Vfaba.Hedin2.R1.4g236480.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. UniProtKB/TrEMBL
Match: tr|G7J7U0|G7J7U0_MEDTR (Putative ribosome-binding factor A, K domain-like, alpha/beta OS=Medicago truncatula OX=3880 GN=11428164 PE=3 SV=1) HSP 1 Score: 226.483 bits (576), Expect = 1.041e-71 Identity = 138/231 (59.74%), Postives = 158/231 (68.40%), Query Frame = 0 Query: 1 MSTTQLFHT--ALPPSLTPCCRCNNNIRVTATAQ-GLKHGWVLQSTINTNTKKAVVGSRMIK---------------------------SSFGADTYLSSVTTITDVEITADLQVVKVYVSVFGDERGKQVAMAGLKSKAKYVRSELGKRMRLRLTPEIRFLEDESIERGSRVIAILDKIKNEKSGTTQDVEQLDSSADKDDAEQLNSSENDDDPDWDYEEPDEEGIIYVE 201 MSTTQL +T L PS+TPC RCNN+ R ATA + L + T K + R +K +S GAD YLSSVTTITDVEITADLQV +VYVSVFGDERGK+VAMAGLKSKAKYVR ELG+RM+LRLTPEIRFLEDES ERGSRVIAILDKIKNEKS T++++EQLDSS + DD EQLNSS +D+D +E EEGIIYVE Sbjct: 1 MSTTQLLNTVAGLIPSVTPCWRCNNH-RTAATATVTIFQTQRLTGNASRITIKCMANPRRVKMVAKQIRRELSDMLITDNVLQFAVLPEASLGADLYLSSVTTITDVEITADLQVARVYVSVFGDERGKEVAMAGLKSKAKYVRGELGRRMKLRLTPEIRFLEDESFERGSRVIAILDKIKNEKSETSKNMEQLDSSVNGDDTEQLNSS-SDEDDADWEDEDPEEGIIYVE 229
BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3MSL2|A0A2K3MSL2_TRIPR (Putative ribosome-binding factor A chloroplastic-like OS=Trifolium pratense OX=57577 GN=L195_g016855 PE=3 SV=1) HSP 1 Score: 218.779 bits (556), Expect = 1.644e-68 Identity = 126/219 (57.53%), Postives = 149/219 (68.04%), Query Frame = 0 Query: 1 MSTTQLF--HTALPPSLTPCCRCNNNIRVTATAQGLKHGWVLQSTINTNTKKAVVGSRMI-------------------------------------KSSFGADTYLSSVTTITDVEITADLQVVKVYVSVFGDERGKQVAMAGLKSKAKYVRSELGKRMRLRLTPEIRFLEDESIERGSRVIAILDKIK-NEKSGTTQDVEQLDSSADKDDAEQLNSS 179 MSTTQL HTA PSLTPCCRCNNN T T + L TKKAV GSR I ++S GAD+YLSSVTTITDVEIT DLQ+ KVYVSVFGDERGK++A+AGLK+KAKYVR++LG+RM+LRLTPEIRF+EDES ERGSRVIAILDK+K E+S T+Q++EQLDSSA++D++EQLNSS Sbjct: 1 MSTTQLLLLHTAFIPSLTPCCRCNNNNISTTTTATIIQTQFL------TTKKAVTGSRRIIKCMANPKRVKMVAKQIRREIADMLITDNVLQFAVLPEASLGADSYLSSVTTITDVEITGDLQLAKVYVSVFGDERGKEMALAGLKAKAKYVRTQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDKLKEEEESRTSQNIEQLDSSANQDESEQLNSS 213
BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3E7M0|A0A1S3E7M0_CICAR (probable ribosome-binding factor A, chloroplastic OS=Cicer arietinum OX=3827 GN=LOC101505887 PE=3 SV=1) HSP 1 Score: 217.238 bits (552), Expect = 6.648e-68 Identity = 141/241 (58.51%), Postives = 161/241 (66.80%), Query Frame = 0 Query: 1 MSTTQLFHTALPPSLTPCCRCNNNIRVTATAQGL---KHGWV-LQSTINTNTKKAVVGSRMIK------------------------------------SSFGADTYLSSVTTITDVEITADLQVVKVYVSVFGDERGKQVAMAGLKSKAKYVRSELGKRMRLRLTPEIRFLEDESIERGSRVIAILDKIKNEKSGTTQDVEQLDSSADKDDAEQLNSSENDDDPDWDYEEPDEEGIIYVE 201 MSTTQ+ HTAL PC R N+ TAT+ + + WV L T N NT K SRMI+ +S GAD+YLSSVTTITDV+IT DLQVV+VYVSVFGD RGK+VAMAGLKSKAKYVRSELG+RM+LRLTPEIRF+EDES ERGSRVI ILDKIKNEKSGT+Q E LDSSA++DD EQL+SSENDDD D +E +EGIIYVE Sbjct: 1 MSTTQVVHTAL----MPCWRRCYNLPTTATSSIIPMQRSVWVPLTITGNANTNKC---SRMIRCMANPRRVKMVAKQIRRELSDMLITDNVLQFAILPEASLGADSYLSSVTTITDVQITTDLQVVRVYVSVFGDARGKEVAMAGLKSKAKYVRSELGRRMKLRLTPEIRFIEDESFERGSRVIEILDKIKNEKSGTSQSTELLDSSANEDDIEQLSSSENDDDAD-WDDEDPDEGIIYVE 233
BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. UniProtKB/TrEMBL
Match: tr|V7ATH5|V7ATH5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_009G002100g PE=3 SV=1) HSP 1 Score: 199.134 bits (505), Expect = 3.986e-61 Identity = 116/226 (51.33%), Postives = 141/226 (62.39%), Query Frame = 0 Query: 11 LPPSLTPCCRCNNNIRVTATAQGLKHGWVLQSTINTNTKKAVVGSR-----------------------------------MIKSSFGADTYLSSVTTITDVEITADLQVVKVYVSVFGDERGKQVAMAGLKSKAKYVRSELGKRMRLRLTPEIRFLEDESIERGSRVIAILDKIKNEKSGTTQDVEQLDSSADKDDAEQLNSSENDDDPDWDYEEPDEEGIIYVE 201 L P+L C C N G V + + +KAVVGSR + ++S GAD YLSS+TTITDV+++ DLQVVKV+VSVFGDERG++VA+AGLKSKAKYVRSELGKRM+LRLTPEIRFLED+S E+GSRVIAILDKIKNEKS +Q+ EQLD SS+N+DD +WD E+P EEG+IYVE Sbjct: 2 LHPALVASCPCLNPYPWRHHFPGAGTVTVRMTPMRIVREKAVVGSRIRCMANPRRVQMVAKQIRRELSDMLLTDKVLQYAILPETSLGADRYLSSLTTITDVQVSGDLQVVKVFVSVFGDERGREVAIAGLKSKAKYVRSELGKRMKLRLTPEIRFLEDDSFEKGSRVIAILDKIKNEKSSGSQNKEQLD------------SSKNEDDDNWDGEDP-EEGVIYVE 214
BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A3Q0FBR6|A0A3Q0FBR6_VIGRR (probable ribosome-binding factor A, chloroplastic OS=Vigna radiata var. radiata OX=3916 GN=LOC106770923 PE=3 SV=1) HSP 1 Score: 191.815 bits (486), Expect = 1.087e-58 Identity = 99/143 (69.23%), Postives = 119/143 (83.22%), Query Frame = 0 Query: 59 KSSFGADTYLSSVTTITDVEITADLQVVKVYVSVFGDERGKQVAMAGLKSKAKYVRSELGKRMRLRLTPEIRFLEDESIERGSRVIAILDKIKNEKSGTTQDVEQLDSSADKDDAEQLNSSENDDDPDWDYEEPDEEGIIYVE 201 ++S GAD YLSS+TT+TDV+++ DLQVVKV+VSVFGDERG++VA+AGLKSKAKYVRSELGKRM+LRLTPEIRF+ED+S E+GSRVIAILDKIKNEKS +Q + EQLNSS N+DD DWD E+ EEG+IYVE Sbjct: 51 ETSLGADRYLSSLTTVTDVQVSGDLQVVKVFVSVFGDERGREVAIAGLKSKAKYVRSELGKRMKLRLTPEIRFIEDDSFEKGSRVIAILDKIKNEKSSGSQ------------NKEQLNSSTNEDD-DWDGEDL-EEGVIYVE 179
BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2P5FQ96|A0A2P5FQ96_TREOI (Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_043740 PE=3 SV=1) HSP 1 Score: 192.2 bits (487), Expect = 2.163e-58 Identity = 108/201 (53.73%), Postives = 139/201 (69.15%), Query Frame = 0 Query: 2 STTQLFHTALPPSLTPCCRCNNNIR-VTATAQGLKHGWVLQSTINTNTKKAVVGSRMIKSSFGADTYLSSVTTITDVEITADLQVVKVYVSVFGDERGKQVAMAGLKSKAKYVRSELGKRMRLRLTPEIRFLEDESIERGSRVIAILDKIKNEKSGTTQDVEQLDSSADKDDAEQLNSSENDDDPDWDYEEPDEEGIIYVE 201 S+T L PP T RC R V A+ ++ +T + A++ +++ GAD YLSS+TTI+DVE+++DLQVVKVYVSVFGDERGK+VA++GLKSKAKYVRSELG+RM+LRLTPEIRF+EDES+ERGSRVIAILD+IKNEK T +D DD E +S DD DW+ ++PDE+ IIYV+ Sbjct: 33 SSTALTVRLSPPRFT-TIRCMAKPRRVAMVAKQIRRELSDMLLTDTTLQYAILP----EAALGADRYLSSLTTISDVEVSSDLQVVKVYVSVFGDERGKEVALSGLKSKAKYVRSELGRRMKLRLTPEIRFIEDESLERGSRVIAILDRIKNEKKTTERD----------DDEENESSDALQDDKDWESDDPDED-IIYVK 217
BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A5N6QQP7|A0A5N6QQP7_9ROSI (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_005124 PE=3 SV=1) HSP 1 Score: 192.2 bits (487), Expect = 3.252e-58 Identity = 114/208 (54.81%), Postives = 144/208 (69.23%), Query Frame = 0 Query: 2 STTQLFHTALP---PSLTPCC----RCNNNIR-VTATAQGLKHGWVLQSTINTNTKKAVVGSRMIKSSFGADTYLSSVTTITDVEITADLQVVKVYVSVFGDERGKQVAMAGLKSKAKYVRSELGKRMRLRLTPEIRFLEDESIERGSRVIAILDKIKNEKSGTTQDVEQLDSSADKDDAEQLNSSE-NDDDPDWDYEEPDEEGIIYV 200 + T H+A P PSL P RC N R V A+ ++ L + T+ K + + + ++S GAD YLSS+TTI+DVE++ DLQVVKVYVSVFGDERGK++A+AGLK+KAKYVRSELG+RM+LRLTPEIRF+EDESIERGSRVIAILDKIKNEK T D D EQ NS + + +D DW+ ++PDE+ IIYV Sbjct: 29 NPTAWIHSARPIGMPSLQPTVGSTIRCMANPRRVKMVAKQIQRE--LSDMLLTD--KVLQYAILPEASLGADRYLSSLTTISDVEVSGDLQVVKVYVSVFGDERGKELAIAGLKAKAKYVRSELGRRMKLRLTPEIRFIEDESIERGSRVIAILDKIKNEKKTT-----------DSQDEEQFNSPDVSQEDGDWEGDDPDED-IIYV 220
BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A5P1FQ07|A0A5P1FQ07_ASPOF (Uncharacterized protein OS=Asparagus officinalis OX=4686 GN=A4U43_C01F14920 PE=3 SV=1) HSP 1 Score: 190.274 bits (482), Expect = 8.783e-58 Identity = 110/197 (55.84%), Postives = 137/197 (69.54%), Query Frame = 0 Query: 11 LPPSLTPCCR-CNNNIRVTATAQGLKHGWVLQSTIN-----TNTKKAVVGSRMIKSSFGADTYLSSVTTITDVEITADLQVVKVYVSVFGDERGKQVAMAGLKSKAKYVRSELGKRMRLRLTPEIRFLEDESIERGSRVIAILDKIKNEKSGTTQDVEQLDSSADKDDAEQLNSSENDDDPDWDYEEPDEEGIIYVE 201 L PSL P N IRV A + V + + T K + + + ++S GAD YLSS+TTI+DVE++ DLQVVKVYVSVFGDERGK+VA+AGLKSKAKYVRSELG+RM+LRLTPEIRF+EDES+ERGSRVIAILD++KNEKS Q DKD +E N SE +D +WD ++ D EGIIY++ Sbjct: 21 LRPSLRPSTTIARNPIRVRCMANQRRVKMVAKQIMRELSDMLITDKVLQYAVLPEASLGADRYLSSLTTISDVEVSGDLQVVKVYVSVFGDERGKEVAIAGLKSKAKYVRSELGRRMKLRLTPEIRFIEDESLERGSRVIAILDRLKNEKSSDGQ---------DKDQSESHNLSE--EDGEWDKDDTD-EGIIYIK 205
BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2I4E7C6|A0A2I4E7C6_JUGRE (probable ribosome-binding factor A, chloroplastic OS=Juglans regia OX=51240 GN=LOC108986944 PE=3 SV=2) HSP 1 Score: 190.66 bits (483), Expect = 1.053e-57 Identity = 115/208 (55.29%), Postives = 144/208 (69.23%), Query Frame = 0 Query: 2 STTQLFHTALP-------PSLTPCCRCNNNIR-VTATAQGLKHGWVLQSTINTNTKKAVVGSRMIKSSFGADTYLSSVTTITDVEITADLQVVKVYVSVFGDERGKQVAMAGLKSKAKYVRSELGKRMRLRLTPEIRFLEDESIERGSRVIAILDKIKNEKSG-TTQDVEQLDSSADKDDAEQLNSSENDDDPDWDYEEPDEEGIIYV 200 S T F +A P P+ RC N R V A+ ++ +T + A+ + ++S GAD YLSS+TTI+DVE++ DLQVVKVYVSVFGDERGK+VA+AGLKSKAKYVRSELG+RM+LRLTPEIRF+EDES+ERGSRVIAILDKIKNEK+ +QDVEQ DSS N S+ DD +W+ ++PDE+ IIYV Sbjct: 30 SPTAWFLSARPTGFISLRPTTGSTIRCMANPRRVKMVAKQIRRELSDMLLTDTVLQYAI----LPEASLGADRYLSSLTTISDVEVSGDLQVVKVYVSVFGDERGKEVAIAGLKSKAKYVRSELGRRMKLRLTPEIRFIEDESLERGSRVIAILDKIKNEKNNEESQDVEQSDSS---------NVSQ--DDREWEGDDPDED-IIYV 221
BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A371DZH7|A0A371DZH7_MUCPR (Putative ribosome-binding factor A, chloroplastic OS=Mucuna pruriens OX=157652 GN=CR513_62763 PE=3 SV=1) HSP 1 Score: 189.119 bits (479), Expect = 3.306e-57 Identity = 98/147 (66.67%), Postives = 116/147 (78.91%), Query Frame = 0 Query: 48 TKKAVVGSRMIKSSFGADTYLSSVTTITDVEITADLQVVKVYVSVFGDERGKQVAMAGLKSKAKYVRSELGKRMRLRLTPEIRFLEDESIERGSRVIAILDKIKNEKSGTTQDVEQLDSSADKDDAEQLNSSENDDDPDWDYEEPDE 194 T K + + + ++S GAD YLSS+TTITDV+++ DLQVVKVYVSVFGDERGK+VA AGLKSK KYVRSELGKRM+LRLTPEIRF+ED+S E+GSRVIAILDKIK+EKS Q+ EQLDSSA N+DD DWD E P+E Sbjct: 67 TDKVLQYAILPEASLGADRYLSSLTTITDVQVSGDLQVVKVYVSVFGDERGKEVAFAGLKSKTKYVRSELGKRMKLRLTPEIRFIEDDSFEKGSRVIAILDKIKSEKSSGRQNKEQLDSSA------------NEDDDDWDGENPEE 201
BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. UniProtKB/Swiss-Prot
Match: sp|O65693|RBFA_ARATH (Probable ribosome-binding factor A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g34730 PE=2 SV=2) HSP 1 Score: 181.8 bits (460), Expect = 8.545e-57 Identity = 108/212 (50.94%), Postives = 135/212 (63.68%), Query Frame = 0 Query: 2 STTQLFHTALPPSLTPC-----------CRCNNNIR-VTATAQGLKHGWVLQSTINTNTKKAVVGSRMIKSSFGADTYLSSVTTITDVEITADLQVVKVYVSVFGDERGKQVAMAGLKSKAKYVRSELGKRMRLRLTPEIRFLEDESIERGSRVIAILDKIKNEKSGTTQDVEQLDSSADKDDAEQLNSSENDDDPDWDYEEPDEEGIIYVE 201 S TQ FH P S+ P RC N R V A+ + +T + AV+ +++ GAD YLSS+TTI+DVE++ DLQVVKVYVSVFGD+RGK VA+AGLKSKAKYVRSELGKRM+LRLTPE+RF+EDE++ERGSRVIAILDKIK EK E DS+ +DD DW+ ++PDE+ IIYV+ Sbjct: 25 SKTQAFH--FPQSMAPVNLRTNLSVRRTVRCMANPRRVKMVAKQIMRELSDMLLTDTVLQHAVLP----EAALGADRYLSSLTTISDVEVSNDLQVVKVYVSVFGDDRGKDVAIAGLKSKAKYVRSELGKRMKLRLTPEVRFIEDEAMERGSRVIAILDKIKAEKGSGEGKTEPSDST--------------EDDQDWEVDDPDED-IIYVK 215
BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q3M9Q8|RBFA_TRIV2 (Ribosome-binding factor A OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rbfA PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.016e-28 Identity = 53/117 (45.30%), Postives = 80/117 (68.38%), Query Frame = 0 Query: 55 SRMIKSSFGADTYLSSVTTITDVEITADLQVVKVYVSVFGDERGKQVAMAGLKSKAKYVRSELGKRMRLRLTPEIRFLEDESIERGSRVIAILDKIKNEKSGTTQDVEQLDSSADKD 171 S+M+ + D + + ++TDV+++ DLQ K+YVS++G E K MAGLKS +VRSELG R+RLR TPE+ F+ED SIERG++V+ +L+K++N +S D+ D S D+D Sbjct: 19 SQMLINGIKDDRVGTGMVSVTDVDVSGDLQHAKIYVSIYGTEEAKAETMAGLKSATGFVRSELGARVRLRRTPEVTFIEDRSIERGTKVLTLLNKLENARS--LDDIPSADDSLDED 133
BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q8Z0M8|RBFA_NOSS1 (Ribosome-binding factor A OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rbfA PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.073e-28 Identity = 53/117 (45.30%), Postives = 80/117 (68.38%), Query Frame = 0 Query: 55 SRMIKSSFGADTYLSSVTTITDVEITADLQVVKVYVSVFGDERGKQVAMAGLKSKAKYVRSELGKRMRLRLTPEIRFLEDESIERGSRVIAILDKIKNEKSGTTQDVEQLDSSADKD 171 S+M+ + D + + ++TDV+++ DLQ K+YVS++G E K MAGLKS +VRSELG R+RLR TPE+ F+ED SIERG++V+ +L+K++N +S D+ D S D+D Sbjct: 19 SQMLINGIKDDRVGTGMVSVTDVDVSGDLQHAKIYVSIYGTEEAKAETMAGLKSATGFVRSELGARVRLRRTPEVTFIEDRSIERGTKVLTLLNKLENARS--PDDIPSADDSLDED 133
BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. UniProtKB/Swiss-Prot
Match: sp|B0JRP8|RBFA_MICAN (Ribosome-binding factor A OS=Microcystis aeruginosa (strain NIES-843) OX=449447 GN=rbfA PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 1.420e-26 Identity = 51/122 (41.80%), Postives = 81/122 (66.39%), Query Frame = 0 Query: 42 STINTNTKKAVVGSRMIKSSFGADTYLSSVTTITDVEITADLQVVKVYVSVFGDERGKQVAMAGLKSKAKYVRSELGKRMRLRLTPEIRFLEDESIERGSRVIAILDKIKNEKSGTTQDVEQ 163 S +++ K+ V S+M+ D + + ++TDV+++ DLQ K++VS++G+E K MAGLK+ A +VR ELG+R+RLR TPE+ FLED S+ERG R++ +LD IK ++ D E+ Sbjct: 8 SRVSSLIKREV--SQMLLMEIKDDRVGAGMVSVTDVDLSHDLQHAKIFVSIYGNEDAKAETMAGLKASAGFVRRELGQRIRLRRTPEVVFLEDSSLERGDRMLHLLDHIKTDRPPEDDDSEE 127
BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q93LL7|RBFA_NOSP7 (Ribosome-binding factor A OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) OX=63737 GN=rbfA PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 1.588e-26 Identity = 50/118 (42.37%), Postives = 82/118 (69.49%), Query Frame = 0 Query: 55 SRMIKSSFGADTYLSSVTTITDVEITADLQVVKVYVSVFGDERGKQVAMAGLKSKAKYVRSELGKRMRLRLTPEIRFLEDESIERGSRVIAILDKIKNEKSGTTQDVEQLDSSADKDD 172 S+M+ + D + + ++TDV+++ DLQ K+YVS++G + K MAGLKS YVRSELG R+RLR TPE+ FLED SIERG++V+A+L ++ +++ +++ ++ + D+DD Sbjct: 19 SQMLLNGIKDDRVGTGMVSVTDVDVSGDLQHAKIYVSIYGTDEAKVETMAGLKSATGYVRSELGARVRLRRTPEVIFLEDRSIERGNKVLALLSQLNHDRP--PENLLAVEDNTDEDD 134
BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. UniProtKB/Swiss-Prot
Match: sp|B8HWS1|RBFA_CYAP4 (Ribosome-binding factor A OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=395961 GN=rbfA PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 2.696e-26 Identity = 46/100 (46.00%), Postives = 72/100 (72.00%), Query Frame = 0 Query: 55 SRMIKSSFGADTYLSSVTTITDVEITADLQVVKVYVSVFGDERGKQVAMAGLKSKAKYVRSELGKRMRLRLTPEIRFLEDESIERGSRVIAILDKIKNEK 154 S+M+ S D S + ++TDV+++ DLQ K++VS++G E + MAGLK+ YVRSELG R+RLR TPE+ FLED S+ERG++V+++L+++ E+ Sbjct: 19 SQMLMSGIKDDRVGSGMVSVTDVDLSGDLQHAKIFVSIYGTEAARAETMAGLKAATGYVRSELGHRVRLRRTPEVVFLEDRSLERGTQVLSLLNRLSEER 118
BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q8DIF9|RBFA_THEEB (Ribosome-binding factor A OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=rbfA PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.304e-24 Identity = 42/87 (48.28%), Postives = 68/87 (78.16%), Query Frame = 0 Query: 69 SSVTTITDVEITADLQVVKVYVSVFGDERGKQVAMAGLKSKAKYVRSELGKRMRLRLTPEIRFLEDESIERGSRVIAILDKIKNEKS 155 + + ++TDVE++ DLQ K++VS++ E ++ MAGLK+ + +VR ELG+R+RLR TPE+ F+ED S+ERGSRV+A+L++I ++S Sbjct: 33 AGMVSVTDVEVSGDLQHAKIFVSIYSTEEVRRSTMAGLKAASGFVRRELGQRIRLRRTPEVVFIEDRSLERGSRVLALLNQIGQQQS 119
BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q55625|RBFA_SYNY3 (Ribosome-binding factor A OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rbfA PE=1 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 2.089e-24 Identity = 50/125 (40.00%), Postives = 81/125 (64.80%), Query Frame = 0 Query: 42 STINTNTKKAVVGSRMIKSSFGADTYLSSVTTITDVEITADLQVVKVYVSVFGDERGKQVAMAGLKSKAKYVRSELGKRMRLRLTPEIRFLEDESIERGSRVIAILDKIKNEKSGTTQDVEQLDS 166 S +++ K+ V S+M+ D + + ++T+VE++ DLQ K++VS++G K MAGL S A +VR ELG+RMRLR TPE+ FLED S+ERG +++ +L+ + ++ T+D+E DS Sbjct: 8 SRVSSLIKREV--SQMLLHEIKDDRVGTGMVSVTEVEVSGDLQHAKIFVSIYGSPEAKASTMAGLHSAAPFVRRELGQRMRLRRTPEVSFLEDRSLERGDKILNLLNNLP--QAIATEDLEDDDS 128
BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q110L1|RBFA_TRIEI (Ribosome-binding factor A OS=Trichodesmium erythraeum (strain IMS101) OX=203124 GN=rbfA PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 7.836e-24 Identity = 43/102 (42.16%), Postives = 71/102 (69.61%), Query Frame = 0 Query: 71 VTTITDVEITADLQVVKVYVSVFGDERGKQVAMAGLKSKAKYVRSELGKRMRLRLTPEIRFLEDESIERGSRVIAILDKIKNEKSGTTQDVEQLDSSADKDD 172 + ++TDV+++ DLQ KV+VS++G + + MAGL+S YVRSELGKR+R+R TPE+ F+ED S+ERG+ ++++L+K+ E+ Q++E + D Sbjct: 35 MVSVTDVDVSGDLQHAKVFVSIYGSDEVRSQTMAGLRSATGYVRSELGKRIRMRRTPEVIFVEDRSLERGTEILSLLNKLSQERQ--QQEIEDITHKESHQD 134
BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. UniProtKB/Swiss-Prot
Match: sp|B7KDJ9|RBFA_GLOC7 (Ribosome-binding factor A OS=Gloeothece citriformis (strain PCC 7424) OX=65393 GN=rbfA PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 1.035e-23 Identity = 46/113 (40.71%), Postives = 76/113 (67.26%), Query Frame = 0 Query: 42 STINTNTKKAVVGSRMIKSSFGADTYLSSVTTITDVEITADLQVVKVYVSVFGDERGKQVAMAGLKSKAKYVRSELGKRMRLRLTPEIRFLEDESIERGSRVIAILDKIKNEK 154 S +++ K+ V S+M+ D + + +ITDV+++ DLQ K++VS++G E+ K M GLKS +VR ELG+R+RLR TPE+ FLED S+ERG R + +L+++++ + Sbjct: 8 SRVSSLIKREV--SQMLLHGIKDDRVGAGMVSITDVDVSGDLQHAKIFVSIYGTEQAKAETMEGLKSSVGFVRRELGQRIRLRRTPEVVFLEDTSLERGDRTLHLLNQLQDAR 118
BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. Araport11
Match: AT4G34730.3 (| ribosome-binding factor A family protein | Chr4:16570019-16571274 REVERSE LENGTH=215 | 201606) HSP 1 Score: 181.8 bits (460), Expect = 8.742e-58 Identity = 108/212 (50.94%), Postives = 135/212 (63.68%), Query Frame = 0 Query: 2 STTQLFHTALPPSLTPC-----------CRCNNNIR-VTATAQGLKHGWVLQSTINTNTKKAVVGSRMIKSSFGADTYLSSVTTITDVEITADLQVVKVYVSVFGDERGKQVAMAGLKSKAKYVRSELGKRMRLRLTPEIRFLEDESIERGSRVIAILDKIKNEKSGTTQDVEQLDSSADKDDAEQLNSSENDDDPDWDYEEPDEEGIIYVE 201 S TQ FH P S+ P RC N R V A+ + +T + AV+ +++ GAD YLSS+TTI+DVE++ DLQVVKVYVSVFGD+RGK VA+AGLKSKAKYVRSELGKRM+LRLTPE+RF+EDE++ERGSRVIAILDKIK EK E DS+ +DD DW+ ++PDE+ IIYV+ Sbjct: 25 SKTQAFH--FPQSMAPVNLRTNLSVRRTVRCMANPRRVKMVAKQIMRELSDMLLTDTVLQHAVLP----EAALGADRYLSSLTTISDVEVSNDLQVVKVYVSVFGDDRGKDVAIAGLKSKAKYVRSELGKRMKLRLTPEVRFIEDEAMERGSRVIAILDKIKAEKGSGEGKTEPSDST--------------EDDQDWEVDDPDED-IIYVK 215
BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. Araport11
Match: AT4G34730.2 (| ribosome-binding factor A family protein | Chr4:16570019-16571274 REVERSE LENGTH=215 | 201606) HSP 1 Score: 181.8 bits (460), Expect = 8.742e-58 Identity = 108/212 (50.94%), Postives = 135/212 (63.68%), Query Frame = 0 Query: 2 STTQLFHTALPPSLTPC-----------CRCNNNIR-VTATAQGLKHGWVLQSTINTNTKKAVVGSRMIKSSFGADTYLSSVTTITDVEITADLQVVKVYVSVFGDERGKQVAMAGLKSKAKYVRSELGKRMRLRLTPEIRFLEDESIERGSRVIAILDKIKNEKSGTTQDVEQLDSSADKDDAEQLNSSENDDDPDWDYEEPDEEGIIYVE 201 S TQ FH P S+ P RC N R V A+ + +T + AV+ +++ GAD YLSS+TTI+DVE++ DLQVVKVYVSVFGD+RGK VA+AGLKSKAKYVRSELGKRM+LRLTPE+RF+EDE++ERGSRVIAILDKIK EK E DS+ +DD DW+ ++PDE+ IIYV+ Sbjct: 25 SKTQAFH--FPQSMAPVNLRTNLSVRRTVRCMANPRRVKMVAKQIMRELSDMLLTDTVLQHAVLP----EAALGADRYLSSLTTISDVEVSNDLQVVKVYVSVFGDDRGKDVAIAGLKSKAKYVRSELGKRMKLRLTPEVRFIEDEAMERGSRVIAILDKIKAEKGSGEGKTEPSDST--------------EDDQDWEVDDPDED-IIYVK 215
BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. Araport11
Match: AT4G34730.1 (| ribosome-binding factor A family protein | Chr4:16570019-16571274 REVERSE LENGTH=215 | 201606) HSP 1 Score: 181.8 bits (460), Expect = 8.742e-58 Identity = 108/212 (50.94%), Postives = 135/212 (63.68%), Query Frame = 0 Query: 2 STTQLFHTALPPSLTPC-----------CRCNNNIR-VTATAQGLKHGWVLQSTINTNTKKAVVGSRMIKSSFGADTYLSSVTTITDVEITADLQVVKVYVSVFGDERGKQVAMAGLKSKAKYVRSELGKRMRLRLTPEIRFLEDESIERGSRVIAILDKIKNEKSGTTQDVEQLDSSADKDDAEQLNSSENDDDPDWDYEEPDEEGIIYVE 201 S TQ FH P S+ P RC N R V A+ + +T + AV+ +++ GAD YLSS+TTI+DVE++ DLQVVKVYVSVFGD+RGK VA+AGLKSKAKYVRSELGKRM+LRLTPE+RF+EDE++ERGSRVIAILDKIK EK E DS+ +DD DW+ ++PDE+ IIYV+ Sbjct: 25 SKTQAFH--FPQSMAPVNLRTNLSVRRTVRCMANPRRVKMVAKQIMRELSDMLLTDTVLQHAVLP----EAALGADRYLSSLTTISDVEVSNDLQVVKVYVSVFGDDRGKDVAIAGLKSKAKYVRSELGKRMKLRLTPEVRFIEDEAMERGSRVIAILDKIKAEKGSGEGKTEPSDST--------------EDDQDWEVDDPDED-IIYVK 215 The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL) Total hits: 10
BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot) Total hits: 10
BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11) Total hits: 3
InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vfaba.Hedin2.R1.4g236480.1_vfh_v1 ID=Vfaba.Hedin2.R1.4g236480.1_vfh_v1; Name=Vfaba.Hedin2.R1.4g236480.1; organism=Vicia faba; type=mRNA; length=606bpback to top protein sequence of Vfaba.Hedin2.R1.4g236480.1_vfh_v1 >Vfaba.Hedin2.R1.4g236480.1_vfh_v1 ID=Vfaba.Hedin2.R1.4g236480.1_vfh_v1; Name=Vfaba.Hedin2.R1.4g236480.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=201bpback to top mRNA from alignment at chr4:1600485985..1600487600+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>Vfaba.Hedin2.R1.4g236480.1_vfh_v1 ID=Vfaba.Hedin2.R1.4g236480.1_vfh_v1; Name=Vfaba.Hedin2.R1.4g236480.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr4:1600485985..1600487600+ (Vicia fababack to top |