Vfaba.Hedin2.R1.3g127720.1

Transcript Overview
NameVfaba.Hedin2.R1.3g127720.1
Unique NameVfaba.Hedin2.R1.3g127720.1_vfh_v1
TypemRNA
OrganismVicia faba (Faba bean)
Sequence length366
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr3chromosomechr3:887865900..887866265 +Vicia faba inbred line Hedin/2 genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vfhzwsR271Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vfhzwsR301Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
asvfhL299Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvfhL307Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvfhL381Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cavfhL287Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvfhL0342Cajanus cajan Asha genome v1.0Cajanus cajan
crvfhL197Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crvfhL384Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvfhL458Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvfhL633Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
psvfhL556Pisum sativum Cameor genome v1aPisum sativum
vfhvfhL076Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvfhL089Vicia faba cv. Tiffany genome v1.0Vicia faba
tifvfhL220Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuR355Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vfhvuR367Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caivfhL364Cicer arietinum ICC 4958 genome v2Cicer arietinum
anvfhL0680Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL0820Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL1059Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL1139Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
vfhvrvR335Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvrvR398Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvuaR318Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vfhvssR333Vicia sativa cv. Studenica genome v1.0Vicia sativa
vfhvssR339Vicia sativa cv. Studenica genome v1.0Vicia sativa
vfhvuaR351Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvfhL240Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvfhL031Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvfhL360Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvfhL126Cicer arietinum
carvfhL243Cicer arietinum
carvfhL636Cicer arietinum
ccavfhL210Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavfhL687Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vfhvumR423Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvumR459Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvumR462Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvvaR361Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vfhvvaR396Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vasvfhL197Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvfhL198Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvfhL728Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vfhvstR396Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vfhvstR489Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvfvfhL427Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvfhL608Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vfhvunR326Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vfhvunR340Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
jg41362.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Ca_10209.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Cr_08074.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Psat06G0516500-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Ca_04371Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
rna-XM_004496393.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vfaba.Tiffany.R1.3g102920.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.3g127720Vfaba.Hedin2.R1.3g127720_vfh_v1Vicia fabagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.3g127720.1_vfh_v1-exonVfaba.Hedin2.R1.3g127720.1_vfh_v1-exon-chr3_vfh_v1:887865900..887866265Vicia fabaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.3g127720.1_vfh_v1-cdsVfaba.Hedin2.R1.3g127720.1_vfh_v1-cds-chr3_vfh_v1:887865900..887866265Vicia fabaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.3g127720.1_vfh_v1Vfaba.Hedin2.R1.3g127720.1_vfh_v1Vicia fabapolypeptide
Vfaba.Hedin2.R1.3g127720.1_vfh_v1Vfaba.Hedin2.R1.3g127720.1_vfh_v1-proteinVicia fabapolypeptide


Homology
BLAST of Vfaba.Hedin2.R1.3g127720.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3L5X2|A0A2K3L5X2_TRIPR (Uncharacterized protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g029820 PE=4 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 7.994e-65
Identity = 99/121 (81.82%), Postives = 106/121 (87.60%), Query Frame = 0
Query:    1 MANQPNNENQQALSSAALIQKTDEDQVAGGPSAVGFIDSLEQRYQKIKEHAEAYPYVWASYIVVYGGFGLWTAYRWRKLRRTEDRVRKLQQRLRELVEAEQPARSAKVVEKGSTSSEKPSK 121
            MANQP NENQ+A SSA LIQ+T EDQV    SAVGFI+S+EQRYQKIKEHAE YPYVWASYIVVYGGFGLWTAYRWRKLRRTED VR LQ+RLR+LVEAE+   SAKVVEKGSTSSEK SK
Sbjct:    9 MANQPKNENQEAPSSAPLIQQTGEDQVVSSTSAVGFINSMEQRYQKIKEHAETYPYVWASYIVVYGGFGLWTAYRWRKLRRTEDSVRTLQERLRKLVEAEKSGDSAKVVEKGSTSSEKLSK 129          
BLAST of Vfaba.Hedin2.R1.3g127720.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3E5T5|A0A1S3E5T5_CICAR (uncharacterized protein LOC101509617 OS=Cicer arietinum OX=3827 GN=LOC101509617 PE=4 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 4.541e-64
Identity = 99/122 (81.15%), Postives = 107/122 (87.70%), Query Frame = 0
Query:    1 MANQPNNENQQALSSAALIQKTDEDQVAGGPSAVGFIDSLEQRYQKIKEHAEAYPYVWASYIVVYGGFGLWTAYRWRKLRRTEDRVRKLQQRLRELVEAEQPARSAKVVEKGSTSSE-KPSK 121
            MANQPN ENQQA SSA+LIQKT EDQV  GPSA GFIDSLE RYQKIKEHAE YPYVWASYIVVYGGFGLWT YRWRKLR+TE+RVR LQ++LR+L+EAE+   SAKVVEKGS SSE KPSK
Sbjct:    1 MANQPN-ENQQAPSSASLIQKTGEDQVVSGPSAAGFIDSLENRYQKIKEHAETYPYVWASYIVVYGGFGLWTTYRWRKLRKTENRVRSLQEKLRKLIEAEESGNSAKVVEKGSASSEKKPSK 121          
BLAST of Vfaba.Hedin2.R1.3g127720.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2XYA8|A0A1S2XYA8_CICAR (uncharacterized protein LOC101488621 OS=Cicer arietinum OX=3827 GN=LOC101488621 PE=4 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 1.132e-60
Identity = 98/122 (80.33%), Postives = 105/122 (86.07%), Query Frame = 0
Query:    1 MANQPNNENQQALSSAALIQKTDEDQVAGGPSAVGFIDSLEQRYQKIKEHAEAYPYVWASYIVVYGGFGLWTAYRWRKLRRTEDRVRKLQQRLRELVEAEQPARSAKVVEKGSTSSE-KPSK 121
            MANQPN ENQQA SSA+LIQKT EDQV  GPSA GFIDSLE RYQKIKEHAE Y YVWASYI+VYGGFGLWT YRWRKLR+TE+RVR LQ+ LR+LVEAE+   SAKVVEKGS SSE KPSK
Sbjct:    1 MANQPN-ENQQAPSSASLIQKTGEDQVVSGPSADGFIDSLENRYQKIKEHAENYRYVWASYILVYGGFGLWTFYRWRKLRKTENRVRSLQETLRKLVEAEKSGNSAKVVEKGSASSEKKPSK 121          
BLAST of Vfaba.Hedin2.R1.3g127720.1 vs. UniProtKB/TrEMBL
Match: tr|G7IBX7|G7IBX7_MEDTR (Transmembrane protein, putative OS=Medicago truncatula OX=3880 GN=11407014 PE=4 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 3.574e-59
Identity = 95/127 (74.80%), Postives = 103/127 (81.10%), Query Frame = 0
Query:    1 MANQPNNENQQALSSAALIQKTDEDQVAGGPSAVGFIDSLEQRYQKIKEHAEAYPYVWASYIVVYGGFGLWTAYRWRKLRRTEDRVRKLQQRLREL------VEAEQPARSAKVVEKGSTSSEKPSK 121
            MANQPNNE QQA SSAA IQ+T EDQV G P A GF+DSLE RY+KIKEHAE YPYVW SYI+VYGGFGLW AYR+RKL RTEDRVR LQ RLRE+      VEAE+ + SAKVVEKGSTSSE PSK
Sbjct:   58 MANQPNNETQQAPSSAAPIQETGEDQVVGAPPAAGFMDSLENRYKKIKEHAETYPYVWGSYILVYGGFGLWFAYRYRKLLRTEDRVRALQARLREMVEKDKIVEAEKSSNSAKVVEKGSTSSEIPSK 184          
BLAST of Vfaba.Hedin2.R1.3g127720.1 vs. UniProtKB/TrEMBL
Match: tr|A0A4P1R492|A0A4P1R492_LUPAN (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_10433 PE=4 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.004e-55
Identity = 88/122 (72.13%), Postives = 100/122 (81.97%), Query Frame = 0
Query:    1 MANQPNNENQQALSSAALIQKTDEDQVAGGPS-AVGFIDSLEQRYQKIKEHAEAYPYVWASYIVVYGGFGLWTAYRWRKLRRTEDRVRKLQQRLRELVEAEQPARSAKVVEKGSTSSEKPSK 121
            MANQP NEN QA +S+  IQKT+ED VA   + A+G  DSLE+RY KIKEHAE YPYVWASYIVVYGGF LWT YRWRKLRRTE+ VR LQ+RLR+LVEA++ A S K VEKGS+SSEKPSK
Sbjct:    1 MANQPKNENLQATNSSQPIQKTEEDHVAANAAFALGLKDSLEKRYLKIKEHAETYPYVWASYIVVYGGFALWTGYRWRKLRRTENSVRNLQERLRKLVEADESATSIKAVEKGSSSSEKPSK 122          
BLAST of Vfaba.Hedin2.R1.3g127720.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6A4R861|A0A6A4R861_LUPAL (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr01g0022321 PE=4 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.096e-54
Identity = 88/122 (72.13%), Postives = 95/122 (77.87%), Query Frame = 0
Query:    1 MANQPNNENQQALSSAALIQKTDEDQVAGGPSAVGFIDSLEQRYQKIKEHAEAYPYVWASYIVVYGGFGLWTAYRWRKLRRTEDRVRKLQQRLRELVEAEQPARSAKVVEKGST-SSEKPSK 121
            MANQP NENQQA SS   I KT+EDQV    SA+   DSL QRY KIKEHAE YPYVW SYIVVYGGF LWT YRWRKLR+TE  VR LQ+RLR+LVEA++ A S K VEKGST SSEKPSK
Sbjct:    1 MANQPKNENQQAASSTNPIHKTEEDQVTSATSALDLKDSLVQRYLKIKEHAETYPYVWGSYIVVYGGFALWTGYRWRKLRKTEASVRNLQERLRKLVEADESATSTKAVEKGSTSSSEKPSK 122          
BLAST of Vfaba.Hedin2.R1.3g127720.1 vs. UniProtKB/TrEMBL
Match: tr|A0A151R5K0|A0A151R5K0_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_040998 PE=4 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.371e-54
Identity = 87/121 (71.90%), Postives = 104/121 (85.95%), Query Frame = 0
Query:    1 MANQPNNENQQALSSAALIQKTDEDQVAGGPSAVGFIDSLEQRYQKIKEHAEAYPYVWASYIVVYGGFGLWTAYRWRKLRRTEDRVRKLQQRLRELVEAEQPARSAKVVEKGSTSSEKPSK 121
            M NQP  +NQQA SSA+ I K++EDQ A   +A+G+ DSLE++Y ++KEHAE YPYVWASYIVVYGGFGLWTAYRWRKLR+TEDRVR LQ+RLR+LVEAE+ + S KVVEKGSTSS+KPSK
Sbjct:    1 MENQPK-QNQQATSSASPILKSEEDQAAS--TAMGWKDSLEKKYLEVKEHAETYPYVWASYIVVYGGFGLWTAYRWRKLRKTEDRVRSLQERLRKLVEAEESSSSTKVVEKGSTSSDKPSK 118          
BLAST of Vfaba.Hedin2.R1.3g127720.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1J7GE06|A0A1J7GE06_LUPAN (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_12777 PE=4 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.817e-54
Identity = 86/121 (71.07%), Postives = 94/121 (77.69%), Query Frame = 0
Query:    1 MANQPNNENQQALSSAALIQKTDEDQVAGGPSAVGFIDSLEQRYQKIKEHAEAYPYVWASYIVVYGGFGLWTAYRWRKLRRTEDRVRKLQQRLRELVEAEQPARSAKVVEKGSTSSEKPSK 121
            MANQP NENQQA SS   I KT++DQV    S +   DSL Q+Y KIKEHAE YPYVWASYIVVYGGF LWT YRWRKLRRTE  VR LQ+RLR+LVEA++ A S K VEKGST SEKPSK
Sbjct:    1 MANQPKNENQQAASSTNPIHKTEDDQVTSATSVLDLKDSLVQQYLKIKEHAETYPYVWASYIVVYGGFALWTGYRWRKLRRTEASVRNLQERLRKLVEADESAISTKAVEKGSTPSEKPSK 121          
BLAST of Vfaba.Hedin2.R1.3g127720.1 vs. UniProtKB/TrEMBL
Match: tr|I1KZ96|I1KZ96_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_08G354200 PE=4 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.173e-54
Identity = 86/121 (71.07%), Postives = 101/121 (83.47%), Query Frame = 0
Query:    1 MANQPNNENQQALSSAALIQKTDEDQVAGGPSAVGFIDSLEQRYQKIKEHAEAYPYVWASYIVVYGGFGLWTAYRWRKLRRTEDRVRKLQQRLRELVEAEQPARSAKVVEKGSTSSEKPSK 121
            MANQ + ENQQA SS   IQK++EDQ A   + +GF DSLE++Y+K+KEHAE YPYVWASYIVVYGGF LWT YRWRKLR+TEDRVR  Q+RLR+L+EAE+   SAKVVEKGSTSS+KPSK
Sbjct:    1 MANQ-SKENQQATSSTPPIQKSEEDQAAS--TTMGFKDSLEKQYRKVKEHAETYPYVWASYIVVYGGFALWTTYRWRKLRKTEDRVRTHQERLRKLIEAEESTSSAKVVEKGSTSSDKPSK 118          
BLAST of Vfaba.Hedin2.R1.3g127720.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0B2PHI7|A0A0B2PHI7_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_022613 PE=4 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.173e-54
Identity = 86/121 (71.07%), Postives = 101/121 (83.47%), Query Frame = 0
Query:    1 MANQPNNENQQALSSAALIQKTDEDQVAGGPSAVGFIDSLEQRYQKIKEHAEAYPYVWASYIVVYGGFGLWTAYRWRKLRRTEDRVRKLQQRLRELVEAEQPARSAKVVEKGSTSSEKPSK 121
            MANQ + ENQQA SS   IQK++EDQ A   + +GF DSLE++Y+K+KEHAE YPYVWASYIVVYGGF LWT YRWRKLR+TEDRVR  Q+RLR+L+EAE+   SAKVVEKGSTSS+KPSK
Sbjct:    1 MANQ-SKENQQATSSTPPIQKSEEDQAAS--TTMGFKDSLEKQYRKVKEHAETYPYVWASYIVVYGGFALWTTYRWRKLRKTEDRVRTHQERLRKLIEAEESTSSAKVVEKGSTSSDKPSK 118          
BLAST of Vfaba.Hedin2.R1.3g127720.1 vs. Araport11
Match: AT5G09270.2 (| transmembrane protein | Chr5:2879680-2880015 FORWARD LENGTH=111 | 201606)

HSP 1 Score: 117.857 bits (294), Expect = 2.399e-35
Identity = 58/96 (60.42%), Postives = 75/96 (78.12%), Query Frame = 0
Query:   31 PSAV--GFIDSLEQRYQKIKEHAEAYPYVWASYIVVYGGFGLWTAYRWRKLRRTEDRVRKLQQRLRELVEAEQPA----RSAKVVEKGSTSSEKPS 120
            PS V  GF+ ++E++Y+K+++HAEAYPYVW SY VVYGG  LWTAYRWRKLRRTEDRVR LQ +LR+LVE EQ A    +SA+ V+K S+  +K +
Sbjct:   15 PSQVAPGFVGAIEEQYKKLRDHAEAYPYVWGSYTVVYGGLFLWTAYRWRKLRRTEDRVRGLQTKLRKLVENEQAAVTASKSAQSVDKSSSIPDKKT 110          
BLAST of Vfaba.Hedin2.R1.3g127720.1 vs. Araport11
Match: AT5G09270.1 (| transmembrane protein | Chr5:2879680-2880015 FORWARD LENGTH=111 | 201606)

HSP 1 Score: 117.857 bits (294), Expect = 2.399e-35
Identity = 58/96 (60.42%), Postives = 75/96 (78.12%), Query Frame = 0
Query:   31 PSAV--GFIDSLEQRYQKIKEHAEAYPYVWASYIVVYGGFGLWTAYRWRKLRRTEDRVRKLQQRLRELVEAEQPA----RSAKVVEKGSTSSEKPS 120
            PS V  GF+ ++E++Y+K+++HAEAYPYVW SY VVYGG  LWTAYRWRKLRRTEDRVR LQ +LR+LVE EQ A    +SA+ V+K S+  +K +
Sbjct:   15 PSQVAPGFVGAIEEQYKKLRDHAEAYPYVWGSYTVVYGGLFLWTAYRWRKLRRTEDRVRGLQTKLRKLVENEQAAVTASKSAQSVDKSSSIPDKKT 110          
The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.3g127720.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A2K3L5X2|A0A2K3L5X2_TRIPR7.994e-6581.82Uncharacterized protein (Fragment) OS=Trifolium pr... [more]
tr|A0A1S3E5T5|A0A1S3E5T5_CICAR4.541e-6481.15uncharacterized protein LOC101509617 OS=Cicer arie... [more]
tr|A0A1S2XYA8|A0A1S2XYA8_CICAR1.132e-6080.33uncharacterized protein LOC101488621 OS=Cicer arie... [more]
tr|G7IBX7|G7IBX7_MEDTR3.574e-5974.80Transmembrane protein, putative OS=Medicago trunca... [more]
tr|A0A4P1R492|A0A4P1R492_LUPAN1.004e-5572.13Uncharacterized protein OS=Lupinus angustifolius O... [more]
tr|A0A6A4R861|A0A6A4R861_LUPAL1.096e-5472.13Uncharacterized protein OS=Lupinus albus OX=3870 G... [more]
tr|A0A151R5K0|A0A151R5K0_CAJCA1.371e-5471.90Uncharacterized protein OS=Cajanus cajan OX=3821 G... [more]
tr|A0A1J7GE06|A0A1J7GE06_LUPAN1.817e-5471.07Uncharacterized protein OS=Lupinus angustifolius O... [more]
tr|I1KZ96|I1KZ96_SOYBN2.173e-5471.07Uncharacterized protein OS=Glycine max OX=3847 GN=... [more]
tr|A0A0B2PHI7|A0A0B2PHI7_GLYSO2.173e-5471.07Uncharacterized protein OS=Glycine soja OX=3848 GN... [more]
back to top
BLAST of Vfaba.Hedin2.R1.3g127720.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Vfaba.Hedin2.R1.3g127720.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11)
Total hits: 2
Match NameE-valueIdentityDescription
AT5G09270.22.399e-3560.42| transmembrane protein | Chr5:2879680-2880015 FOR... [more]
AT5G09270.12.399e-3560.42| transmembrane protein | Chr5:2879680-2880015 FOR... [more]
back to top
InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availablePANTHERPTHR36794TRANSMEMBRANE PROTEINcoord: 20..120

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vfaba.Hedin2.R1.3g127720.1_vfh_v1 ID=Vfaba.Hedin2.R1.3g127720.1_vfh_v1; Name=Vfaba.Hedin2.R1.3g127720.1; organism=Vicia faba; type=mRNA; length=366bp
ATGGCAAATCAACCAAATAATGAAAACCAGCAAGCGCTAAGTTCTGCAGC
ACTCATCCAGAAAACTGATGAGGATCAAGTGGCCGGTGGCCCTTCAGCTG
TGGGCTTTATAGATTCATTGGAACAACGGTATCAAAAAATCAAAGAGCAT
GCAGAAGCTTATCCTTATGTATGGGCTTCCTATATTGTTGTATACGGTGG
CTTTGGTCTCTGGACTGCCTATAGATGGAGAAAGCTTCGCAGGACAGAGG
ACAGGGTACGCAAACTTCAACAAAGACTACGTGAGCTCGTTGAAGCTGAA
CAACCTGCTAGGTCTGCCAAAGTGGTTGAAAAGGGTTCCACATCTTCTGA
GAAACCTTCTAAGTAG
back to top

protein sequence of Vfaba.Hedin2.R1.3g127720.1_vfh_v1

>Vfaba.Hedin2.R1.3g127720.1_vfh_v1 ID=Vfaba.Hedin2.R1.3g127720.1_vfh_v1; Name=Vfaba.Hedin2.R1.3g127720.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=121bp
MANQPNNENQQALSSAALIQKTDEDQVAGGPSAVGFIDSLEQRYQKIKEH
AEAYPYVWASYIVVYGGFGLWTAYRWRKLRRTEDRVRKLQQRLRELVEAE
QPARSAKVVEKGSTSSEKPSK
back to top

mRNA from alignment at chr3:887865900..887866265+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vfaba.Hedin2.R1.3g127720.1_vfh_v1 ID=Vfaba.Hedin2.R1.3g127720.1_vfh_v1; Name=Vfaba.Hedin2.R1.3g127720.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr3:887865900..887866265+ (Vicia faba
back to top