Vfaba.Hedin2.R1.3g088960.1

Transcript Overview
NameVfaba.Hedin2.R1.3g088960.1
Unique NameVfaba.Hedin2.R1.3g088960.1_vfh_v1
TypemRNA
OrganismVicia faba (Faba bean)
Sequence length762
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr3chromosomechr3:542270885..542272067 +Vicia faba inbred line Hedin/2 genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vfhzwsR275Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vfhzwsR302Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
asvfhL408Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cavfhL046Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavfhL207Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavfhL286Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvfhL0639Cajanus cajan Asha genome v1.0Cajanus cajan
crvfhL258Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crvfhL340Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvfhL602Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvfhL845Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
psvfhL209Pisum sativum Cameor genome v1aPisum sativum
psvfhL555Pisum sativum Cameor genome v1aPisum sativum
vfhvfhR181Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vfhvfhR183Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvfhL220Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuR390Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
tifvfhL347Vicia faba cv. Tiffany genome v1.0Vicia faba
caivfhL249Cicer arietinum ICC 4958 genome v2Cicer arietinum
caivfhL377Cicer arietinum ICC 4958 genome v2Cicer arietinum
anvfhL0431Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL0622Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL0678Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL0821Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL0826Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL0838Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL1138Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
vfhvrvR353Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvrvR425Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvuaR293Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vfhvuaR327Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vfhvssR370Vicia sativa cv. Studenica genome v1.0Vicia sativa
vfhvssR400Vicia sativa cv. Studenica genome v1.0Vicia sativa
vfhvuaR394Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vfhvssR402Vicia sativa cv. Studenica genome v1.0Vicia sativa
canvfhL176Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvfhL239Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvfhL386Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvfhL505Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvfhL623Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvfhL174Cicer arietinum
carvfhL242Cicer arietinum
ccavfhL235Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavfhL340Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavfhL350Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vfhvumR392Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvumR468Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvumR503Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvvaR365Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vfhvvaR462Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vfhvvaR469Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vasvfhL274Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvfhL438Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvfhL697Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vfhvstR387Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vfhvstR403Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vfhvstR436Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vfhvstR462Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvfvfhL035Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvfhL575Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvfhL827Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vfhvunR361Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
rna-KK1_007060Cajanus cajan Asha genome v1.0Cajanus cajan
Cr_09202.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Ca_09692.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Va02G051830.3Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vigun07g142900.2Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Psat06G0410000-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Ca_03651Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
PvulFLAVERTChr07.1273Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
evm.model.Chr07.1381Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vum_08G01401.1Vigna umbellata FF25 genome v1.0Vigna umbellata
rna-XM_014655414.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
rna-XM_004495630.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vigun07g142900.2Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vigst.08G136300.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
jg3292.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
XM_058914455.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Phvul.007G198500.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-TanjilR_17598Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
LR48_mrnaVigan02g164500Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vigan.08G175300.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vfaba.Tiffany.R1.3g073080.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.3g088960Vfaba.Hedin2.R1.3g088960_vfh_v1Vicia fabagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.3g088960.1_vfh_v1-exonVfaba.Hedin2.R1.3g088960.1_vfh_v1-exon-chr3_vfh_v1:542270885..542271124Vicia fabaexon
Vfaba.Hedin2.R1.3g088960.1_vfh_v1-exonVfaba.Hedin2.R1.3g088960.1_vfh_v1-exon-chr3_vfh_v1:542271195..542271261Vicia fabaexon
Vfaba.Hedin2.R1.3g088960.1_vfh_v1-exonVfaba.Hedin2.R1.3g088960.1_vfh_v1-exon-chr3_vfh_v1:542271358..542271602Vicia fabaexon
Vfaba.Hedin2.R1.3g088960.1_vfh_v1-exonVfaba.Hedin2.R1.3g088960.1_vfh_v1-exon-chr3_vfh_v1:542271697..542271777Vicia fabaexon
Vfaba.Hedin2.R1.3g088960.1_vfh_v1-exonVfaba.Hedin2.R1.3g088960.1_vfh_v1-exon-chr3_vfh_v1:542271851..542271912Vicia fabaexon
Vfaba.Hedin2.R1.3g088960.1_vfh_v1-exonVfaba.Hedin2.R1.3g088960.1_vfh_v1-exon-chr3_vfh_v1:542272001..542272067Vicia fabaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.3g088960.1_vfh_v1-cdsVfaba.Hedin2.R1.3g088960.1_vfh_v1-cds-chr3_vfh_v1:542270885..542271124Vicia fabaCDS
Vfaba.Hedin2.R1.3g088960.1_vfh_v1-cdsVfaba.Hedin2.R1.3g088960.1_vfh_v1-cds-chr3_vfh_v1:542271195..542271261Vicia fabaCDS
Vfaba.Hedin2.R1.3g088960.1_vfh_v1-cdsVfaba.Hedin2.R1.3g088960.1_vfh_v1-cds-chr3_vfh_v1:542271358..542271602Vicia fabaCDS
Vfaba.Hedin2.R1.3g088960.1_vfh_v1-cdsVfaba.Hedin2.R1.3g088960.1_vfh_v1-cds-chr3_vfh_v1:542271697..542271777Vicia fabaCDS
Vfaba.Hedin2.R1.3g088960.1_vfh_v1-cdsVfaba.Hedin2.R1.3g088960.1_vfh_v1-cds-chr3_vfh_v1:542271851..542271912Vicia fabaCDS
Vfaba.Hedin2.R1.3g088960.1_vfh_v1-cdsVfaba.Hedin2.R1.3g088960.1_vfh_v1-cds-chr3_vfh_v1:542272001..542272067Vicia fabaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.3g088960.1_vfh_v1Vfaba.Hedin2.R1.3g088960.1_vfh_v1Vicia fabapolypeptide
Vfaba.Hedin2.R1.3g088960.1_vfh_v1Vfaba.Hedin2.R1.3g088960.1_vfh_v1-proteinVicia fabapolypeptide


Homology
BLAST of Vfaba.Hedin2.R1.3g088960.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2XWP0|A0A1S2XWP0_CICAR (uncharacterized protein LOC101491022 OS=Cicer arietinum OX=3827 GN=LOC101491022 PE=4 SV=1)

HSP 1 Score: 429.483 bits (1103), Expect = 1.697e-150
Identity = 215/258 (83.33%), Postives = 232/258 (89.92%), Query Frame = 0
Query:    1 MSIIHTLKPAT-LLSPSLSSPHTSSSFPLQSSFKPP-FCS--SLLSRRLFLPSVSGIWDAFTGG-NNNINEAVLAIRRGMSLFRQGDVLGSLVEFDRAIQLDPRQKAYLWQRGLSLYYLDRFEQGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGLDEAKKRYLEVGIDSRPVMRETYNMFKEGGDPEKLVAAFSNTRETDYFYASLYAGLFYESKNESDAAKVHIVAACKSSYGQRSNDYMASLSKVHCLCRNWTFN 253
            MSIIH LK AT + S S SS   +S+FP Q SFK P FCS  S LSRR+FLPSVSGIWDA TGG NNN + AVLAIRRGMSLFRQGDVLGS+ EFDRAI+LDPRQKAYLWQRGLSLYYLDRFE+GAEQFRLDVAQNPNDTEESIWCFLCEAQLYG+DEA+KRYLEVGID RPVMRE YNMFK GGDPEKLVAAFSN+R+ +YFYASLYAGLFYES+NESDAAKVHIVAAC+SSYGQRS+DYMASLSKVHCLCRNW F+
Sbjct:    6 MSIIHNLKSATYVFSSSSSSLRNASTFPTQLSFKVPIFCSNSSPLSRRIFLPSVSGIWDALTGGGNNNTHVAVLAIRRGMSLFRQGDVLGSVAEFDRAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARKRYLEVGIDPRPVMREAYNMFKHGGDPEKLVAAFSNSRDGEYFYASLYAGLFYESQNESDAAKVHIVAACQSSYGQRSDDYMASLSKVHCLCRNWIFS 263          
BLAST of Vfaba.Hedin2.R1.3g088960.1 vs. UniProtKB/TrEMBL
Match: tr|V7BIX8|V7BIX8_PHAVU (TPR_REGION domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_007G198500g PE=4 SV=1)

HSP 1 Score: 428.713 bits (1101), Expect = 3.288e-150
Identity = 204/256 (79.69%), Postives = 227/256 (88.67%), Query Frame = 0
Query:    1 MSIIHTLKPATLLSPSLSSPHTSSSFPLQSSFKPPFCSSL---LSRRLFLPSVSGIWDAFTGGNNNINEAVLAIRRGMSLFRQGDVLGSLVEFDRAIQLDPRQKAYLWQRGLSLYYLDRFEQGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGLDEAKKRYLEVGIDSRPVMRETYNMFKEGGDPEKLVAAFSNTRETDYFYASLYAGLFYESKNESDAAKVHIVAACKSSYGQRSNDYMASLSKVHCLCRNWTFN 253
            MSI H LKPA L+SPSL   H SSSFP+  SFK PF  +    L+RRLFLPSVSGIWDA TG NNN  EAVLAIRRGMSLFRQGDV GSLVEFD+A+QLDPRQKAYLWQRGL+LYYL+RFE+GAEQFR DVAQNPNDTEESIWCFLCEA LYG+DEA+KR+LEVGID RPVMRE YNMFK+GGDPEK VAAFS  R+++YFYASLYAGL+YES+NE+DAAKVHIVAAC+SSYGQRS+DYMA+L+KVHCLCRNW FN
Sbjct:    5 MSISHNLKPAILVSPSL---HHSSSFPVLLSFKSPFSLTHPINLTRRLFLPSVSGIWDALTGANNNAREAVLAIRRGMSLFRQGDVSGSLVEFDKAMQLDPRQKAYLWQRGLTLYYLNRFEEGAEQFRFDVAQNPNDTEESIWCFLCEAPLYGVDEARKRFLEVGIDPRPVMREAYNMFKDGGDPEKFVAAFSGGRDSEYFYASLYAGLYYESQNETDAAKVHIVAACQSSYGQRSDDYMAALAKVHCLCRNWVFN 257          
BLAST of Vfaba.Hedin2.R1.3g088960.1 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6N0J3|A0A4D6N0J3_VIGUN (Lipoprotein NlpI OS=Vigna unguiculata OX=3917 GN=DEO72_LG9g2322 PE=4 SV=1)

HSP 1 Score: 428.328 bits (1100), Expect = 4.721e-150
Identity = 205/256 (80.08%), Postives = 228/256 (89.06%), Query Frame = 0
Query:    1 MSIIHTLKPATLLSPSLSSPHTSSSFPLQSSFKPPFCSSL---LSRRLFLPSVSGIWDAFTGGNNNINEAVLAIRRGMSLFRQGDVLGSLVEFDRAIQLDPRQKAYLWQRGLSLYYLDRFEQGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGLDEAKKRYLEVGIDSRPVMRETYNMFKEGGDPEKLVAAFSNTRETDYFYASLYAGLFYESKNESDAAKVHIVAACKSSYGQRSNDYMASLSKVHCLCRNWTFN 253
            MSI H LKP+ L+SPSL   H SSSFP+  S K PF  +    L+RRLFLPSVSGIWDA TG  NN  EAVLAIRRGMSLFRQGDVLGSLVEFD+AIQLDPRQKAYLWQRGLSLYYL+RFE+GAEQFR DVAQNPNDTEESIWCFLCEAQLYG+DEA+KR+LEVGID RPVMRE Y+MFK+GGDPEKLVAAFS  R+++YFYASLYAGL+YES+NE+DAAK+HIVAAC+SSYGQRS+DYMA+LSKVHCLCRNW FN
Sbjct:    5 MSISHNLKPSILVSPSL---HHSSSFPILLSSKQPFSLTHPLNLTRRLFLPSVSGIWDALTGAGNNGREAVLAIRRGMSLFRQGDVLGSLVEFDKAIQLDPRQKAYLWQRGLSLYYLNRFEEGAEQFRFDVAQNPNDTEESIWCFLCEAQLYGVDEARKRFLEVGIDPRPVMREAYSMFKDGGDPEKLVAAFSGGRDSEYFYASLYAGLYYESQNETDAAKIHIVAACQSSYGQRSDDYMAALSKVHCLCRNWVFN 257          
BLAST of Vfaba.Hedin2.R1.3g088960.1 vs. UniProtKB/TrEMBL
Match: tr|A0A151U4Y1|A0A151U4Y1_CAJCA (TPR_REGION domain-containing protein OS=Cajanus cajan OX=3821 GN=KK1_007060 PE=4 SV=1)

HSP 1 Score: 427.943 bits (1099), Expect = 5.708e-150
Identity = 206/256 (80.47%), Postives = 227/256 (88.67%), Query Frame = 0
Query:    1 MSIIHTLKPATLLSPSLSSPHTSSSFPLQSSFKPPFCSS---LLSRRLFLPSVSGIWDAFTGGNNNINEAVLAIRRGMSLFRQGDVLGSLVEFDRAIQLDPRQKAYLWQRGLSLYYLDRFEQGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGLDEAKKRYLEVGIDSRPVMRETYNMFKEGGDPEKLVAAFSNTRETDYFYASLYAGLFYESKNESDAAKVHIVAACKSSYGQRSNDYMASLSKVHCLCRNWTFN 253
            MSI H LKP  L+SPSL   H  SSFP   SFKPPF +S   +L+RRLFLPSVSGIWDA TGGNNN  EAVLAIRRGMSLFRQGDV GS+ EFD+AIQLDPRQKAYLWQRGLSLYYL+RF++GAEQFRLDVAQNPNDTEESIWCFLCEAQLYG+DEA+KRYLE   + RPVMRE YNMFK+GGDPEKLVAAFS +RE +YFYASLYAGL+YES+N++DAAKVHIVAAC+SSYGQRS+DYMASLSKVHCLCRNW FN
Sbjct:    1 MSISHNLKPTILVSPSL---HHPSSFPFPLSFKPPFSASHSLILTRRLFLPSVSGIWDAITGGNNNAREAVLAIRRGMSLFRQGDVSGSVEEFDKAIQLDPRQKAYLWQRGLSLYYLNRFDEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARKRYLEA--NPRPVMREAYNMFKDGGDPEKLVAAFSGSREGEYFYASLYAGLYYESQNQADAAKVHIVAACQSSYGQRSDDYMASLSKVHCLCRNWVFN 251          
BLAST of Vfaba.Hedin2.R1.3g088960.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3SQI8|A0A0S3SQI8_PHAAN (TPR_REGION domain-containing protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.08G175300 PE=4 SV=1)

HSP 1 Score: 425.631 bits (1093), Expect = 6.072e-149
Identity = 205/256 (80.08%), Postives = 226/256 (88.28%), Query Frame = 0
Query:    1 MSIIHTLKPATLLSPSLSSPHTSSSFPLQSSFKPPFCSSL---LSRRLFLPSVSGIWDAFTGGNNNINEAVLAIRRGMSLFRQGDVLGSLVEFDRAIQLDPRQKAYLWQRGLSLYYLDRFEQGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGLDEAKKRYLEVGIDSRPVMRETYNMFKEGGDPEKLVAAFSNTRETDYFYASLYAGLFYESKNESDAAKVHIVAACKSSYGQRSNDYMASLSKVHCLCRNWTFN 253
            MSI H LKP+ L+SPSL   H SSSFP+  S K PF  +    L+RRLFLPSVSGIWDA TG +NN  EAVLAIRRGMSLFRQGDV GSLVEFD+AIQLDPRQKAYLWQRGLSLYYL+RFE+GAEQFR DVAQNPNDTEESIWCFLCEAQLYG+DEA+KR+LEVGID RPVMRE YNMFK+GGDPEKLVAAFS  R+++YFYASLYAGL+YES+NE DAAKVHIVAAC+SSYGQRS+DYMA+LSKVHC CRNW FN
Sbjct:    5 MSISHNLKPSILVSPSL---HHSSSFPILLSSKQPFSLTHPLNLTRRLFLPSVSGIWDALTGASNNAREAVLAIRRGMSLFRQGDVSGSLVEFDKAIQLDPRQKAYLWQRGLSLYYLNRFEEGAEQFRFDVAQNPNDTEESIWCFLCEAQLYGVDEARKRFLEVGIDPRPVMREAYNMFKDGGDPEKLVAAFSGGRDSEYFYASLYAGLYYESQNEIDAAKVHIVAACQSSYGQRSDDYMAALSKVHCQCRNWVFN 257          
BLAST of Vfaba.Hedin2.R1.3g088960.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3UXX6|A0A1S3UXX6_VIGRR (uncharacterized protein LOC106769691 OS=Vigna radiata var. radiata OX=3916 GN=LOC106769691 PE=4 SV=1)

HSP 1 Score: 424.476 bits (1090), Expect = 1.459e-148
Identity = 203/256 (79.30%), Postives = 226/256 (88.28%), Query Frame = 0
Query:    1 MSIIHTLKPATLLSPSLSSPHTSSSFPLQSSFKPPFCSSL---LSRRLFLPSVSGIWDAFTGGNNNINEAVLAIRRGMSLFRQGDVLGSLVEFDRAIQLDPRQKAYLWQRGLSLYYLDRFEQGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGLDEAKKRYLEVGIDSRPVMRETYNMFKEGGDPEKLVAAFSNTRETDYFYASLYAGLFYESKNESDAAKVHIVAACKSSYGQRSNDYMASLSKVHCLCRNWTFN 253
            MSI H LKP+ L+SPSL   H SSSFP+  S K PF  +    L+RR+FLPSVSGIWDA TG NNN  EAVLAIRRGMSLFRQGDV GSLVEFD+AIQLDPRQKAYLWQRGLSLYYL+RFE+GAEQFR DVAQNPNDTEESIWCFLCEAQLYG+DEA+KR+LEVGID RPVMRE YN+FK+GGDPEKLVAAFS  R+++YFYASLYAGL+YES+N+ DAAKVHIVAAC+SSYGQRS+DYMA+LSKVHC CRNW FN
Sbjct:    5 MSISHNLKPSVLVSPSL---HHSSSFPILLSSKQPFSLTHPLNLTRRIFLPSVSGIWDALTGANNNAREAVLAIRRGMSLFRQGDVSGSLVEFDKAIQLDPRQKAYLWQRGLSLYYLNRFEEGAEQFRFDVAQNPNDTEESIWCFLCEAQLYGVDEARKRFLEVGIDPRPVMREAYNLFKDGGDPEKLVAAFSGGRDSEYFYASLYAGLYYESQNDIDAAKVHIVAACQSSYGQRSDDYMAALSKVHCQCRNWVFN 257          
BLAST of Vfaba.Hedin2.R1.3g088960.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445IMP5|A0A445IMP5_GLYSO (TPR_REGION domain-containing protein OS=Glycine soja OX=3848 GN=D0Y65_027127 PE=4 SV=1)

HSP 1 Score: 413.305 bits (1061), Expect = 3.383e-144
Identity = 202/256 (78.91%), Postives = 222/256 (86.72%), Query Frame = 0
Query:    3 IIHTLKPA-TLLSPSLSSPHTSSSFPLQSSFKPPFCSS---LLSRRLFLPSVSGIWDAFTGGNNN-INEAVLAIRRGMSLFRQGDVLGSLVEFDRAIQLDPRQKAYLWQRGLSLYYLDRFEQGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGLDEAKKRYLEVGIDSRPVMRETYNMFKEGGDPEKLVAAFSNTRETDYFYASLYAGLFYESKNESDAAKVHIVAACKSSYGQRSNDYMASLSKVHCLCRNWTFN 253
            I H LKP   ++SPSL   H  SSFPLQ S K PF +S   +L+RRLFLPSVSGIWDA TGGNNN   EAVLAIRRGM LFRQGDV GSL EFD+AIQLDPRQKAYLWQRGLSLYYL+RFE+ AEQFRLDVAQNPNDTEESIWCFLCEAQL+G+DEA+KRYLEVG D RPVMRE YNMFK+GGDPEKLVAAFS +RE +YFYASLYAGL+YES+N +DAAKVHIVAAC+S YGQRS+DYMASL+KVHC CRNW FN
Sbjct:    5 ISHNLKPGGIMVSPSL---HHRSSFPLQLSLKAPFSASHPLVLTRRLFLPSVSGIWDALTGGNNNNAREAVLAIRRGMLLFRQGDVSGSLAEFDKAIQLDPRQKAYLWQRGLSLYYLNRFEEAAEQFRLDVAQNPNDTEESIWCFLCEAQLFGVDEARKRYLEVGRDPRPVMREAYNMFKDGGDPEKLVAAFSGSREGEYFYASLYAGLYYESQNGTDAAKVHIVAACQSPYGQRSDDYMASLAKVHCRCRNWVFN 257          
BLAST of Vfaba.Hedin2.R1.3g088960.1 vs. UniProtKB/TrEMBL
Match: tr|G7I8S7|G7I8S7_MEDTR (Putative 43kDa postsynaptic protein OS=Medicago truncatula OX=3880 GN=11426423 PE=2 SV=1)

HSP 1 Score: 409.838 bits (1052), Expect = 1.346e-142
Identity = 196/221 (88.69%), Postives = 209/221 (94.57%), Query Frame = 0
Query:   36 FCS--SLLSRRLFLPSVSGIWDAFTGG--NNNINEAVLAIRRGMSLFRQGDVLGSLVEFDRAIQLDPRQKAYLWQRGLSLYYLDRFEQGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGLDEAKKRYLEVGIDSRPVMRETYNMFKEGGDPEKLVAAFSNTRETDYFYASLYAGLFYESKNESDAAKVHIVAACKSSYGQRSNDYMASLSKVHCLCRNWTF 252
            FCS  S LSRRLFLPSVSGIWDA TGG  NNN NEA+LAIRRGMSLFRQG+VLGS+VEFD+AIQLDPRQKAYLWQRGLSLYYLDRFE+GAEQFRLDVAQNPNDTEESIWCFLCEAQLYG+DEA+KRYLEVG D RPVMRETYNMFK+GGDPEKLV AFSN+RE+DYFYASLYAGL+YES+NESDAAKVHIVAACKS YGQRS+DYMASLSKVHCLCRNW F
Sbjct:   44 FCSNPSNLSRRLFLPSVSGIWDAITGGSGNNNTNEALLAIRRGMSLFRQGEVLGSVVEFDKAIQLDPRQKAYLWQRGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARKRYLEVGRDPRPVMRETYNMFKDGGDPEKLVGAFSNSRESDYFYASLYAGLYYESQNESDAAKVHIVAACKSLYGQRSDDYMASLSKVHCLCRNWNF 264          
BLAST of Vfaba.Hedin2.R1.3g088960.1 vs. UniProtKB/TrEMBL
Match: tr|I3SUQ3|I3SUQ3_LOTJA (TPR_REGION domain-containing protein OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 406.757 bits (1044), Expect = 1.601e-141
Identity = 207/258 (80.23%), Postives = 227/258 (87.98%), Query Frame = 0
Query:    1 MSIIHTLKPATLLSPSLSSPHTSSSFPLQSSFKPP-FCS--SLLSRRLFLPSVSGIWDAFTGGNNNI--NEAVLAIRRGMSLFRQGDVLGSLVEFDRAIQLDPRQKAYLWQRGLSLYYLDRFEQGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGLDEAKKRYLEVGIDSRPVMRETYNMFKEGGDPEKLVAAFSNTRETDYFYASLYAGLFYESKNESDAAKVHIVAACKSSYGQRSNDYMASLSKVHCLCRNWTFN 253
            M  IH LKP  L+SPS    H  SSFPLQ   K P FCS  S+L+RRLFLPSVS IWDA TGGNNN    EA+LAIRRGMSLFRQGDV GS+VEFD+AIQLDPRQKAYLWQRGLSLYYL+RFE+GAEQFRLDVAQNPNDTEESIWCFLCEAQLYG+DEA+KRYLEVG DSRPVMRE YNMF++GGDPEKLVAAFSN RE +YFYASLYAGL+YES+NE+DAAKVH+VAAC+SSYGQRS+DY ASLSKVHCLCRNWT +
Sbjct:    1 MFTIHNLKPPILVSPS-PCLHHPSSFPLQLPSKAPIFCSNPSILTRRLFLPSVSAIWDAVTGGNNNNNGREALLAIRRGMSLFRQGDVSGSVVEFDKAIQLDPRQKAYLWQRGLSLYYLNRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARKRYLEVGRDSRPVMREAYNMFRDGGDPEKLVAAFSNGREGEYFYASLYAGLYYESQNETDAAKVHMVAACQSSYGQRSDDYTASLSKVHCLCRNWTIS 257          
BLAST of Vfaba.Hedin2.R1.3g088960.1 vs. UniProtKB/TrEMBL
Match: tr|B7FKP3|B7FKP3_MEDTR (TPR_REGION domain-containing protein OS=Medicago truncatula OX=3880 PE=2 SV=1)

HSP 1 Score: 405.601 bits (1041), Expect = 5.404e-141
Identity = 194/221 (87.78%), Postives = 207/221 (93.67%), Query Frame = 0
Query:   36 FCS--SLLSRRLFLPSVSGIWDAFTGG--NNNINEAVLAIRRGMSLFRQGDVLGSLVEFDRAIQLDPRQKAYLWQRGLSLYYLDRFEQGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGLDEAKKRYLEVGIDSRPVMRETYNMFKEGGDPEKLVAAFSNTRETDYFYASLYAGLFYESKNESDAAKVHIVAACKSSYGQRSNDYMASLSKVHCLCRNWTF 252
            FCS  S LSRRLFLPSVSGIWDA TGG  NNN NEA+LA RRGMSLFRQG+VLGS+VEFD+AIQLDPRQKAYLWQRGLSLYYLDRFE+GAEQFRLDVAQNPNDTEESIWCFLCEAQLYG+D A+KRYLEVG D RPVMRETYNMFK+GGDPEKLV AFSN+RE+DYFYASLYAGL+YES+NESDAAKVHIVAACKS YGQRS+DYMASLSKVHCLCRNW F
Sbjct:   44 FCSNPSNLSRRLFLPSVSGIWDAITGGSGNNNTNEALLATRRGMSLFRQGEVLGSVVEFDKAIQLDPRQKAYLWQRGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDGARKRYLEVGRDPRPVMRETYNMFKDGGDPEKLVGAFSNSRESDYFYASLYAGLYYESQNESDAAKVHIVAACKSLYGQRSDDYMASLSKVHCLCRNWNF 264          
BLAST of Vfaba.Hedin2.R1.3g088960.1 vs. Araport11
Match: AT3G05625.1 (| Tetratricopeptide repeat (TPR)-like superfamily protein | Chr3:1632408-1633912 FORWARD LENGTH=257 | 201606)

HSP 1 Score: 348.206 bits (892), Expect = 4.789e-122
Identity = 166/255 (65.10%), Postives = 203/255 (79.61%), Query Frame = 0
Query:    1 MSIIHTLKPATLLSPSLSSPHTSSSFPLQSSFKPPFC---SSLLSRRLFLPSVSGIWDAFTGG-NNNINEAVLAIRRGMSLFRQGDVLGSLVEFDRAIQLDPRQKAYLWQRGLSLYYLDRFEQGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGLDEAKKRYLEVGIDSRPVMRETYNMFKEGGDPEKLVAAFSNTRETDYFYASLYAGLFYESKNESDAAKVHIVAACKSSYGQRSNDYMASLSKVHCLCRNWT 251
            MS+   + P  ++ PS + P   ++     +  P F       LSRRLFLPSVS IWDA TGG ++N  EA+ A+RRGM LFRQGDV GS+ EFDRAI LDPRQKAYLWQRGLSLYY+DRFE+GAEQFR+DVAQNPNDTEESIWCF+CEA+L+G+D A+ ++LEVG DSRPVMRE YN+FK GGDPEKLV  FS+ + ++YFYASLYAGL+YE++ +S+ AK H+ AAC S YGQRS+DYMASL+KVHCLCRNW+
Sbjct:    1 MSLTQIVNP--IIYPSRTIPRRFTAISPFKTLSPQFSRHPPHALSRRLFLPSVSSIWDAITGGGDSNPREAIAAVRRGMQLFRQGDVAGSVAEFDRAIILDPRQKAYLWQRGLSLYYVDRFEEGAEQFRIDVAQNPNDTEESIWCFICEARLHGVDVARTQFLEVGRDSRPVMREAYNLFKNGGDPEKLVNDFSSGQASEYFYASLYAGLYYEAEGKSENAKFHLTAACGSPYGQRSDDYMASLAKVHCLCRNWS 253          
BLAST of Vfaba.Hedin2.R1.3g088960.1 vs. Araport11
Match: AT3G05625.2 (| Tetratricopeptide repeat (TPR)-like superfamily protein | Chr3:1632408-1633422 FORWARD LENGTH=192 | 201606)

HSP 1 Score: 253.447 bits (646), Expect = 1.764e-85
Identity = 123/194 (63.40%), Postives = 149/194 (76.80%), Query Frame = 0
Query:    1 MSIIHTLKPATLLSPSLSSPHTSSSFPLQSSFKPPFC---SSLLSRRLFLPSVSGIWDAFTGG-NNNINEAVLAIRRGMSLFRQGDVLGSLVEFDRAIQLDPRQKAYLWQRGLSLYYLDRFEQGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGLDEAKKRYLEVGIDSRPVMRETYNMFKEGGDPEKLVAAFS 190
            MS+   + P  ++ PS + P   ++     +  P F       LSRRLFLPSVS IWDA TGG ++N  EA+ A+RRGM LFRQGDV GS+ EFDRAI LDPRQKAYLWQRGLSLYY+DRFE+GAEQFR+DVAQNPNDTEESIWCF+CEA+L+G+D A+ ++LEVG DSRPVMRE YN+FK GGDPEK++   S
Sbjct:    1 MSLTQIVNP--IIYPSRTIPRRFTAISPFKTLSPQFSRHPPHALSRRLFLPSVSSIWDAITGGGDSNPREAIAAVRRGMQLFRQGDVAGSVAEFDRAIILDPRQKAYLWQRGLSLYYVDRFEEGAEQFRIDVAQNPNDTEESIWCFICEARLHGVDVARTQFLEVGRDSRPVMREAYNLFKNGGDPEKVLRHVS 192          
The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.3g088960.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A1S2XWP0|A0A1S2XWP0_CICAR1.697e-15083.33uncharacterized protein LOC101491022 OS=Cicer arie... [more]
tr|V7BIX8|V7BIX8_PHAVU3.288e-15079.69TPR_REGION domain-containing protein OS=Phaseolus ... [more]
tr|A0A4D6N0J3|A0A4D6N0J3_VIGUN4.721e-15080.08Lipoprotein NlpI OS=Vigna unguiculata OX=3917 GN=D... [more]
tr|A0A151U4Y1|A0A151U4Y1_CAJCA5.708e-15080.47TPR_REGION domain-containing protein OS=Cajanus ca... [more]
tr|A0A0S3SQI8|A0A0S3SQI8_PHAAN6.072e-14980.08TPR_REGION domain-containing protein OS=Vigna angu... [more]
tr|A0A1S3UXX6|A0A1S3UXX6_VIGRR1.459e-14879.30uncharacterized protein LOC106769691 OS=Vigna radi... [more]
tr|A0A445IMP5|A0A445IMP5_GLYSO3.383e-14478.91TPR_REGION domain-containing protein OS=Glycine so... [more]
tr|G7I8S7|G7I8S7_MEDTR1.346e-14288.69Putative 43kDa postsynaptic protein OS=Medicago tr... [more]
tr|I3SUQ3|I3SUQ3_LOTJA1.601e-14180.23TPR_REGION domain-containing protein OS=Lotus japo... [more]
tr|B7FKP3|B7FKP3_MEDTR5.404e-14187.78TPR_REGION domain-containing protein OS=Medicago t... [more]
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BLAST of Vfaba.Hedin2.R1.3g088960.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Vfaba.Hedin2.R1.3g088960.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11)
Total hits: 2
Match NameE-valueIdentityDescription
AT3G05625.14.789e-12265.10| Tetratricopeptide repeat (TPR)-like superfamily ... [more]
AT3G05625.21.764e-8563.40| Tetratricopeptide repeat (TPR)-like superfamily ... [more]
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InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 65..242
e-value: 1.1E-20
score: 76.4
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 71..218
NoneNo IPR availablePANTHERPTHR47908coord: 24..252
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 67..100
score: 8.2899

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vfaba.Hedin2.R1.3g088960.1_vfh_v1 ID=Vfaba.Hedin2.R1.3g088960.1_vfh_v1; Name=Vfaba.Hedin2.R1.3g088960.1; organism=Vicia faba; type=mRNA; length=762bp
ATGTCCATTATCCACACCCTTAAACCCGCTACCTTACTCTCCCCTTCCCT
TTCTTCACCCCACACTTCCTCATCATTCCCGTTACAATCATCTTTCAAAC
CACCCTTCTGTTCCTCACTCCTTTCCCGAAGACTCTTCCTTCCATCCGTT
TCCGGCATCTGGGACGCCTTCACTGGCGGCAATAACAACATCAATGAAGC
CGTTCTCGCAATTCGACGCGGAATGTCTCTCTTCAGACAGGGTGATGTTT
TAGGATCTCTTGTGGAATTCGACAGAGCAATTCAGTTGGACCCTCGTCAA
AAAGCCTATCTTTGGCAAAGAGGCCTTTCACTTTACTACCTTGATAGGTT
TGAACAAGGGGCTGAGCAGTTTCGGTTAGACGTTGCACAAAATCCCAATG
ATACAGAAGAGTCCATATGGTGCTTTCTCTGTGAAGCTCAACTATATGGA
CTCGATGAAGCAAAGAAGCGGTATCTTGAGGTTGGCATAGACTCAAGGCC
TGTCATGAGGGAAACATACAACATGTTTAAAGAGGGTGGAGATCCTGAAA
AGCTTGTAGCTGCATTCTCTAATACCAGAGAAACTGATTATTTTTATGCT
TCACTCTATGCCGGGCTGTTTTACGAATCTAAGAATGAAAGTGATGCTGC
AAAAGTTCATATAGTAGCTGCTTGCAAGTCTTCTTATGGCCAAAGGTCTA
ATGATTATATGGCTTCTCTTTCCAAGGTTCACTGTCTTTGTCGAAATTGG
ACTTTCAACTGA
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protein sequence of Vfaba.Hedin2.R1.3g088960.1_vfh_v1

>Vfaba.Hedin2.R1.3g088960.1_vfh_v1 ID=Vfaba.Hedin2.R1.3g088960.1_vfh_v1; Name=Vfaba.Hedin2.R1.3g088960.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=253bp
MSIIHTLKPATLLSPSLSSPHTSSSFPLQSSFKPPFCSSLLSRRLFLPSV
SGIWDAFTGGNNNINEAVLAIRRGMSLFRQGDVLGSLVEFDRAIQLDPRQ
KAYLWQRGLSLYYLDRFEQGAEQFRLDVAQNPNDTEESIWCFLCEAQLYG
LDEAKKRYLEVGIDSRPVMRETYNMFKEGGDPEKLVAAFSNTRETDYFYA
SLYAGLFYESKNESDAAKVHIVAACKSSYGQRSNDYMASLSKVHCLCRNW
TFN
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mRNA from alignment at chr3:542270885..542272067+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vfaba.Hedin2.R1.3g088960.1_vfh_v1 ID=Vfaba.Hedin2.R1.3g088960.1_vfh_v1; Name=Vfaba.Hedin2.R1.3g088960.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr3:542270885..542272067+ (Vicia faba
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR019734TPR_repeat
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding