Vfaba.Hedin2.R1.3g085560.1

Transcript Overview
NameVfaba.Hedin2.R1.3g085560.1
Unique NameVfaba.Hedin2.R1.3g085560.1_vfh_v1
TypemRNA
OrganismVicia faba (Faba bean)
Sequence length414
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr3chromosomechr3:525423237..525423650 +Vicia faba inbred line Hedin/2 genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vfhzwsR275Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vfhzwsR302Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vfhzwsR346Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
asvfhL224Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvfhL225Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvfhL297Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvfhL302Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cavfhL207Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavfhL286Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavfhL323Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvfhL0634Cajanus cajan Asha genome v1.0Cajanus cajan
ccvfhL0767Cajanus cajan Asha genome v1.0Cajanus cajan
ccvfhL0771Cajanus cajan Asha genome v1.0Cajanus cajan
crvfhL340Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crvfhL356Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crvfhL397Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
vfhvfhR183Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvfhL220Vicia faba cv. Tiffany genome v1.0Vicia faba
tifvfhL347Vicia faba cv. Tiffany genome v1.0Vicia faba
caivfhL243Cicer arietinum ICC 4958 genome v2Cicer arietinum
caivfhL351Cicer arietinum ICC 4958 genome v2Cicer arietinum
caivfhL437Cicer arietinum ICC 4958 genome v2Cicer arietinum
anvfhL0431Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL0622Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL0669Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL0678Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL1138Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL1156Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
vfhvrvR323Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvrvR324Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvrvR406Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvrvR425Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvssR370Vicia sativa cv. Studenica genome v1.0Vicia sativa
vfhvssR402Vicia sativa cv. Studenica genome v1.0Vicia sativa
vfhvssR423Vicia sativa cv. Studenica genome v1.0Vicia sativa
canvfhL176Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvfhL239Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvfhL279Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvfhL158Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvfhL159Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvfhL370Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvfhL386Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
vfhvumR392Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvumR435Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvumR512Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvumR516Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvvaR350Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vfhvvaR351Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vfhvvaR462Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vasvfhL528Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvfhL531Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvfhL697Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvfhL738Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvfvfhL542Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvfhL543Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvfhL585Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvfhL612Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.3g085560Vfaba.Hedin2.R1.3g085560_vfh_v1Vicia fabagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.3g085560.1_vfh_v1-exonVfaba.Hedin2.R1.3g085560.1_vfh_v1-exon-chr3_vfh_v1:525423237..525423650Vicia fabaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.3g085560.1_vfh_v1-cdsVfaba.Hedin2.R1.3g085560.1_vfh_v1-cds-chr3_vfh_v1:525423237..525423650Vicia fabaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.3g085560.1_vfh_v1Vfaba.Hedin2.R1.3g085560.1_vfh_v1Vicia fabapolypeptide
Vfaba.Hedin2.R1.3g085560.1_vfh_v1Vfaba.Hedin2.R1.3g085560.1_vfh_v1-proteinVicia fabapolypeptide


Homology
[Close]
BLAST of Vfaba.Hedin2.R1.3g085560.1 vs. UniProtKB/TrEMBL
Match: tr|A0A151SQ10|A0A151SQ10_CAJCA (Retrovirus-related Pol polyprotein from transposon 17.6 (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_003165 PE=4 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 1.262e-64
Identity = 96/136 (70.59%), Postives = 111/136 (81.62%), Query Frame = 0 
Query:    1 MVTKGIVLGHKISAKEIDVDQAKVDVIKKLPPPINVKGIREFLGHAGFYRRFIKDFSKIVNPLSNLLNKDRSFNFDKYCLTTFENIKEKLSTAPVITAPDWKINFELMCDASDYAVGVILGYRKTKTFMLYTMRSK 136
            MVT+GIVLGHKIS K I+VD AKV+VI+KLPPPINVKGIR FLGHAGF+RR+IKDFS I  PL NLLNKD  F F+ YCL  FE +K +L+ AP+ITAPDWK++FELMCDASDYAVG +LG R+TKTF      SK
Sbjct:    8 MVTEGIVLGHKISHKGIEVDPAKVEVIEKLPPPINVKGIRSFLGHAGFFRRYIKDFSMIARPLGNLLNKDTPFCFNDYCLKAFEALKARLTFAPIITAPDWKLDFELMCDASDYAVGAVLGQRRTKTFHAIHYASK 143
[Close]
BLAST of Vfaba.Hedin2.R1.3g085560.1 vs. UniProtKB/TrEMBL
Match: tr|A0A151SNF0|A0A151SNF0_CAJCA (Retrovirus-related Pol polyprotein from transposon opus OS=Cajanus cajan OX=3821 GN=KK1_002525 PE=4 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.896e-63
Identity = 91/136 (66.91%), Postives = 109/136 (80.15%), Query Frame = 0 
Query:    1 MVTKGIVLGHKISAKEIDVDQAKVDVIKKLPPPINVKGIREFLGHAGFYRRFIKDFSKIVNPLSNLLNKDRSFNFDKYCLTTFENIKEKLSTAPVITAPDWKINFELMCDASDYAVGVILGYRKTKTFMLYTMRSK 136
            MVT+GIVLGHKIS + I+VD+AK++VI+KLPPP+NVKGIR FLGH GFYRRFIKDFSKI  PLSNLLNKD  F FD  CL++FE +K KL +AP+IT P+W+  FELMCDASDYA+G +L  RK K F +    SK
Sbjct:    1 MVTEGIVLGHKISCRGIEVDKAKIEVIEKLPPPVNVKGIRSFLGHVGFYRRFIKDFSKIAKPLSNLLNKDTPFKFDANCLSSFETLKNKLISAPMITTPNWQFGFELMCDASDYAIGAVLAQRKEKVFRVIHYASK 136
[Close]
BLAST of Vfaba.Hedin2.R1.3g085560.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3MZL1|A0A2K3MZL1_TRIPR (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g019419 PE=4 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.044e-63
Identity = 101/137 (73.72%), Postives = 116/137 (84.67%), Query Frame = 0 
Query:    1 MVTKGIVLGHKISAKEIDVDQAKVDVIKKLPPPINVKGIREFLGHAGFYRRFIKDFSKIVNPLSNLLNKDRSFNFDKYCLTTFENIKEKLSTAPVITAPDWKINFELMCDASDYAVGVILGYRKTKTFMLYTMRSKS 137
            M+T+GIVLGHKIS+K I+VD+AKV+VI+KLPPP+NVKGIR FLGHAGFYRRFIKDFSKI  PLSNLLNKD+SFNFD  CL+ F N+KEKL TAP+I APDWK+ FELMCDASDYAVG +LG RK K F      SK+
Sbjct:  892 MMTEGIVLGHKISSKGIEVDKAKVEVIEKLPPPVNVKGIRSFLGHAGFYRRFIKDFSKIAKPLSNLLNKDKSFNFDDECLSAFNNLKEKLITAPIIIAPDWKLEFELMCDASDYAVGAVLGQRKNKIFHAIHYASKT 1028
[Close]
BLAST of Vfaba.Hedin2.R1.3g085560.1 vs. UniProtKB/TrEMBL
Match: tr|A0A151R499|A0A151R499_CAJCA (Retrovirus-related Pol polyprotein from transposon 17.6 (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_041393 PE=4 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 6.768e-63
Identity = 95/128 (74.22%), Postives = 110/128 (85.94%), Query Frame = 0 
Query:    1 MVTKGIVLGHKISAKEIDVDQAKVDVIKKLPPPINVKGIREFLGHAGFYRRFIKDFSKIVNPLSNLLNKDRSFNFDKYCLTTFENIKEKLSTAPVITAPDWKINFELMCDASDYAVGVILGYRKTKTF 128
            MVT+GIVLGHKIS K I+VD AKV+VI+KLPPPINV+GIR FLGHAGFYRRFIKDFS I  PLSNLLNKD  F F+  CL  FE +K +L++AP+ITAPDWK++FELMCDASDYAVGV+LG R+ KTF
Sbjct:    8 MVTEGIVLGHKISHKGIEVDLAKVEVIEKLPPPINVRGIRSFLGHAGFYRRFIKDFSMIARPLSNLLNKDTPFCFNDSCLKAFETLKARLTSAPIITAPDWKLDFELMCDASDYAVGVVLGQRRAKTF 135
[Close]
BLAST of Vfaba.Hedin2.R1.3g085560.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3PB15|A0A2K3PB15_TRIPR (Reverse transcriptase OS=Trifolium pratense OX=57577 GN=L195_g009111 PE=4 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.867e-62
Identity = 100/136 (73.53%), Postives = 115/136 (84.56%), Query Frame = 0 
Query:    1 MVTKGIVLGHKISAKEIDVDQAKVDVIKKLPPPINVKGIREFLGHAGFYRRFIKDFSKIVNPLSNLLNKDRSFNFDKYCLTTFENIKEKLSTAPVITAPDWKINFELMCDASDYAVGVILGYRKTKTFMLYTMRSK 136
            MVT+GIVLGHKIS+K I+VD+AKV+VI+KLPPP+NVKGIR FLGHAGFYRRFIKDFSKI  PLSNLLNKD+ FNFD  CL  F ++KEKL+TAP+ITAPDW ++FELMCDASDYAVG +LG RK K F      SK
Sbjct: 1181 MVTEGIVLGHKISSKGIEVDKAKVEVIEKLPPPVNVKGIRSFLGHAGFYRRFIKDFSKIAKPLSNLLNKDKPFNFDNACLLAFNDLKEKLTTAPIITAPDWSLDFELMCDASDYAVGAVLGQRKNKIFHAIHYASK 1316
[Close]
BLAST of Vfaba.Hedin2.R1.3g085560.1 vs. UniProtKB/TrEMBL
Match: tr|A0A151S5B2|A0A151S5B2_CAJCA (Retrovirus-related Pol polyprotein from transposon opus OS=Cajanus cajan OX=3821 GN=KK1_028268 PE=4 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 2.479e-62
Identity = 94/136 (69.12%), Postives = 110/136 (80.88%), Query Frame = 0 
Query:    1 MVTKGIVLGHKISAKEIDVDQAKVDVIKKLPPPINVKGIREFLGHAGFYRRFIKDFSKIVNPLSNLLNKDRSFNFDKYCLTTFENIKEKLSTAPVITAPDWKINFELMCDASDYAVGVILGYRKTKTFMLYTMRSK 136
            MVT+GIVLGHKIS + I+VD+AK++VI+KLPPP+NVKGIR FLGHAGFYRRFIKDFSKI  PLSNLLNKD  F FD  CL+ FE +K KL +APVITAP+W+  FELMCDASDYA+G +L  RK K F +    SK
Sbjct:   56 MVTEGIVLGHKISCRGIEVDKAKIEVIEKLPPPVNVKGIRSFLGHAGFYRRFIKDFSKIAKPLSNLLNKDTPFKFDANCLSAFETLKNKLISAPVITAPNWQFGFELMCDASDYAIGAVLCQRKEKVFHVIHYASK 191
[Close]
BLAST of Vfaba.Hedin2.R1.3g085560.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3NPD0|A0A2K3NPD0_TRIPR (Reverse transcriptase OS=Trifolium pratense OX=57577 GN=L195_g001324 PE=4 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 3.064e-62
Identity = 100/136 (73.53%), Postives = 116/136 (85.29%), Query Frame = 0 
Query:    1 MVTKGIVLGHKISAKEIDVDQAKVDVIKKLPPPINVKGIREFLGHAGFYRRFIKDFSKIVNPLSNLLNKDRSFNFDKYCLTTFENIKEKLSTAPVITAPDWKINFELMCDASDYAVGVILGYRKTKTFMLYTMRSK 136
            MVT+GIVLGHKIS+K I+VD+AKV+VI+KLPPPIN+KGIR FLGHAGFYRRFIKDFSKI  PLSNLLNKD+ FNFDK CL  F ++KE+L+TAP+ITAPDW ++FELMCDASDYAVG +LG RK K F      SK
Sbjct:  703 MVTEGIVLGHKISSKGIEVDKAKVEVIEKLPPPINIKGIRSFLGHAGFYRRFIKDFSKIAKPLSNLLNKDKPFNFDKSCLIAFNDLKERLTTAPIITAPDWSLDFELMCDASDYAVGAVLGQRKNKFFHAIHYASK 838
[Close]
BLAST of Vfaba.Hedin2.R1.3g085560.1 vs. UniProtKB/TrEMBL
Match: tr|A0A151RWI8|A0A151RWI8_CAJCA (Retrovirus-related Pol polyprotein from transposon 17.6 (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_031494 PE=4 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.544e-62
Identity = 94/136 (69.12%), Postives = 109/136 (80.15%), Query Frame = 0 
Query:    1 MVTKGIVLGHKISAKEIDVDQAKVDVIKKLPPPINVKGIREFLGHAGFYRRFIKDFSKIVNPLSNLLNKDRSFNFDKYCLTTFENIKEKLSTAPVITAPDWKINFELMCDASDYAVGVILGYRKTKTFMLYTMRSK 136
            MVT+GIVLGHKIS K I+VD AKV+VI+KLPPPINVKGIR FLGH GFYRRFIKDFS I  PLSNLLNKD  F F+  C+  FE +K +L++AP+ITAPDW ++FELMCDASDYAVG +LG R+TK F      SK
Sbjct:   58 MVTEGIVLGHKISHKGIEVDPAKVEVIEKLPPPINVKGIRSFLGHVGFYRRFIKDFSMIARPLSNLLNKDTPFCFNDSCMKAFEALKARLTSAPIITAPDWTLDFELMCDASDYAVGAVLGQRRTKIFHAIHYASK 193
[Close]
BLAST of Vfaba.Hedin2.R1.3g085560.1 vs. UniProtKB/TrEMBL
Match: tr|A0A151QS57|A0A151QS57_CAJCA (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cajanus cajan OX=3821 GN=KK1_046024 PE=4 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 8.211e-62
Identity = 95/136 (69.85%), Postives = 110/136 (80.88%), Query Frame = 0 
Query:    1 MVTKGIVLGHKISAKEIDVDQAKVDVIKKLPPPINVKGIREFLGHAGFYRRFIKDFSKIVNPLSNLLNKDRSFNFDKYCLTTFENIKEKLSTAPVITAPDWKINFELMCDASDYAVGVILGYRKTKTFMLYTMRSK 136
            MVT+GIVLGHKIS K I+VD AKV+VI+KL PPINV+GIR FLGHAGFYRRFIKDFS I  PLSNLLNKD  F F+  CL  FE +K +L++AP+ITAPDWK++FELMCDASDYAVG +LG R+ KTF      SK
Sbjct:   71 MVTEGIVLGHKISHKGIEVDPAKVEVIEKLLPPINVRGIRSFLGHAGFYRRFIKDFSMIARPLSNLLNKDTPFCFNDSCLKAFEALKARLTSAPIITAPDWKLDFELMCDASDYAVGAVLGQRRAKTFHAIHYASK 206
[Close]
BLAST of Vfaba.Hedin2.R1.3g085560.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6LPV5|A0A2Z6LPV5_TRISU (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_273190 PE=4 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 1.102e-61
Identity = 98/136 (72.06%), Postives = 114/136 (83.82%), Query Frame = 0 
Query:    1 MVTKGIVLGHKISAKEIDVDQAKVDVIKKLPPPINVKGIREFLGHAGFYRRFIKDFSKIVNPLSNLLNKDRSFNFDKYCLTTFENIKEKLSTAPVITAPDWKINFELMCDASDYAVGVILGYRKTKTFMLYTMRSK 136
            MVT+GIVLGHKIS+K I+VD+AK++VI+KLPPP+NVKGIR FLGHAGFYRRFIKDFSKI  PLSNLLNKD+SFNFD  CL  F ++KE+L TAP+I APDW ++FELMCDASDYAVG +LG RK K F      SK
Sbjct: 1648 MVTEGIVLGHKISSKGIEVDKAKIEVIEKLPPPVNVKGIRSFLGHAGFYRRFIKDFSKIAKPLSNLLNKDKSFNFDHSCLIAFNDLKERLVTAPIIIAPDWSLHFELMCDASDYAVGAVLGQRKNKVFHAIHYASK 1783
[Close]
BLAST of Vfaba.Hedin2.R1.3g085560.1 vs. UniProtKB/Swiss-Prot
Match: sp|P92523|M860_ARATH (Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 GN=AtMg00860 PE=4 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.613e-18
Identity = 39/100 (39.00%), Postives = 60/100 (60.00%), Query Frame = 0 
Query:    8 LGHK--ISAKEIDVDQAKVDVIKKLPPPINVKGIREFLGHAGFYRRFIKDFSKIVNPLSNLLNKDRSFNFDKYCLTTFENIKEKLSTAPVITAPDWKINF 105
            LGH+  IS + +  D AK++ +   P P N   +R FLG  G+YRRF+K++ KIV PL+ LL K+ S  + +     F+ +K  ++T PV+  PD K+ F
Sbjct:   33 LGHRHIISGEGVSADPAKLEAMVGWPEPKNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKN-SLKWTEMAALAFKALKGAVTTLPVLALPDLKLPF 131
[Close]
BLAST of Vfaba.Hedin2.R1.3g085560.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q8I7P9|POL5_DROME (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.224e-17
Identity = 41/125 (32.80%), Postives = 71/125 (56.80%), Query Frame = 0 
Query:    8 LGHKISAKEIDVDQAKVDVIKKLPPPINVKGIREFLGHAGFYRRFIKDFSKIVNPLSNL-------LNKDRS----FNFDKYCLTTFENIKEKLSTAPVITAPDWKINFELMCDASDYAVGVILG 121
            LG+ ++A  I  D  KV  I ++PPP +VK ++ FLG   +YR+FI+D++K+  PL+NL       +   +S       D+  L +F ++K  L ++ ++  P +   F L  DAS++A+G +L 
Sbjct:  327 LGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFPCFTKPFHLTTDASNWAIGAVLS 451
[Close]
BLAST of Vfaba.Hedin2.R1.3g085560.1 vs. UniProtKB/Swiss-Prot
Match: sp|P04323|POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.950e-15
Identity = 40/119 (33.61%), Postives = 65/119 (54.62%), Query Frame = 0 
Query:    8 LGHKISAKEIDVDQAKVDVIKKLPPPINVKGIREFLGHAGFYRRFIKDFSKIVNPLSNLLNKDRSFN-----FDKYCLTTFENIKEKLSTAPVITAPDWKINFELMCDASDYAVGVILG 121
            LGH ++   I  +  K++ I+K P P   K I+ FLG  G+YR+FI +F+ I  P++  L K+   +     +D    + F+ +K  +S  P++  PD+   F L  DASD A+G +L 
Sbjct:  411 LGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYD----SAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVLS 525
[Close]
BLAST of Vfaba.Hedin2.R1.3g085560.1 vs. UniProtKB/Swiss-Prot
Match: sp|P0CT39|TF26_SCHPO (Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-6 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.442e-15
Identity = 41/116 (35.34%), Postives = 62/116 (53.45%), Query Frame = 0 
Query:    8 LGHKISAKEIDVDQAKVDVIKKLPPPINVKGIREFLGHAGFYRRFIKDFSKIVNPLSNLLNKDRSFNFDKYCLTTFENIKEKLSTAPVITAPDWKINFELMCDASDYAVGVILGYR 123
            +G+ IS K     Q  +D + +   P N K +R+FLG   + R+FI   S++ +PL+NLL KD  + +        ENIK+ L + PV+   D+     L  DASD AVG +L  +
Sbjct:  611 IGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQK 726
[Close]
BLAST of Vfaba.Hedin2.R1.3g085560.1 vs. UniProtKB/Swiss-Prot
Match: sp|P0CT38|TF25_SCHPO (Transposon Tf2-5 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-5 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.442e-15
Identity = 41/116 (35.34%), Postives = 62/116 (53.45%), Query Frame = 0 
Query:    8 LGHKISAKEIDVDQAKVDVIKKLPPPINVKGIREFLGHAGFYRRFIKDFSKIVNPLSNLLNKDRSFNFDKYCLTTFENIKEKLSTAPVITAPDWKINFELMCDASDYAVGVILGYR 123
            +G+ IS K     Q  +D + +   P N K +R+FLG   + R+FI   S++ +PL+NLL KD  + +        ENIK+ L + PV+   D+     L  DASD AVG +L  +
Sbjct:  611 IGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQK 726
[Close]
BLAST of Vfaba.Hedin2.R1.3g085560.1 vs. UniProtKB/Swiss-Prot
Match: sp|P0CT36|TF23_SCHPO (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.442e-15
Identity = 41/116 (35.34%), Postives = 62/116 (53.45%), Query Frame = 0 
Query:    8 LGHKISAKEIDVDQAKVDVIKKLPPPINVKGIREFLGHAGFYRRFIKDFSKIVNPLSNLLNKDRSFNFDKYCLTTFENIKEKLSTAPVITAPDWKINFELMCDASDYAVGVILGYR 123
            +G+ IS K     Q  +D + +   P N K +R+FLG   + R+FI   S++ +PL+NLL KD  + +        ENIK+ L + PV+   D+     L  DASD AVG +L  +
Sbjct:  611 IGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQK 726
[Close]
BLAST of Vfaba.Hedin2.R1.3g085560.1 vs. UniProtKB/Swiss-Prot
Match: sp|P0CT41|TF212_SCHPO (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.442e-15
Identity = 41/116 (35.34%), Postives = 62/116 (53.45%), Query Frame = 0 
Query:    8 LGHKISAKEIDVDQAKVDVIKKLPPPINVKGIREFLGHAGFYRRFIKDFSKIVNPLSNLLNKDRSFNFDKYCLTTFENIKEKLSTAPVITAPDWKINFELMCDASDYAVGVILGYR 123
            +G+ IS K     Q  +D + +   P N K +R+FLG   + R+FI   S++ +PL+NLL KD  + +        ENIK+ L + PV+   D+     L  DASD AVG +L  +
Sbjct:  611 IGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQK 726
[Close]
BLAST of Vfaba.Hedin2.R1.3g085560.1 vs. UniProtKB/Swiss-Prot
Match: sp|P0CT40|TF29_SCHPO (Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-9 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.504e-15
Identity = 41/116 (35.34%), Postives = 62/116 (53.45%), Query Frame = 0 
Query:    8 LGHKISAKEIDVDQAKVDVIKKLPPPINVKGIREFLGHAGFYRRFIKDFSKIVNPLSNLLNKDRSFNFDKYCLTTFENIKEKLSTAPVITAPDWKINFELMCDASDYAVGVILGYR 123
            +G+ IS K     Q  +D + +   P N K +R+FLG   + R+FI   S++ +PL+NLL KD  + +        ENIK+ L + PV+   D+     L  DASD AVG +L  +
Sbjct:  611 IGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQK 726
[Close]
BLAST of Vfaba.Hedin2.R1.3g085560.1 vs. UniProtKB/Swiss-Prot
Match: sp|P0CT37|TF24_SCHPO (Transposon Tf2-4 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-4 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.504e-15
Identity = 41/116 (35.34%), Postives = 62/116 (53.45%), Query Frame = 0 
Query:    8 LGHKISAKEIDVDQAKVDVIKKLPPPINVKGIREFLGHAGFYRRFIKDFSKIVNPLSNLLNKDRSFNFDKYCLTTFENIKEKLSTAPVITAPDWKINFELMCDASDYAVGVILGYR 123
            +G+ IS K     Q  +D + +   P N K +R+FLG   + R+FI   S++ +PL+NLL KD  + +        ENIK+ L + PV+   D+     L  DASD AVG +L  +
Sbjct:  611 IGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQK 726
[Close]
BLAST of Vfaba.Hedin2.R1.3g085560.1 vs. UniProtKB/Swiss-Prot
Match: sp|P0CT35|TF22_SCHPO (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.504e-15
Identity = 41/116 (35.34%), Postives = 62/116 (53.45%), Query Frame = 0 
Query:    8 LGHKISAKEIDVDQAKVDVIKKLPPPINVKGIREFLGHAGFYRRFIKDFSKIVNPLSNLLNKDRSFNFDKYCLTTFENIKEKLSTAPVITAPDWKINFELMCDASDYAVGVILGYR 123
            +G+ IS K     Q  +D + +   P N K +R+FLG   + R+FI   S++ +PL+NLL KD  + +        ENIK+ L + PV+   D+     L  DASD AVG +L  +
Sbjct:  611 IGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQK 726
[Close]
BLAST of Vfaba.Hedin2.R1.3g085560.1 vs. Araport11
Match: ATMG00860.1 (| DNA/RNA polymerases superfamily protein | ChrM:235916-236392 FORWARD LENGTH=158 | 201606)

HSP 1 Score: 78.1814 bits (191), Expect = 5.743e-19
Identity = 39/100 (39.00%), Postives = 60/100 (60.00%), Query Frame = 0 
Query:    8 LGHK--ISAKEIDVDQAKVDVIKKLPPPINVKGIREFLGHAGFYRRFIKDFSKIVNPLSNLLNKDRSFNFDKYCLTTFENIKEKLSTAPVITAPDWKINF 105
            LGH+  IS + +  D AK++ +   P P N   +R FLG  G+YRRF+K++ KIV PL+ LL K+ S  + +     F+ +K  ++T PV+  PD K+ F
Sbjct:   33 LGHRHIISGEGVSADPAKLEAMVGWPEPKNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKN-SLKWTEMAALAFKALKGAVTTLPVLALPDLKLPF 131
The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.3g085560.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A151SQ10|A0A151SQ10_CAJCA1.262e-6470.59Retrovirus-related Pol polyprotein from transposon... [more]
tr|A0A151SNF0|A0A151SNF0_CAJCA3.896e-6366.91Retrovirus-related Pol polyprotein from transposon... [more]
tr|A0A2K3MZL1|A0A2K3MZL1_TRIPR4.044e-6373.72Uncharacterized protein OS=Trifolium pratense OX=5... [more]
tr|A0A151R499|A0A151R499_CAJCA6.768e-6374.22Retrovirus-related Pol polyprotein from transposon... [more]
tr|A0A2K3PB15|A0A2K3PB15_TRIPR1.867e-6273.53Reverse transcriptase OS=Trifolium pratense OX=575... [more]
tr|A0A151S5B2|A0A151S5B2_CAJCA2.479e-6269.12Retrovirus-related Pol polyprotein from transposon... [more]
tr|A0A2K3NPD0|A0A2K3NPD0_TRIPR3.064e-6273.53Reverse transcriptase OS=Trifolium pratense OX=575... [more]
tr|A0A151RWI8|A0A151RWI8_CAJCA4.544e-6269.12Retrovirus-related Pol polyprotein from transposon... [more]
tr|A0A151QS57|A0A151QS57_CAJCA8.211e-6269.85Retrovirus-related Pol polyprotein from transposon... [more]
tr|A0A2Z6LPV5|A0A2Z6LPV5_TRISU1.102e-6172.06Uncharacterized protein OS=Trifolium subterraneum ... [more]
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BLAST of Vfaba.Hedin2.R1.3g085560.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
sp|P92523|M860_ARATH5.613e-1839.00Uncharacterized mitochondrial protein AtMg00860 OS... [more]
sp|Q8I7P9|POL5_DROME1.224e-1732.80Retrovirus-related Pol polyprotein from transposon... [more]
sp|P04323|POL3_DROME2.950e-1533.61Retrovirus-related Pol polyprotein from transposon... [more]
sp|P0CT39|TF26_SCHPO6.442e-1535.34Transposon Tf2-6 polyprotein OS=Schizosaccharomyce... [more]
sp|P0CT38|TF25_SCHPO6.442e-1535.34Transposon Tf2-5 polyprotein OS=Schizosaccharomyce... [more]
sp|P0CT36|TF23_SCHPO6.442e-1535.34Transposon Tf2-3 polyprotein OS=Schizosaccharomyce... [more]
sp|P0CT41|TF212_SCHPO6.442e-1535.34Transposon Tf2-12 polyprotein OS=Schizosaccharomyc... [more]
sp|P0CT40|TF29_SCHPO6.504e-1535.34Transposon Tf2-9 polyprotein OS=Schizosaccharomyce... [more]
sp|P0CT37|TF24_SCHPO6.504e-1535.34Transposon Tf2-4 polyprotein OS=Schizosaccharomyce... [more]
sp|P0CT35|TF22_SCHPO6.504e-1535.34Transposon Tf2-2 polyprotein OS=Schizosaccharomyce... [more]
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BLAST of Vfaba.Hedin2.R1.3g085560.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11)
Total hits: 1
Match NameE-valueIdentityDescription
ATMG00860.15.743e-1939.00| DNA/RNA polymerases superfamily protein | ChrM:2... [more]
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InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR041577Reverse transcriptase/retrotransposon-derived protein, RNase H-like domainPFAMPF17919RT_RNaseH_2coord: 77..125
e-value: 1.8E-10
score: 40.8
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 21..115
e-value: 3.1E-25
score: 90.0
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 1..119
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 6..125

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vfaba.Hedin2.R1.3g085560.1_vfh_v1 ID=Vfaba.Hedin2.R1.3g085560.1_vfh_v1; Name=Vfaba.Hedin2.R1.3g085560.1; organism=Vicia faba; type=mRNA; length=414bp
ATGGTAACTAAGGGCATAGTCCTTGGACATAAGATTTCAGCCAAAGAGAT
TGATGTTGACCAAGCTAAGGTTGACGTCATCAAAAAGCTACCACCACCAA
TCAATGTCAAAGGCATCCGAGAATTCCTTGGTCATGCCGGTTTTTATCGA
CGTTTCATCAAAGATTTCTCAAAGATCGTCAATCCTTTAAGTAATCTCCT
CAACAAAGATAGGTCATTTAATTTTGATAAATATTGTTTAACTACTTTTG
AAAATATAAAAGAAAAATTAAGCACTGCACCTGTAATCACTGCACCCGAT
TGGAAAATCAATTTTGAACTCATGTGCGATGCAAGTGACTACGCGGTCGG
GGTTATTTTGGGATATAGAAAAACCAAAACTTTCATGCTATACACTATGC
GATCAAAGTCTTAA
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protein sequence of Vfaba.Hedin2.R1.3g085560.1_vfh_v1

>Vfaba.Hedin2.R1.3g085560.1_vfh_v1 ID=Vfaba.Hedin2.R1.3g085560.1_vfh_v1; Name=Vfaba.Hedin2.R1.3g085560.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=137bp
MVTKGIVLGHKISAKEIDVDQAKVDVIKKLPPPINVKGIREFLGHAGFYR
RFIKDFSKIVNPLSNLLNKDRSFNFDKYCLTTFENIKEKLSTAPVITAPD
WKINFELMCDASDYAVGVILGYRKTKTFMLYTMRSKS
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mRNA from alignment at chr3:525423237..525423650+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vfaba.Hedin2.R1.3g085560.1_vfh_v1 ID=Vfaba.Hedin2.R1.3g085560.1_vfh_v1; Name=Vfaba.Hedin2.R1.3g085560.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr3:525423237..525423650+ (Vicia faba
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR041577RT_RNaseH_2
IPR043128Rev_trsase/Diguanyl_cyclase
IPR043502DNA/RNA_pol_sf