILVVALLIFGPKKLPEIGRSLGQAINSFKAGARDFENEFKREAKHLEEGVKVSTSASEPEKVVDVSSATN 83          
BLAST of Vfaba.Hedin2.R1.3g082320.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q8DJ44|TATA_THEEB (Sec-independent protein translocase protein TatA OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=tatA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 5.395e-18
Identity = 32/58 (55.17%), Postives = 49/58 (84.48%), Query Frame = 0
Query:   60 FGLGVPELVVIAGVAALVFGPKKLPEVGRSIGQTVKSFQQAAKEFETELKKEPNPTEE 117
            FG+G+PEL+VI  VA L+FGPKKLPE+GRS+G+T ++F++A++EF+ E+K++    EE
Sbjct:    4 FGIGLPELIVILVVALLIFGPKKLPEIGRSLGKTKRAFEEASREFQDEIKRQTAALEE 61          
BLAST of Vfaba.Hedin2.R1.3g082320.1 vs. UniProtKB/Swiss-Prot
Match: sp|A8G311|TATA_PROM2 (Sec-independent protein translocase protein TatA OS=Prochlorococcus marinus (strain MIT 9215) OX=93060 GN=tatA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 2.780e-14
Identity = 28/59 (47.46%), Postives = 45/59 (76.27%), Query Frame = 0
Query:   59 FFGLGVPELVVIAGVAALVFGPKKLPEVGRSIGQTVKSFQQAAKEFETELKKEPNPTEE 117
             FG+G+PE+ VI  +A L+FGPKKLPE+G+ +G+T+KS ++A+ EF+ E+ +  N  +E
Sbjct:    3 IFGVGLPEVTVILILALLIFGPKKLPELGKQLGKTLKSLKKASNEFQNEIDQVMNEEDE 61          
BLAST of Vfaba.Hedin2.R1.3g082320.1 vs. UniProtKB/Swiss-Prot
Match: sp|A2BPF4|TATA_PROMS (Sec-independent protein translocase protein TatA OS=Prochlorococcus marinus (strain AS9601) OX=146891 GN=tatA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 3.258e-14
Identity = 31/74 (41.89%), Postives = 51/74 (68.92%), Query Frame = 0
Query:   59 FFGLGVPELVVIAGVAALVFGPKKLPEVGRSIGQTVKSFQQAAKEFETELKKEPNPTEEISVASEQEKQDIKVS 132
             FG+G+PE+ VI  +A L+FGPKKLPE+G+ +G+T+KS ++A+ EF+ E+ +         V +EQ+K +  +S
Sbjct:    3 IFGVGLPEVTVILILALLIFGPKKLPELGKQLGKTLKSLKKASNEFQNEIDQ---------VMNEQDKDESPIS 67          
BLAST of Vfaba.Hedin2.R1.3g082320.1 vs. Araport11
Match: AT5G28750.1 (| Bacterial sec-independent translocation protein mttA/Hcf106 | Chr5:10784142-10785677 REVERSE LENGTH=147 | 201606)

HSP 1 Score: 119.783 bits (299), Expect = 2.538e-35
Identity = 68/110 (61.82%), Postives = 82/110 (74.55%), Query Frame = 0
Query:   35 NTCSLLLKKAKIKTR-TTKSFTCNAFFGLGVPELVVIAGVAALVFGPKKLPEVGRSIGQTVKSFQQAAKEFETELKKEPNPT--EEISVAS---EQEKQDIKVSSTKDNV 138
            NT SL+    +I+   T K  TCNA FGLGVPEL VIAGVAAL+FGPKKLPE+G+SIG+TVKSFQQAAKEFE+ELK EP  +  E   VA+   E+EK+    SS+K+NV
Sbjct:   38 NTRSLVAIGRRIRQEPTRKPLTCNALFGLGVPELAVIAGVAALLFGPKKLPEIGKSIGKTVKSFQQAAKEFESELKTEPEESVAESSQVATSNKEEEKKTEVSSSSKENV 147          
BLAST of Vfaba.Hedin2.R1.3g082320.1 vs. Araport11
Match: AT5G52440.1 (| Bacterial sec-independent translocation protein mttA/Hcf106 | Chr5:21286896-21288613 FORWARD LENGTH=260 | 201606)

HSP 1 Score: 59.6918 bits (143), Expect = 2.515e-11
Identity = 29/60 (48.33%), Postives = 39/60 (65.00%), Query Frame = 0
Query:   47 KTRTTKSFTCNA-FFGLGVPELVVIAGVAALVFGPKKLPEVGRSIGQTVKSFQQAAKEFE 105
            K R  KS    A  FG+G PE +VI  VA LVFGPK L EV R++G+T+++FQ   +E +
Sbjct:   73 KKRRCKSMMIRASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRTFQPTIRELQ 132          
The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.3g082320.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|B7FMF0|B7FMF0_MEDTR2.186e-6079.69Sec-independent protein translocase protein TATA O... [more]
tr|A0A2Z6MXB2|A0A2Z6MXB2_TRISU1.139e-5678.10Uncharacterized protein OS=Trifolium subterraneum ... [more]
tr|A0A1S2XX12|A0A1S2XX12_CICAR1.052e-5472.99sec-independent protein translocase protein TATA, ... [more]
tr|A0A6A4N636|A0A6A4N636_LUPAL5.375e-4760.28Putative sec-independent protein translocase prote... [more]
tr|A0A2C9VHL9|A0A2C9VHL9_MANES3.675e-4659.06Uncharacterized protein OS=Manihot esculenta OX=39... [more]
tr|A0A067JIF5|A0A067JIF5_JATCU1.709e-4458.22Uncharacterized protein OS=Jatropha curcas OX=1804... [more]
tr|A0A5N5H7S3|A0A5N5H7S3_9ROSA3.050e-4463.93Sec-independent protein translocase protein TATA O... [more]
tr|A0A540MTQ2|A0A540MTQ2_MALBA4.423e-4463.93Uncharacterized protein OS=Malus baccata OX=106549... [more]
tr|A0A498K9B3|A0A498K9B3_MALDO7.640e-4463.93Uncharacterized protein OS=Malus domestica OX=3750... [more]
tr|A0A6A4R100|A0A6A4R100_LUPAL1.562e-4357.34Putative sec-independent protein translocase prote... [more]
back to top
BLAST of Vfaba.Hedin2.R1.3g082320.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
sp|Q9XH46|TATA_PEA2.344e-7292.75Sec-independent protein translocase protein TATA, ... [more]
sp|Q9LKU2|TATA_ARATH2.481e-3461.82Sec-independent protein translocase protein TATA, ... [more]
sp|Q75GK3|TATA_ORYSJ1.685e-3265.17Sec-independent protein translocase protein TATA, ... [more]
sp|Q9XFJ8|TATA_MAIZE6.328e-3162.92Sec-independent protein translocase protein TATA, ... [more]
sp|Q5N2J3|TATA_SYNP64.867e-2060.38Sec-independent protein translocase protein TatA O... [more]
sp|Q31RR1|TATA_SYNE74.867e-2060.38Sec-independent protein translocase protein TatA O... [more]
sp|Q110N2|TATA_TRIEI1.065e-1946.25Sec-independent protein translocase protein TatA O... [more]
sp|Q8DJ44|TATA_THEEB5.395e-1855.17Sec-independent protein translocase protein TatA O... [more]
sp|A8G311|TATA_PROM22.780e-1447.46Sec-independent protein translocase protein TatA O... [more]
sp|A2BPF4|TATA_PROMS3.258e-1441.89Sec-independent protein translocase protein TatA O... [more]
back to top
BLAST of Vfaba.Hedin2.R1.3g082320.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11)
Total hits: 2
Match NameE-valueIdentityDescription
AT5G28750.12.538e-3561.82| Bacterial sec-independent translocation protein ... [more]
AT5G52440.12.515e-1148.33| Bacterial sec-independent translocation protein ... [more]
back to top
InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01506TATBPROTEINcoord: 59..79
score: 35.96
coord: 79..98
score: 28.89
coord: 98..116
score: 24.35
NoneNo IPR availableGENE3D1.20.5.3310coord: 61..111
e-value: 7.2E-19
score: 69.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 105..138
NoneNo IPR availablePANTHERPTHR33162SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATA, CHLOROPLASTICcoord: 16..122
IPR003369Sec-independent protein translocase protein TatA/B/EPFAMPF02416TatA_B_Ecoord: 62..111
e-value: 8.0E-20
score: 69.9
IPR006312Sec-independent protein translocase protein TatA/ETIGRFAMTIGR01411TIGR01411coord: 61..107
e-value: 3.6E-20
score: 69.3
IPR006312Sec-independent protein translocase protein TatA/EHAMAPMF_00236TatA_Ecoord: 59..128
score: 18.483635

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vfaba.Hedin2.R1.3g082320.1_vfh_v1 ID=Vfaba.Hedin2.R1.3g082320.1_vfh_v1; Name=Vfaba.Hedin2.R1.3g082320.1; organism=Vicia faba; type=mRNA; length=417bp
ATGGAGATAACACTTTCCATTTCTTCATCTTCAGTTATTCCGACTAAGCT
ACCAATAATCTCTTCATCCTATTCCAATTTATCCTTCTCAGCTTCCAACT
CTAACACTTGCTCACTTCTCTTGAAGAAAGCCAAAATCAAAACCAGAACA
ACAAAGAGTTTCACTTGCAATGCATTCTTCGGTCTAGGTGTGCCTGAGCT
TGTGGTTATTGCAGGAGTTGCTGCTCTTGTTTTCGGTCCCAAGAAACTGC
CCGAAGTCGGTCGCAGCATCGGCCAAACTGTCAAAAGCTTTCAACAGGCA
GCAAAGGAATTTGAGACAGAGCTAAAAAAGGAACCAAATCCTACAGAAGA
AATCTCTGTTGCGAGTGAGCAAGAGAAGCAAGACATTAAGGTTTCTAGTA
CAAAGGATAATGTATGA
back to top

protein sequence of Vfaba.Hedin2.R1.3g082320.1_vfh_v1

>Vfaba.Hedin2.R1.3g082320.1_vfh_v1 ID=Vfaba.Hedin2.R1.3g082320.1_vfh_v1; Name=Vfaba.Hedin2.R1.3g082320.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=138bp
MEITLSISSSSVIPTKLPIISSSYSNLSFSASNSNTCSLLLKKAKIKTRT
TKSFTCNAFFGLGVPELVVIAGVAALVFGPKKLPEVGRSIGQTVKSFQQA
AKEFETELKKEPNPTEEISVASEQEKQDIKVSSTKDNV
back to top

mRNA from alignment at chr3:507546908..507547458-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vfaba.Hedin2.R1.3g082320.1_vfh_v1 ID=Vfaba.Hedin2.R1.3g082320.1_vfh_v1; Name=Vfaba.Hedin2.R1.3g082320.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr3:507546908..507547458- (Vicia faba
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR003369TatA/B/E
IPR006312TatA/E
Vocabulary: Biological Process
TermDefinition
GO:0015031protein transport
GO:0043953protein transport by the Tat complex
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane