Vfaba.Hedin2.R1.4g177280.1

Transcript Overview
NameVfaba.Hedin2.R1.4g177280.1
Unique NameVfaba.Hedin2.R1.4g177280.1_vfh_v1
TypemRNA
OrganismVicia faba (Faba bean)
Sequence length648
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr4chromosomechr4:1222810110..1222811568 +Vicia faba inbred line Hedin/2 genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vfhzwsR408Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vfhzwsR425Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
asvfhL070Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvfhL615Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cavfhL434Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavfhL523Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavfhL644Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvfhL0186Cajanus cajan Asha genome v1.0Cajanus cajan
ccvfhL0463Cajanus cajan Asha genome v1.0Cajanus cajan
ccvfhL0474Cajanus cajan Asha genome v1.0Cajanus cajan
crvfhL078Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvfhL111Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvfhL375Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
crvfhL771Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvfhL516Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvfhL869Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
psvfhL333Pisum sativum Cameor genome v1aPisum sativum
psvfhL355Pisum sativum Cameor genome v1aPisum sativum
vfhvfhL141Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvfhL167Vicia faba cv. Tiffany genome v1.0Vicia faba
tifvfhL172Vicia faba cv. Tiffany genome v1.0Vicia faba
tifvfhL310Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuR451Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vfhvuR477Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vfhvuR509Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vfhvuR527Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvfhL0041Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL0042Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL0244Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL0400Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
caivfhL871Cicer arietinum ICC 4958 genome v2Cicer arietinum
anvfhL0773Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL0907Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
vfhvrvR462Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvrvR506Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvrvR519Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvssR486Vicia sativa cv. Studenica genome v1.0Vicia sativa
vfhvssR493Vicia sativa cv. Studenica genome v1.0Vicia sativa
canvfhL385Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvfhL470Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvfhL580Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvfhL211Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvfhL306Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvfhL627Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvfhL382Cicer arietinum
carvfhL457Cicer arietinum
carvfhL577Cicer arietinum
ccavfhL099Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavfhL163Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavfhL179Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavfhL355Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavfhL360Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vfhvumR525Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvumR556Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvumR590Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvvaR487Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vfhvvaR520Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vfhvvaR535Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vasvfhL074Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvfhL297Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvfhL659Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvfhL807Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vfhvstR516Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vfhvstR569Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vfhvstR618Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvfvfhL106Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvfhL359Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvfhL484Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvfhL849Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vfhvunR421Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vfhvunR444Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
PvulFLAVERTChr03.1000982Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Vigun03g357400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vigun03g357400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Cr_19512.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
LR48_mrnaVigan01g257700Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Cc_v2.0_06199.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
rna-TanjilR_26244Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Phvul.003G166300.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-TanjilR_07008Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vfaba.Tiffany.R1.4g134440.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.4g177280Vfaba.Hedin2.R1.4g177280_vfh_v1Vicia fabagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.4g177280.1_vfh_v1-exonVfaba.Hedin2.R1.4g177280.1_vfh_v1-exon-chr4_vfh_v1:1222810110..1222810431Vicia fabaexon
Vfaba.Hedin2.R1.4g177280.1_vfh_v1-exonVfaba.Hedin2.R1.4g177280.1_vfh_v1-exon-chr4_vfh_v1:1222810632..1222810774Vicia fabaexon
Vfaba.Hedin2.R1.4g177280.1_vfh_v1-exonVfaba.Hedin2.R1.4g177280.1_vfh_v1-exon-chr4_vfh_v1:1222811122..1222811194Vicia fabaexon
Vfaba.Hedin2.R1.4g177280.1_vfh_v1-exonVfaba.Hedin2.R1.4g177280.1_vfh_v1-exon-chr4_vfh_v1:1222811459..1222811568Vicia fabaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.4g177280.1_vfh_v1-cdsVfaba.Hedin2.R1.4g177280.1_vfh_v1-cds-chr4_vfh_v1:1222810110..1222810431Vicia fabaCDS
Vfaba.Hedin2.R1.4g177280.1_vfh_v1-cdsVfaba.Hedin2.R1.4g177280.1_vfh_v1-cds-chr4_vfh_v1:1222810632..1222810774Vicia fabaCDS
Vfaba.Hedin2.R1.4g177280.1_vfh_v1-cdsVfaba.Hedin2.R1.4g177280.1_vfh_v1-cds-chr4_vfh_v1:1222811122..1222811194Vicia fabaCDS
Vfaba.Hedin2.R1.4g177280.1_vfh_v1-cdsVfaba.Hedin2.R1.4g177280.1_vfh_v1-cds-chr4_vfh_v1:1222811459..1222811568Vicia fabaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.4g177280.1_vfh_v1Vfaba.Hedin2.R1.4g177280.1_vfh_v1Vicia fabapolypeptide
Vfaba.Hedin2.R1.4g177280.1_vfh_v1Vfaba.Hedin2.R1.4g177280.1_vfh_v1-proteinVicia fabapolypeptide


Homology
[Close]
BLAST of Vfaba.Hedin2.R1.4g177280.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6MYZ7|A0A2Z6MYZ7_TRISU (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_207320 PE=4 SV=1)

HSP 1 Score: 342.813 bits (878), Expect = 1.964e-117
Identity = 188/224 (83.93%), Postives = 203/224 (90.62%), Query Frame = 0 
Query:    1 MATNFLSTANPFHLATP---------TYVHKNQIIKCNVKRDSSLCKVVNPSVTKRSISISFVTSMVLSLTGKGLFDANAAILEADDDIELLEKVKKDRIKRLEKQGIISSSTKETGYLQDVVYKLSEVGKAIEKNDLTTAGSVLGSGKDTTDWVQKANIALNKLSSSPEEKTEVDTFNSSLASLVSSVAQNDVKSSKIAFVSSAAAFEKWTSLTGLVGKLNGL 215
            MATNFLSTAN FHLA+          T+V+ N I KCNVKR  +LCKVVNPSVTKR ISISFVTS+VLSLTGKGLFDANAAILEADDD+ELLEKVKKDR KRLEKQG+ISSSTKETGYLQD+VYKLSEVG+AIEKNDLT+AGSVLG GKD TDWVQKANIALNKLSSSPEE++EVDTFNSSLASLVSSV+QNDV+SSKIAFVSSAAAFEKWTSLTG+VGKL GL
Sbjct:    1 MATNFLSTANLFHLASSSQSSVSSISTHVYNNPI-KCNVKRQLTLCKVVNPSVTKRGISISFVTSLVLSLTGKGLFDANAAILEADDDVELLEKVKKDRKKRLEKQGVISSSTKETGYLQDLVYKLSEVGQAIEKNDLTSAGSVLGKGKD-TDWVQKANIALNKLSSSPEEQSEVDTFNSSLASLVSSVSQNDVESSKIAFVSSAAAFEKWTSLTGIVGKLKGL 222
[Close]
BLAST of Vfaba.Hedin2.R1.4g177280.1 vs. UniProtKB/TrEMBL
Match: tr|A0A072TFC5|A0A072TFC5_MEDTR (Thylakoid lumenal 16.5 kDa protein OS=Medicago truncatula OX=3880 GN=25480916 PE=4 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 1.583e-111
Identity = 181/226 (80.09%), Postives = 198/226 (87.61%), Query Frame = 0 
Query:    1 MATNFLSTANPFHLA--------TPTYVHKNQIIKCNVKRDSSLCKVVNP---SVTKRSISISFVTSMVLSLTGKGLFDANAAILEADDDIELLEKVKKDRIKRLEKQGIISSSTKETGYLQDVVYKLSEVGKAIEKNDLTTAGSVLGSGKDTTDWVQKANIALNKLSSSPEEKTEVDTFNSSLASLVSSVAQNDVKSSKIAFVSSAAAFEKWTSLTGLVGKLNGL 215
            MA+NFLSTANPFHLA        TPTY +    IKCN+KR  + CKVVN    SVTKR ISI F+TS+VLSL+GKGLFDANAAILEADDD+ELLEKVKKDR KRLEKQG+ISSSTKETGYLQD+VYKLSEVG+AIE+NDLT+AGSVLG GKD  DWVQKANIALNKLSSSPEEK+EVDTFNSSLASLVSSVAQNDV+SSKIAFVSSA+A EKWTSLTGLVGKL G+
Sbjct:   12 MASNFLSTANPFHLASSSQSSLVTPTYAY--NPIKCNLKRQLTPCKVVNQPSLSVTKRDISIGFMTSLVLSLSGKGLFDANAAILEADDDVELLEKVKKDRKKRLEKQGVISSSTKETGYLQDLVYKLSEVGQAIEQNDLTSAGSVLGKGKD-ADWVQKANIALNKLSSSPEEKSEVDTFNSSLASLVSSVAQNDVESSKIAFVSSASAIEKWTSLTGLVGKLKGI 234
[Close]
BLAST of Vfaba.Hedin2.R1.4g177280.1 vs. UniProtKB/TrEMBL
Match: tr|A0A396IEE9|A0A396IEE9_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr4g0063951 PE=4 SV=1)

HSP 1 Score: 327.02 bits (837), Expect = 3.160e-111
Identity = 181/226 (80.09%), Postives = 198/226 (87.61%), Query Frame = 0 
Query:    1 MATNFLSTANPFHLA--------TPTYVHKNQIIKCNVKRDSSLCKVVNP---SVTKRSISISFVTSMVLSLTGKGLFDANAAILEADDDIELLEKVKKDRIKRLEKQGIISSSTKETGYLQDVVYKLSEVGKAIEKNDLTTAGSVLGSGKDTTDWVQKANIALNKLSSSPEEKTEVDTFNSSLASLVSSVAQNDVKSSKIAFVSSAAAFEKWTSLTGLVGKLNGL 215
            MA+NFLSTANPFHLA        TPTY +    IKCN+KR  + CKVVN    SVTKR ISI F+TS+VLSL+GKGLFDANAAILEADDD+ELLEKVKKDR KRLEKQG+ISSSTKETGYLQD+VYKLSEVG+AIE+NDLT+AGSVLG GKD  DWVQKANIALNKLSSSPEEK+EVDTFNSSLASLVSSVAQNDV+SSKIAFVSSA+A EKWTSLTGLVGKL G+
Sbjct:    1 MASNFLSTANPFHLASSSQSSLVTPTYAYNP--IKCNLKRQLTPCKVVNQPSLSVTKRDISIGFMTSLVLSLSGKGLFDANAAILEADDDVELLEKVKKDRKKRLEKQGVISSSTKETGYLQDLVYKLSEVGQAIEQNDLTSAGSVLGKGKD-ADWVQKANIALNKLSSSPEEKSEVDTFNSSLASLVSSVAQNDVESSKIAFVSSASAIEKWTSLTGLVGKLKGI 223
[Close]
BLAST of Vfaba.Hedin2.R1.4g177280.1 vs. UniProtKB/TrEMBL
Match: tr|I3SHW7|I3SHW7_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 PE=2 SV=1)

HSP 1 Score: 325.865 bits (834), Expect = 1.043e-110
Identity = 181/226 (80.09%), Postives = 197/226 (87.17%), Query Frame = 0 
Query:    1 MATNFLSTANPFHLA--------TPTYVHKNQIIKCNVKRDSSLCKVVNP---SVTKRSISISFVTSMVLSLTGKGLFDANAAILEADDDIELLEKVKKDRIKRLEKQGIISSSTKETGYLQDVVYKLSEVGKAIEKNDLTTAGSVLGSGKDTTDWVQKANIALNKLSSSPEEKTEVDTFNSSLASLVSSVAQNDVKSSKIAFVSSAAAFEKWTSLTGLVGKLNGL 215
            MA+NFLSTANPFHLA        TPTY +    IKCN+KR  + CKVVN    SVTKR ISI F+TS+VLSL+GKGLFDANAAILEADDD ELLEKVKKDR KRLEKQG+ISSSTKETGYLQD+VYKLSEVG+AIE+NDLT+AGSVLG GKD  DWVQKANIALNKLSSSPEEK+EVDTFNSSLASLVSSVAQNDV+SSKIAFVSSA+A EKWTSLTGLVGKL G+
Sbjct:    1 MASNFLSTANPFHLASSSQSSLVTPTYAYNP--IKCNLKRQLTPCKVVNQPSLSVTKRDISIGFMTSLVLSLSGKGLFDANAAILEADDDAELLEKVKKDRKKRLEKQGVISSSTKETGYLQDLVYKLSEVGQAIEQNDLTSAGSVLGKGKD-ADWVQKANIALNKLSSSPEEKSEVDTFNSSLASLVSSVAQNDVESSKIAFVSSASAIEKWTSLTGLVGKLKGI 223
[Close]
BLAST of Vfaba.Hedin2.R1.4g177280.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2YQU7|A0A1S2YQU7_CICAR (thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Cicer arietinum OX=3827 GN=LOC101504734 PE=4 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 7.168e-105
Identity = 177/224 (79.02%), Postives = 190/224 (84.82%), Query Frame = 0 
Query:    1 MATNFLSTANPFHLATPTYVHKNQI---IKCNVKRDSSLCKVVNP------SVTKRSISISFVTSMVLSLTGKGLFDANAAILEADDDIELLEKVKKDRIKRLEKQGIISSSTKETGYLQDVVYKLSEVGKAIEKNDLTTAGSVLGSGKDTTDWVQKANIALNKLSSSPEEKTEVDTFNSSLASLVSSVAQNDVKSSKIAFVSSAAAFEKWTSLTGLVGKLNGL 215
            MATNFLSTANPFHLA+ +          IK NVKR  +LCKVVN       SVTKR ISISFVTS+VLSL GKG FDANAAILEADDD+ELLEKVKKDR KRLEKQG+ISSSTKE GYLQD+VYKLSEVG+AIEKNDLT+ GSVLG G D TDWVQKANIALNKLSSSPEEK+EV+ FNSSLASLVSSVAQNDV+SSK AFVSSA AFEKWTSLTGLVG+L GL
Sbjct:    1 MATNFLSTANPFHLASSSQSSVPSNSLPIKFNVKRQLTLCKVVNQQALNSLSVTKRGISISFVTSLVLSLGGKGWFDANAAILEADDDVELLEKVKKDRKKRLEKQGVISSSTKEKGYLQDLVYKLSEVGQAIEKNDLTSVGSVLGRGID-TDWVQKANIALNKLSSSPEEKSEVEMFNSSLASLVSSVAQNDVESSKTAFVSSATAFEKWTSLTGLVGQLKGL 223
[Close]
BLAST of Vfaba.Hedin2.R1.4g177280.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6A4PJX5|A0A6A4PJX5_LUPAL (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr13g0301741 PE=4 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 3.667e-104
Identity = 164/233 (70.39%), Postives = 187/233 (80.26%), Query Frame = 0 
Query:    1 MATNFLSTANPFHL-----------ATPTYVHKNQIIKCNVKRDSSLCKVVNPS-------VTKRSISISFVTSMVLSLTGKGLFDANAAILEADDDIELLEKVKKDRIKRLEKQGIISSSTKETGYLQDVVYKLSEVGKAIEKNDLTTAGSVLGSGKDTTDWVQKANIALNKLSSSPEEKTEVDTFNSSLASLVSSVAQNDVKSSKIAFVSSAAAFEKWTSLTGLVGKLNGL 215
            MAT FLST+NPF +           ATPTYV+    IKC+VKR  ++ K VN S       VTKR++SIS +TS + SL+GKG FDANAAILEADDD+ELLEKVKKDR KRLE+QG+ISSSTKETGYLQDVVYKLS+VG+AIE NDLT AGSVLG G D TDWVQKA  AL KLSSSPEEK+EV+ FNSSLASL+SSVAQNDV+SSK+AFVSSA+AFEKW SLTGLV +L GL
Sbjct:    1 MATYFLSTSNPFLVPSSSPSLSLAKATPTYVY--HPIKCSVKRQLTISKAVNKSAIIHTLCVTKRALSISILTSFLFSLSGKGFFDANAAILEADDDVELLEKVKKDRKKRLERQGVISSSTKETGYLQDVVYKLSKVGEAIENNDLTKAGSVLGKGTD-TDWVQKATTALTKLSSSPEEKSEVEAFNSSLASLISSVAQNDVESSKVAFVSSASAFEKWISLTGLVAQLKGL 230
[Close]
BLAST of Vfaba.Hedin2.R1.4g177280.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1J7I2Z4|A0A1J7I2Z4_LUPAN (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_07008 PE=4 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 1.010e-102
Identity = 164/232 (70.69%), Postives = 184/232 (79.31%), Query Frame = 0 
Query:    1 MATNFLSTANPFHL-----------ATPTYVHKNQIIKCNVKRDSSLCKVVNPS------VTKRSISISFVTSMVLSLTGKGLFDANAAILEADDDIELLEKVKKDRIKRLEKQGIISSSTKETGYLQDVVYKLSEVGKAIEKNDLTTAGSVLGSGKDTTDWVQKANIALNKLSSSPEEKTEVDTFNSSLASLVSSVAQNDVKSSKIAFVSSAAAFEKWTSLTGLVGKLNGL 215
            MAT FLST+N F +           ATPTY +    IKC+VKR  ++ KVVN S      VTKR++SIS  TS +LSL+GKG FDANAAILEADDD+ELLEKVKKDR KRLE+QG+ISSSTKETGYLQDVVYKLS+VG+AIE NDL  AGSV G G D TDWVQKA  AL KLSSSPEEKTEVD FNSSLASL+SSVAQNDV+SSK+AFVSSA+AFEKW SLTGLV +L GL
Sbjct:    1 MATYFLSTSNHFLVPSSSPSLSLAKATPTYFYYP--IKCSVKRQLTISKVVNQSAIHTLSVTKRALSISIFTSFMLSLSGKGFFDANAAILEADDDVELLEKVKKDRKKRLERQGVISSSTKETGYLQDVVYKLSKVGEAIENNDLPKAGSVFGKGTD-TDWVQKATTALAKLSSSPEEKTEVDAFNSSLASLISSVAQNDVESSKVAFVSSASAFEKWISLTGLVAQLKGL 229
[Close]
BLAST of Vfaba.Hedin2.R1.4g177280.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0B2NWT6|A0A0B2NWT6_GLYSO (Thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Glycine soja OX=3848 GN=glysoja_047977 PE=4 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 3.043e-101
Identity = 160/232 (68.97%), Postives = 184/232 (79.31%), Query Frame = 0 
Query:    1 MATNFLSTANPFHL---------ATPTYVHKNQIIKCNVKRDSSLCKVVN-PS-------VTKRSISISFVTSMVLSLTGKGLFDANAAILEADDDIELLEKVKKDRIKRLEKQGIISSSTKETGYLQDVVYKLSEVGKAIEKNDLTTAGSVLGSGKDTTDWVQKANIALNKLSSSPEEKTEVDTFNSSLASLVSSVAQNDVKSSKIAFVSSAAAFEKWTSLTGLVGKLNGL 215
            MATN LST+NPF L          TPTYV+ N I+KC VKR+ +LCK  N P+       VTKR +SISF+TS VLSL  K   +ANAAILEADDD ELLEKVK+DR KRLEKQG+ISSS +ETGYLQD+VYKLS VG+A+EKNDL+ AGSVLG   D  DWVQ+ANIA NKLSSSPEEKTEVD+FNSSLASL+SSV++NDV+SSKIAFVSSA AFEKWTS+TGL  +L GL
Sbjct:    1 MATNILSTSNPFLLTNSFSSSSFVTPTYVYYNPIMKCTVKRELTLCKAANQPAPPHSPIVVTKRGLSISFITSFVLSLASKK--NANAAILEADDDEELLEKVKRDRKKRLEKQGVISSSKQETGYLQDLVYKLSTVGQALEKNDLSAAGSVLGGNADA-DWVQRANIAFNKLSSSPEEKTEVDSFNSSLASLISSVSKNDVESSKIAFVSSATAFEKWTSMTGLAAQLKGL 229
[Close]
BLAST of Vfaba.Hedin2.R1.4g177280.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0R0JRN7|A0A0R0JRN7_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100812589 PE=4 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 3.043e-101
Identity = 160/232 (68.97%), Postives = 184/232 (79.31%), Query Frame = 0 
Query:    1 MATNFLSTANPFHL---------ATPTYVHKNQIIKCNVKRDSSLCKVVN-PS-------VTKRSISISFVTSMVLSLTGKGLFDANAAILEADDDIELLEKVKKDRIKRLEKQGIISSSTKETGYLQDVVYKLSEVGKAIEKNDLTTAGSVLGSGKDTTDWVQKANIALNKLSSSPEEKTEVDTFNSSLASLVSSVAQNDVKSSKIAFVSSAAAFEKWTSLTGLVGKLNGL 215
            MATN LST+NPF L          TPTYV+ N I+KC VKR+ +LCK  N P+       VTKR +SISF+TS VLSL  K   +ANAAILEADDD ELLEKVK+DR KRLEKQG+ISSS +ETGYLQD+VYKLS VG+A+EKNDL+ AGSVLG   D  DWVQ+ANIA NKLSSSPEEKTEVD+FNSSLASL+SSV++NDV+SSKIAFVSSA AFEKWTS+TGL  +L GL
Sbjct:    1 MATNILSTSNPFLLTNSFSSSSFVTPTYVYYNPIMKCTVKRELTLCKAANQPAPPHSPIVVTKRGLSISFITSFVLSLASKK--NANAAILEADDDEELLEKVKRDRKKRLEKQGVISSSKQETGYLQDLVYKLSTVGQALEKNDLSAAGSVLGGNADA-DWVQRANIAFNKLSSSPEEKTEVDSFNSSLASLISSVSKNDVESSKIAFVSSATAFEKWTSMTGLAAQLKGL 229
[Close]
BLAST of Vfaba.Hedin2.R1.4g177280.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445KD41|A0A445KD41_GLYSO (Thylakoid lumenal 16.5 kDa protein, chloroplastic isoform A OS=Glycine soja OX=3848 GN=D0Y65_015453 PE=4 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 6.620e-100
Identity = 160/232 (68.97%), Postives = 184/232 (79.31%), Query Frame = 0 
Query:    1 MATNFLSTANPFHL---------ATPTYVHKNQIIKCNVKRDSSLCKVVN-PS-------VTKRSISISFVTSMVLSLTGKGLFDANAAILEADDDIELLEKVKKDRIKRLEKQGIISSSTKETGYLQDVVYKLSEVGKAIEKNDLTTAGSVLGSGKDTTDWVQKANIALNKLSSSPEEKTEVDTFNSSLASLVSSVAQNDVKSSKIAFVSSAAAFEKWTSLTGLVGKLNGL 215
            MATN LST+NPF L          TPTYV+ N I+KC VKR+ +LCK  N P+       VTKR +SISF+TS VLSL  K   +ANAAILEADDD ELLEKVK+DR KRLEKQG+ISSS +ETGYLQD+VYKLS VG+A+EKNDL+ AGSVLG   D  DWVQ+ANIA NKLSSSPEEKTEVD+FNSSLASL+SSV++NDV+SSKIAFVSSA AFEKWTS+TGL  +L GL
Sbjct:   57 MATNILSTSNPFLLTNSFSSSSFVTPTYVYYNPIMKCTVKRELTLCKAANQPAPPHSPIVVTKRGLSISFITSFVLSLASKK--NANAAILEADDDEELLEKVKRDRKKRLEKQGVISSSKQETGYLQDLVYKLSTVGQALEKNDLSAAGSVLGGNADA-DWVQRANIAFNKLSSSPEEKTEVDSFNSSLASLISSVSKNDVESSKIAFVSSATAFEKWTSMTGLAAQLKGL 285
[Close]
BLAST of Vfaba.Hedin2.R1.4g177280.1 vs. UniProtKB/Swiss-Prot
Match: sp|O22773|TL16_ARATH (Thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g02530 PE=1 SV=3)

HSP 1 Score: 220.705 bits (561), Expect = 5.589e-72
Identity = 121/220 (55.00%), Postives = 159/220 (72.27%), Query Frame = 0 
Query:    1 MATNFL--STANPFHLATPTYVHKNQIIKCNVKRDSSLCKVVNPSVTKRSISISFVTSMV---LSLTGKGLFDANAAILEADDDIELLEKVKKDRIKRLEKQGIISSSTKETGYLQDVVYKLSEVGKAIEKNDLTTAGSVLGSGKDTTDWVQKANIALNKLSSSPEEKTEVDTFNSSLASLVSSVAQNDVKSSKIAFVSSAAAFEKWTSLTGLVGKLNGL 215
            MA + L  ST NPF   T +   KNQI      ++ +   ++     +R +S+ F++S+V   L    +   DANAAILEADDD ELLEKVK+DR KR+E+Q +++S+ KE GYLQD+VYKLS+VG+AIE NDL  AG VLG G D T+WV+  N+A  KLS+SPEE TEV+ FNSSLASL++SV +ND++SSK+AFVSSA AFEKWT+LTGL+ +L GL
Sbjct:    1 MAKSLLCSSTLNPFFSTTLSSSKKNQIAYSGNSKNQTSSSLL---WKRRELSLGFMSSLVAIGLVSNDRRRHDANAAILEADDDEELLEKVKQDRKKRIERQAVLNSAVKEKGYLQDLVYKLSKVGQAIENNDLPAAGLVLGKGID-TEWVKTVNLAFTKLSTSPEENTEVEAFNSSLASLITSVNKNDIESSKLAFVSSAGAFEKWTTLTGLLEQLKGL 216
[Close]
BLAST of Vfaba.Hedin2.R1.4g177280.1 vs. Araport11
Match: AT4G02530.1 (| chloroplast thylakoid lumen protein | Chr4:1112335-1114005 REVERSE LENGTH=216 | 201606)

HSP 1 Score: 220.705 bits (561), Expect = 5.718e-73
Identity = 121/220 (55.00%), Postives = 159/220 (72.27%), Query Frame = 0 
Query:    1 MATNFL--STANPFHLATPTYVHKNQIIKCNVKRDSSLCKVVNPSVTKRSISISFVTSMV---LSLTGKGLFDANAAILEADDDIELLEKVKKDRIKRLEKQGIISSSTKETGYLQDVVYKLSEVGKAIEKNDLTTAGSVLGSGKDTTDWVQKANIALNKLSSSPEEKTEVDTFNSSLASLVSSVAQNDVKSSKIAFVSSAAAFEKWTSLTGLVGKLNGL 215
            MA + L  ST NPF   T +   KNQI      ++ +   ++     +R +S+ F++S+V   L    +   DANAAILEADDD ELLEKVK+DR KR+E+Q +++S+ KE GYLQD+VYKLS+VG+AIE NDL  AG VLG G D T+WV+  N+A  KLS+SPEE TEV+ FNSSLASL++SV +ND++SSK+AFVSSA AFEKWT+LTGL+ +L GL
Sbjct:    1 MAKSLLCSSTLNPFFSTTLSSSKKNQIAYSGNSKNQTSSSLL---WKRRELSLGFMSSLVAIGLVSNDRRRHDANAAILEADDDEELLEKVKQDRKKRIERQAVLNSAVKEKGYLQDLVYKLSKVGQAIENNDLPAAGLVLGKGID-TEWVKTVNLAFTKLSTSPEENTEVEAFNSSLASLITSVNKNDIESSKLAFVSSAGAFEKWTTLTGLLEQLKGL 216
[Close]
BLAST of Vfaba.Hedin2.R1.4g177280.1 vs. Araport11
Match: AT4G02530.2 (| chloroplast thylakoid lumen protein | Chr4:1112335-1114155 REVERSE LENGTH=266 | 201606)

HSP 1 Score: 221.09 bits (562), Expect = 2.429e-72
Identity = 121/220 (55.00%), Postives = 159/220 (72.27%), Query Frame = 0 
Query:    1 MATNFL--STANPFHLATPTYVHKNQIIKCNVKRDSSLCKVVNPSVTKRSISISFVTSMV---LSLTGKGLFDANAAILEADDDIELLEKVKKDRIKRLEKQGIISSSTKETGYLQDVVYKLSEVGKAIEKNDLTTAGSVLGSGKDTTDWVQKANIALNKLSSSPEEKTEVDTFNSSLASLVSSVAQNDVKSSKIAFVSSAAAFEKWTSLTGLVGKLNGL 215
            MA + L  ST NPF   T +   KNQI      ++ +   ++     +R +S+ F++S+V   L    +   DANAAILEADDD ELLEKVK+DR KR+E+Q +++S+ KE GYLQD+VYKLS+VG+AIE NDL  AG VLG G D T+WV+  N+A  KLS+SPEE TEV+ FNSSLASL++SV +ND++SSK+AFVSSA AFEKWT+LTGL+ +L GL
Sbjct:   51 MAKSLLCSSTLNPFFSTTLSSSKKNQIAYSGNSKNQTSSSLL---WKRRELSLGFMSSLVAIGLVSNDRRRHDANAAILEADDDEELLEKVKQDRKKRIERQAVLNSAVKEKGYLQDLVYKLSKVGQAIENNDLPAAGLVLGKGID-TEWVKTVNLAFTKLSTSPEENTEVEAFNSSLASLITSVNKNDIESSKLAFVSSAGAFEKWTTLTGLLEQLKGL 266
[Close]
BLAST of Vfaba.Hedin2.R1.4g177280.1 vs. Araport11
Match: AT4G02530.3 (| chloroplast thylakoid lumen protein | Chr4:1112495-1114155 REVERSE LENGTH=249 | 201606)

HSP 1 Score: 168.703 bits (426), Expect = 4.389e-52
Identity = 96/184 (52.17%), Postives = 127/184 (69.02%), Query Frame = 0 
Query:    1 MATNFL--STANPFHLATPTYVHKNQIIKCNVKRDSSLCKVVNPSVTKRSISISFVTSMV---LSLTGKGLFDANAAILEADDDIELLEKVKKDRIKRLEKQGIISSSTKETGYLQDVVYKLSEVGKAIEKNDLTTAGSVLGSGKDTTDWVQKANIALNKLSSSPEEKTEVDTFNSSLASLVSS 179
            MA + L  ST NPF   T +   KNQI      ++ +   ++     +R +S+ F++S+V   L    +   DANAAILEADDD ELLEKVK+DR KR+E+Q +++S+ KE GYLQD+VYKLS+VG+AIE NDL  AG VLG G D T+WV+  N+A  KLS+SPEE TEV+ FNSSLASL++S
Sbjct:   51 MAKSLLCSSTLNPFFSTTLSSSKKNQIAYSGNSKNQTSSSLL---WKRRELSLGFMSSLVAIGLVSNDRRRHDANAAILEADDDEELLEKVKQDRKKRIERQAVLNSAVKEKGYLQDLVYKLSKVGQAIENNDLPAAGLVLGKGID-TEWVKTVNLAFTKLSTSPEENTEVEAFNSSLASLITS 230
The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.4g177280.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A2Z6MYZ7|A0A2Z6MYZ7_TRISU1.964e-11783.93Uncharacterized protein OS=Trifolium subterraneum ... [more]
tr|A0A072TFC5|A0A072TFC5_MEDTR1.583e-11180.09Thylakoid lumenal 16.5 kDa protein OS=Medicago tru... [more]
tr|A0A396IEE9|A0A396IEE9_MEDTR3.160e-11180.09Uncharacterized protein OS=Medicago truncatula OX=... [more]
tr|I3SHW7|I3SHW7_MEDTR1.043e-11080.09Uncharacterized protein OS=Medicago truncatula OX=... [more]
tr|A0A1S2YQU7|A0A1S2YQU7_CICAR7.168e-10579.02thylakoid lumenal 16.5 kDa protein, chloroplastic ... [more]
tr|A0A6A4PJX5|A0A6A4PJX5_LUPAL3.667e-10470.39Uncharacterized protein OS=Lupinus albus OX=3870 G... [more]
tr|A0A1J7I2Z4|A0A1J7I2Z4_LUPAN1.010e-10270.69Uncharacterized protein OS=Lupinus angustifolius O... [more]
tr|A0A0B2NWT6|A0A0B2NWT6_GLYSO3.043e-10168.97Thylakoid lumenal 16.5 kDa protein, chloroplastic ... [more]
tr|A0A0R0JRN7|A0A0R0JRN7_SOYBN3.043e-10168.97Uncharacterized protein OS=Glycine max OX=3847 GN=... [more]
tr|A0A445KD41|A0A445KD41_GLYSO6.620e-10068.97Thylakoid lumenal 16.5 kDa protein, chloroplastic ... [more]
back to top
BLAST of Vfaba.Hedin2.R1.4g177280.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
sp|O22773|TL16_ARATH5.589e-7255.00Thylakoid lumenal 16.5 kDa protein, chloroplastic ... [more]
back to top
BLAST of Vfaba.Hedin2.R1.4g177280.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11)
Total hits: 3
Match NameE-valueIdentityDescription
AT4G02530.15.718e-7355.00| chloroplast thylakoid lumen protein | Chr4:11123... [more]
AT4G02530.22.429e-7255.00| chloroplast thylakoid lumen protein | Chr4:11123... [more]
AT4G02530.34.389e-5252.17| chloroplast thylakoid lumen protein | Chr4:11124... [more]
back to top
InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038862Chloroplast thylakoid lumenal protein MPH2PANTHERPTHR35742THYLAKOID LUMENAL 16.5 KDA PROTEIN, CHLOROPLASTICcoord: 19..215

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vfaba.Hedin2.R1.4g177280.1_vfh_v1 ID=Vfaba.Hedin2.R1.4g177280.1_vfh_v1; Name=Vfaba.Hedin2.R1.4g177280.1; organism=Vicia faba; type=mRNA; length=648bp
ATGGCAACAAATTTTCTCTCAACAGCAAACCCTTTTCATCTAGCAACACC
AACCTATGTTCACAAGAACCAAATCATCAAATGCAATGTGAAAAGAGATT
CATCACTTTGCAAAGTAGTGAATCCAAGTGTGACCAAAAGAAGCATATCC
ATTAGTTTTGTTACCAGTATGGTCCTTTCATTGACTGGTAAAGGCTTGTT
TGATGCTAATGCTGCAATACTTGAAGCAGATGATGATATTGAGCTCTTGG
AAAAAGTGAAGAAGGATAGAATCAAGAGACTTGAGAAACAAGGTATTATC
AGTTCCTCCACCAAAGAAACAGGGTATCTTCAGGATGTGGTGTACAAATT
GAGTGAAGTTGGTAAAGCAATTGAAAAGAATGATCTAACCACAGCTGGTT
CTGTCTTAGGGAGTGGCAAGGATACTACTGATTGGGTCCAAAAAGCCAAC
ATAGCTTTGAATAAGCTGAGTTCTAGTCCTGAAGAGAAAACTGAGGTGGA
CACATTCAATTCCTCACTTGCTTCATTGGTTTCATCAGTTGCTCAGAATG
ATGTGAAGTCCTCCAAAATTGCCTTTGTGTCTTCAGCCGCCGCATTTGAG
AAGTGGACCTCCTTGACAGGGCTGGTTGGTAAACTGAATGGGCTTTGA
back to top

protein sequence of Vfaba.Hedin2.R1.4g177280.1_vfh_v1

>Vfaba.Hedin2.R1.4g177280.1_vfh_v1 ID=Vfaba.Hedin2.R1.4g177280.1_vfh_v1; Name=Vfaba.Hedin2.R1.4g177280.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=215bp
MATNFLSTANPFHLATPTYVHKNQIIKCNVKRDSSLCKVVNPSVTKRSIS
ISFVTSMVLSLTGKGLFDANAAILEADDDIELLEKVKKDRIKRLEKQGII
SSSTKETGYLQDVVYKLSEVGKAIEKNDLTTAGSVLGSGKDTTDWVQKAN
IALNKLSSSPEEKTEVDTFNSSLASLVSSVAQNDVKSSKIAFVSSAAAFE
KWTSLTGLVGKLNGL
back to top

mRNA from alignment at chr4:1222810110..1222811568+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vfaba.Hedin2.R1.4g177280.1_vfh_v1 ID=Vfaba.Hedin2.R1.4g177280.1_vfh_v1; Name=Vfaba.Hedin2.R1.4g177280.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr4:1222810110..1222811568+ (Vicia faba
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR038862MPH2
Vocabulary: Biological Process
TermDefinition
GO:0010206photosystem II repair