Vfaba.Hedin2.R1.4g236480.1

Transcript Overview
NameVfaba.Hedin2.R1.4g236480.1
Unique NameVfaba.Hedin2.R1.4g236480.1_vfh_v1
TypemRNA
OrganismVicia faba (Faba bean)
Sequence length606
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr4chromosomechr4:1600485985..1600487600 +Vicia faba inbred line Hedin/2 genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vfhzwsR421Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
asvfhL614Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cavfhL431Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvfhL1110Cajanus cajan Asha genome v1.0Cajanus cajan
pvvfhL863Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
tifvfhL312Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuR531Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caivfhL609Cicer arietinum ICC 4958 genome v2Cicer arietinum
vfhvrvR510Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvuaR475Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
avjvfhL629Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvfhL379Cicer arietinum
vfhvumR580Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvvaR517Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vasvfhL296Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vfhvstR558Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vfhvunR491Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Vigan.02G012600.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
LR48_mrnaVigan04g248200Vigna angularis Jingnong 6 genome v1.1Vigna angularis
rna-KK1_019559Cajanus cajan Asha genome v1.0Cajanus cajan
Vigst.02G007600.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Vum_02G00079.1Vigna umbellata FF25 genome v1.0Vigna umbellata
evm.model.Chr09.1080Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
XM_058929692.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vigun09g270700.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
rna-XM_022781088.1Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vigun09g270700.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Phvul.009G002100.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Psat05G0010400-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Va04G071680.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Ca_14442.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Ca_04742Cicer arietinum CDC Frontier genome v1.0Cicer arietinum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vfaba.Tiffany.R1.4g180960.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.4g236480Vfaba.Hedin2.R1.4g236480_vfh_v1Vicia fabagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.4g236480.1_vfh_v1-exonVfaba.Hedin2.R1.4g236480.1_vfh_v1-exon-chr4_vfh_v1:1600485985..1600486162Vicia fabaexon
Vfaba.Hedin2.R1.4g236480.1_vfh_v1-exonVfaba.Hedin2.R1.4g236480.1_vfh_v1-exon-chr4_vfh_v1:1600486271..1600486344Vicia fabaexon
Vfaba.Hedin2.R1.4g236480.1_vfh_v1-exonVfaba.Hedin2.R1.4g236480.1_vfh_v1-exon-chr4_vfh_v1:1600486491..1600486664Vicia fabaexon
Vfaba.Hedin2.R1.4g236480.1_vfh_v1-exonVfaba.Hedin2.R1.4g236480.1_vfh_v1-exon-chr4_vfh_v1:1600487421..1600487600Vicia fabaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.4g236480.1_vfh_v1-cdsVfaba.Hedin2.R1.4g236480.1_vfh_v1-cds-chr4_vfh_v1:1600485985..1600486162Vicia fabaCDS
Vfaba.Hedin2.R1.4g236480.1_vfh_v1-cdsVfaba.Hedin2.R1.4g236480.1_vfh_v1-cds-chr4_vfh_v1:1600486271..1600486344Vicia fabaCDS
Vfaba.Hedin2.R1.4g236480.1_vfh_v1-cdsVfaba.Hedin2.R1.4g236480.1_vfh_v1-cds-chr4_vfh_v1:1600486491..1600486664Vicia fabaCDS
Vfaba.Hedin2.R1.4g236480.1_vfh_v1-cdsVfaba.Hedin2.R1.4g236480.1_vfh_v1-cds-chr4_vfh_v1:1600487421..1600487600Vicia fabaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.4g236480.1_vfh_v1Vfaba.Hedin2.R1.4g236480.1_vfh_v1Vicia fabapolypeptide
Vfaba.Hedin2.R1.4g236480.1_vfh_v1Vfaba.Hedin2.R1.4g236480.1_vfh_v1-proteinVicia fabapolypeptide


Homology
BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. UniProtKB/TrEMBL
Match: tr|G7J7U0|G7J7U0_MEDTR (Putative ribosome-binding factor A, K domain-like, alpha/beta OS=Medicago truncatula OX=3880 GN=11428164 PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.041e-71
Identity = 138/231 (59.74%), Postives = 158/231 (68.40%), Query Frame = 0
Query:    1 MSTTQLFHT--ALPPSLTPCCRCNNNIRVTATAQ-GLKHGWVLQSTINTNTKKAVVGSRMIK---------------------------SSFGADTYLSSVTTITDVEITADLQVVKVYVSVFGDERGKQVAMAGLKSKAKYVRSELGKRMRLRLTPEIRFLEDESIERGSRVIAILDKIKNEKSGTTQDVEQLDSSADKDDAEQLNSSENDDDPDWDYEEPDEEGIIYVE 201
            MSTTQL +T   L PS+TPC RCNN+ R  ATA   +     L    +  T K +   R +K                           +S GAD YLSSVTTITDVEITADLQV +VYVSVFGDERGK+VAMAGLKSKAKYVR ELG+RM+LRLTPEIRFLEDES ERGSRVIAILDKIKNEKS T++++EQLDSS + DD EQLNSS +D+D     +E  EEGIIYVE
Sbjct:    1 MSTTQLLNTVAGLIPSVTPCWRCNNH-RTAATATVTIFQTQRLTGNASRITIKCMANPRRVKMVAKQIRRELSDMLITDNVLQFAVLPEASLGADLYLSSVTTITDVEITADLQVARVYVSVFGDERGKEVAMAGLKSKAKYVRGELGRRMKLRLTPEIRFLEDESFERGSRVIAILDKIKNEKSETSKNMEQLDSSVNGDDTEQLNSS-SDEDDADWEDEDPEEGIIYVE 229          
BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3MSL2|A0A2K3MSL2_TRIPR (Putative ribosome-binding factor A chloroplastic-like OS=Trifolium pratense OX=57577 GN=L195_g016855 PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.644e-68
Identity = 126/219 (57.53%), Postives = 149/219 (68.04%), Query Frame = 0
Query:    1 MSTTQLF--HTALPPSLTPCCRCNNNIRVTATAQGLKHGWVLQSTINTNTKKAVVGSRMI-------------------------------------KSSFGADTYLSSVTTITDVEITADLQVVKVYVSVFGDERGKQVAMAGLKSKAKYVRSELGKRMRLRLTPEIRFLEDESIERGSRVIAILDKIK-NEKSGTTQDVEQLDSSADKDDAEQLNSS 179
            MSTTQL   HTA  PSLTPCCRCNNN   T T   +     L       TKKAV GSR I                                     ++S GAD+YLSSVTTITDVEIT DLQ+ KVYVSVFGDERGK++A+AGLK+KAKYVR++LG+RM+LRLTPEIRF+EDES ERGSRVIAILDK+K  E+S T+Q++EQLDSSA++D++EQLNSS
Sbjct:    1 MSTTQLLLLHTAFIPSLTPCCRCNNNNISTTTTATIIQTQFL------TTKKAVTGSRRIIKCMANPKRVKMVAKQIRREIADMLITDNVLQFAVLPEASLGADSYLSSVTTITDVEITGDLQLAKVYVSVFGDERGKEMALAGLKAKAKYVRTQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDKLKEEEESRTSQNIEQLDSSANQDESEQLNSS 213          
BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3E7M0|A0A1S3E7M0_CICAR (probable ribosome-binding factor A, chloroplastic OS=Cicer arietinum OX=3827 GN=LOC101505887 PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 6.648e-68
Identity = 141/241 (58.51%), Postives = 161/241 (66.80%), Query Frame = 0
Query:    1 MSTTQLFHTALPPSLTPCCRCNNNIRVTATAQGL---KHGWV-LQSTINTNTKKAVVGSRMIK------------------------------------SSFGADTYLSSVTTITDVEITADLQVVKVYVSVFGDERGKQVAMAGLKSKAKYVRSELGKRMRLRLTPEIRFLEDESIERGSRVIAILDKIKNEKSGTTQDVEQLDSSADKDDAEQLNSSENDDDPDWDYEEPDEEGIIYVE 201
            MSTTQ+ HTAL     PC R   N+  TAT+  +   +  WV L  T N NT K    SRMI+                                    +S GAD+YLSSVTTITDV+IT DLQVV+VYVSVFGD RGK+VAMAGLKSKAKYVRSELG+RM+LRLTPEIRF+EDES ERGSRVI ILDKIKNEKSGT+Q  E LDSSA++DD EQL+SSENDDD D   +E  +EGIIYVE
Sbjct:    1 MSTTQVVHTAL----MPCWRRCYNLPTTATSSIIPMQRSVWVPLTITGNANTNKC---SRMIRCMANPRRVKMVAKQIRRELSDMLITDNVLQFAILPEASLGADSYLSSVTTITDVQITTDLQVVRVYVSVFGDARGKEVAMAGLKSKAKYVRSELGRRMKLRLTPEIRFIEDESFERGSRVIEILDKIKNEKSGTSQSTELLDSSANEDDIEQLSSSENDDDAD-WDDEDPDEGIIYVE 233          
BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. UniProtKB/TrEMBL
Match: tr|V7ATH5|V7ATH5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_009G002100g PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 3.986e-61
Identity = 116/226 (51.33%), Postives = 141/226 (62.39%), Query Frame = 0
Query:   11 LPPSLTPCCRCNNNIRVTATAQGLKHGWVLQSTINTNTKKAVVGSR-----------------------------------MIKSSFGADTYLSSVTTITDVEITADLQVVKVYVSVFGDERGKQVAMAGLKSKAKYVRSELGKRMRLRLTPEIRFLEDESIERGSRVIAILDKIKNEKSGTTQDVEQLDSSADKDDAEQLNSSENDDDPDWDYEEPDEEGIIYVE 201
            L P+L   C C N         G     V  + +    +KAVVGSR                                   + ++S GAD YLSS+TTITDV+++ DLQVVKV+VSVFGDERG++VA+AGLKSKAKYVRSELGKRM+LRLTPEIRFLED+S E+GSRVIAILDKIKNEKS  +Q+ EQLD            SS+N+DD +WD E+P EEG+IYVE
Sbjct:    2 LHPALVASCPCLNPYPWRHHFPGAGTVTVRMTPMRIVREKAVVGSRIRCMANPRRVQMVAKQIRRELSDMLLTDKVLQYAILPETSLGADRYLSSLTTITDVQVSGDLQVVKVFVSVFGDERGREVAIAGLKSKAKYVRSELGKRMKLRLTPEIRFLEDDSFEKGSRVIAILDKIKNEKSSGSQNKEQLD------------SSKNEDDDNWDGEDP-EEGVIYVE 214          
BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A3Q0FBR6|A0A3Q0FBR6_VIGRR (probable ribosome-binding factor A, chloroplastic OS=Vigna radiata var. radiata OX=3916 GN=LOC106770923 PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 1.087e-58
Identity = 99/143 (69.23%), Postives = 119/143 (83.22%), Query Frame = 0
Query:   59 KSSFGADTYLSSVTTITDVEITADLQVVKVYVSVFGDERGKQVAMAGLKSKAKYVRSELGKRMRLRLTPEIRFLEDESIERGSRVIAILDKIKNEKSGTTQDVEQLDSSADKDDAEQLNSSENDDDPDWDYEEPDEEGIIYVE 201
            ++S GAD YLSS+TT+TDV+++ DLQVVKV+VSVFGDERG++VA+AGLKSKAKYVRSELGKRM+LRLTPEIRF+ED+S E+GSRVIAILDKIKNEKS  +Q            + EQLNSS N+DD DWD E+  EEG+IYVE
Sbjct:   51 ETSLGADRYLSSLTTVTDVQVSGDLQVVKVFVSVFGDERGREVAIAGLKSKAKYVRSELGKRMKLRLTPEIRFIEDDSFEKGSRVIAILDKIKNEKSSGSQ------------NKEQLNSSTNEDD-DWDGEDL-EEGVIYVE 179          
BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2P5FQ96|A0A2P5FQ96_TREOI (Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_043740 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.163e-58
Identity = 108/201 (53.73%), Postives = 139/201 (69.15%), Query Frame = 0
Query:    2 STTQLFHTALPPSLTPCCRCNNNIR-VTATAQGLKHGWVLQSTINTNTKKAVVGSRMIKSSFGADTYLSSVTTITDVEITADLQVVKVYVSVFGDERGKQVAMAGLKSKAKYVRSELGKRMRLRLTPEIRFLEDESIERGSRVIAILDKIKNEKSGTTQDVEQLDSSADKDDAEQLNSSENDDDPDWDYEEPDEEGIIYVE 201
            S+T L     PP  T   RC    R V   A+ ++         +T  + A++     +++ GAD YLSS+TTI+DVE+++DLQVVKVYVSVFGDERGK+VA++GLKSKAKYVRSELG+RM+LRLTPEIRF+EDES+ERGSRVIAILD+IKNEK  T +D          DD E  +S    DD DW+ ++PDE+ IIYV+
Sbjct:   33 SSTALTVRLSPPRFT-TIRCMAKPRRVAMVAKQIRRELSDMLLTDTTLQYAILP----EAALGADRYLSSLTTISDVEVSSDLQVVKVYVSVFGDERGKEVALSGLKSKAKYVRSELGRRMKLRLTPEIRFIEDESLERGSRVIAILDRIKNEKKTTERD----------DDEENESSDALQDDKDWESDDPDED-IIYVK 217          
BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A5N6QQP7|A0A5N6QQP7_9ROSI (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_005124 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.252e-58
Identity = 114/208 (54.81%), Postives = 144/208 (69.23%), Query Frame = 0
Query:    2 STTQLFHTALP---PSLTPCC----RCNNNIR-VTATAQGLKHGWVLQSTINTNTKKAVVGSRMIKSSFGADTYLSSVTTITDVEITADLQVVKVYVSVFGDERGKQVAMAGLKSKAKYVRSELGKRMRLRLTPEIRFLEDESIERGSRVIAILDKIKNEKSGTTQDVEQLDSSADKDDAEQLNSSE-NDDDPDWDYEEPDEEGIIYV 200
            + T   H+A P   PSL P      RC  N R V   A+ ++    L   + T+  K +  + + ++S GAD YLSS+TTI+DVE++ DLQVVKVYVSVFGDERGK++A+AGLK+KAKYVRSELG+RM+LRLTPEIRF+EDESIERGSRVIAILDKIKNEK  T           D  D EQ NS + + +D DW+ ++PDE+ IIYV
Sbjct:   29 NPTAWIHSARPIGMPSLQPTVGSTIRCMANPRRVKMVAKQIQRE--LSDMLLTD--KVLQYAILPEASLGADRYLSSLTTISDVEVSGDLQVVKVYVSVFGDERGKELAIAGLKAKAKYVRSELGRRMKLRLTPEIRFIEDESIERGSRVIAILDKIKNEKKTT-----------DSQDEEQFNSPDVSQEDGDWEGDDPDED-IIYV 220          
BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A5P1FQ07|A0A5P1FQ07_ASPOF (Uncharacterized protein OS=Asparagus officinalis OX=4686 GN=A4U43_C01F14920 PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.783e-58
Identity = 110/197 (55.84%), Postives = 137/197 (69.54%), Query Frame = 0
Query:   11 LPPSLTPCCR-CNNNIRVTATAQGLKHGWVLQSTIN-----TNTKKAVVGSRMIKSSFGADTYLSSVTTITDVEITADLQVVKVYVSVFGDERGKQVAMAGLKSKAKYVRSELGKRMRLRLTPEIRFLEDESIERGSRVIAILDKIKNEKSGTTQDVEQLDSSADKDDAEQLNSSENDDDPDWDYEEPDEEGIIYVE 201
            L PSL P      N IRV   A   +   V +  +        T K +  + + ++S GAD YLSS+TTI+DVE++ DLQVVKVYVSVFGDERGK+VA+AGLKSKAKYVRSELG+RM+LRLTPEIRF+EDES+ERGSRVIAILD++KNEKS   Q         DKD +E  N SE  +D +WD ++ D EGIIY++
Sbjct:   21 LRPSLRPSTTIARNPIRVRCMANQRRVKMVAKQIMRELSDMLITDKVLQYAVLPEASLGADRYLSSLTTISDVEVSGDLQVVKVYVSVFGDERGKEVAIAGLKSKAKYVRSELGRRMKLRLTPEIRFIEDESLERGSRVIAILDRLKNEKSSDGQ---------DKDQSESHNLSE--EDGEWDKDDTD-EGIIYIK 205          
BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2I4E7C6|A0A2I4E7C6_JUGRE (probable ribosome-binding factor A, chloroplastic OS=Juglans regia OX=51240 GN=LOC108986944 PE=3 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 1.053e-57
Identity = 115/208 (55.29%), Postives = 144/208 (69.23%), Query Frame = 0
Query:    2 STTQLFHTALP-------PSLTPCCRCNNNIR-VTATAQGLKHGWVLQSTINTNTKKAVVGSRMIKSSFGADTYLSSVTTITDVEITADLQVVKVYVSVFGDERGKQVAMAGLKSKAKYVRSELGKRMRLRLTPEIRFLEDESIERGSRVIAILDKIKNEKSG-TTQDVEQLDSSADKDDAEQLNSSENDDDPDWDYEEPDEEGIIYV 200
            S T  F +A P       P+     RC  N R V   A+ ++         +T  + A+    + ++S GAD YLSS+TTI+DVE++ DLQVVKVYVSVFGDERGK+VA+AGLKSKAKYVRSELG+RM+LRLTPEIRF+EDES+ERGSRVIAILDKIKNEK+   +QDVEQ DSS         N S+  DD +W+ ++PDE+ IIYV
Sbjct:   30 SPTAWFLSARPTGFISLRPTTGSTIRCMANPRRVKMVAKQIRRELSDMLLTDTVLQYAI----LPEASLGADRYLSSLTTISDVEVSGDLQVVKVYVSVFGDERGKEVAIAGLKSKAKYVRSELGRRMKLRLTPEIRFIEDESLERGSRVIAILDKIKNEKNNEESQDVEQSDSS---------NVSQ--DDREWEGDDPDED-IIYV 221          
BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A371DZH7|A0A371DZH7_MUCPR (Putative ribosome-binding factor A, chloroplastic OS=Mucuna pruriens OX=157652 GN=CR513_62763 PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 3.306e-57
Identity = 98/147 (66.67%), Postives = 116/147 (78.91%), Query Frame = 0
Query:   48 TKKAVVGSRMIKSSFGADTYLSSVTTITDVEITADLQVVKVYVSVFGDERGKQVAMAGLKSKAKYVRSELGKRMRLRLTPEIRFLEDESIERGSRVIAILDKIKNEKSGTTQDVEQLDSSADKDDAEQLNSSENDDDPDWDYEEPDE 194
            T K +  + + ++S GAD YLSS+TTITDV+++ DLQVVKVYVSVFGDERGK+VA AGLKSK KYVRSELGKRM+LRLTPEIRF+ED+S E+GSRVIAILDKIK+EKS   Q+ EQLDSSA            N+DD DWD E P+E
Sbjct:   67 TDKVLQYAILPEASLGADRYLSSLTTITDVQVSGDLQVVKVYVSVFGDERGKEVAFAGLKSKTKYVRSELGKRMKLRLTPEIRFIEDDSFEKGSRVIAILDKIKSEKSSGRQNKEQLDSSA------------NEDDDDWDGENPEE 201          
BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. UniProtKB/Swiss-Prot
Match: sp|O65693|RBFA_ARATH (Probable ribosome-binding factor A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g34730 PE=2 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 8.545e-57
Identity = 108/212 (50.94%), Postives = 135/212 (63.68%), Query Frame = 0
Query:    2 STTQLFHTALPPSLTPC-----------CRCNNNIR-VTATAQGLKHGWVLQSTINTNTKKAVVGSRMIKSSFGADTYLSSVTTITDVEITADLQVVKVYVSVFGDERGKQVAMAGLKSKAKYVRSELGKRMRLRLTPEIRFLEDESIERGSRVIAILDKIKNEKSGTTQDVEQLDSSADKDDAEQLNSSENDDDPDWDYEEPDEEGIIYVE 201
            S TQ FH   P S+ P             RC  N R V   A+ +          +T  + AV+     +++ GAD YLSS+TTI+DVE++ DLQVVKVYVSVFGD+RGK VA+AGLKSKAKYVRSELGKRM+LRLTPE+RF+EDE++ERGSRVIAILDKIK EK       E  DS+              +DD DW+ ++PDE+ IIYV+
Sbjct:   25 SKTQAFH--FPQSMAPVNLRTNLSVRRTVRCMANPRRVKMVAKQIMRELSDMLLTDTVLQHAVLP----EAALGADRYLSSLTTISDVEVSNDLQVVKVYVSVFGDDRGKDVAIAGLKSKAKYVRSELGKRMKLRLTPEVRFIEDEAMERGSRVIAILDKIKAEKGSGEGKTEPSDST--------------EDDQDWEVDDPDED-IIYVK 215          
BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q3M9Q8|RBFA_TRIV2 (Ribosome-binding factor A OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rbfA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.016e-28
Identity = 53/117 (45.30%), Postives = 80/117 (68.38%), Query Frame = 0
Query:   55 SRMIKSSFGADTYLSSVTTITDVEITADLQVVKVYVSVFGDERGKQVAMAGLKSKAKYVRSELGKRMRLRLTPEIRFLEDESIERGSRVIAILDKIKNEKSGTTQDVEQLDSSADKD 171
            S+M+ +    D   + + ++TDV+++ DLQ  K+YVS++G E  K   MAGLKS   +VRSELG R+RLR TPE+ F+ED SIERG++V+ +L+K++N +S    D+   D S D+D
Sbjct:   19 SQMLINGIKDDRVGTGMVSVTDVDVSGDLQHAKIYVSIYGTEEAKAETMAGLKSATGFVRSELGARVRLRRTPEVTFIEDRSIERGTKVLTLLNKLENARS--LDDIPSADDSLDED 133          
BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q8Z0M8|RBFA_NOSS1 (Ribosome-binding factor A OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rbfA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.073e-28
Identity = 53/117 (45.30%), Postives = 80/117 (68.38%), Query Frame = 0
Query:   55 SRMIKSSFGADTYLSSVTTITDVEITADLQVVKVYVSVFGDERGKQVAMAGLKSKAKYVRSELGKRMRLRLTPEIRFLEDESIERGSRVIAILDKIKNEKSGTTQDVEQLDSSADKD 171
            S+M+ +    D   + + ++TDV+++ DLQ  K+YVS++G E  K   MAGLKS   +VRSELG R+RLR TPE+ F+ED SIERG++V+ +L+K++N +S    D+   D S D+D
Sbjct:   19 SQMLINGIKDDRVGTGMVSVTDVDVSGDLQHAKIYVSIYGTEEAKAETMAGLKSATGFVRSELGARVRLRRTPEVTFIEDRSIERGTKVLTLLNKLENARS--PDDIPSADDSLDED 133          
BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. UniProtKB/Swiss-Prot
Match: sp|B0JRP8|RBFA_MICAN (Ribosome-binding factor A OS=Microcystis aeruginosa (strain NIES-843) OX=449447 GN=rbfA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.420e-26
Identity = 51/122 (41.80%), Postives = 81/122 (66.39%), Query Frame = 0
Query:   42 STINTNTKKAVVGSRMIKSSFGADTYLSSVTTITDVEITADLQVVKVYVSVFGDERGKQVAMAGLKSKAKYVRSELGKRMRLRLTPEIRFLEDESIERGSRVIAILDKIKNEKSGTTQDVEQ 163
            S +++  K+ V  S+M+      D   + + ++TDV+++ DLQ  K++VS++G+E  K   MAGLK+ A +VR ELG+R+RLR TPE+ FLED S+ERG R++ +LD IK ++     D E+
Sbjct:    8 SRVSSLIKREV--SQMLLMEIKDDRVGAGMVSVTDVDLSHDLQHAKIFVSIYGNEDAKAETMAGLKASAGFVRRELGQRIRLRRTPEVVFLEDSSLERGDRMLHLLDHIKTDRPPEDDDSEE 127          
BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q93LL7|RBFA_NOSP7 (Ribosome-binding factor A OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) OX=63737 GN=rbfA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.588e-26
Identity = 50/118 (42.37%), Postives = 82/118 (69.49%), Query Frame = 0
Query:   55 SRMIKSSFGADTYLSSVTTITDVEITADLQVVKVYVSVFGDERGKQVAMAGLKSKAKYVRSELGKRMRLRLTPEIRFLEDESIERGSRVIAILDKIKNEKSGTTQDVEQLDSSADKDD 172
            S+M+ +    D   + + ++TDV+++ DLQ  K+YVS++G +  K   MAGLKS   YVRSELG R+RLR TPE+ FLED SIERG++V+A+L ++ +++    +++  ++ + D+DD
Sbjct:   19 SQMLLNGIKDDRVGTGMVSVTDVDVSGDLQHAKIYVSIYGTDEAKVETMAGLKSATGYVRSELGARVRLRRTPEVIFLEDRSIERGNKVLALLSQLNHDRP--PENLLAVEDNTDEDD 134          
BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. UniProtKB/Swiss-Prot
Match: sp|B8HWS1|RBFA_CYAP4 (Ribosome-binding factor A OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=395961 GN=rbfA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.696e-26
Identity = 46/100 (46.00%), Postives = 72/100 (72.00%), Query Frame = 0
Query:   55 SRMIKSSFGADTYLSSVTTITDVEITADLQVVKVYVSVFGDERGKQVAMAGLKSKAKYVRSELGKRMRLRLTPEIRFLEDESIERGSRVIAILDKIKNEK 154
            S+M+ S    D   S + ++TDV+++ DLQ  K++VS++G E  +   MAGLK+   YVRSELG R+RLR TPE+ FLED S+ERG++V+++L+++  E+
Sbjct:   19 SQMLMSGIKDDRVGSGMVSVTDVDLSGDLQHAKIFVSIYGTEAARAETMAGLKAATGYVRSELGHRVRLRRTPEVVFLEDRSLERGTQVLSLLNRLSEER 118          
BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q8DIF9|RBFA_THEEB (Ribosome-binding factor A OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=rbfA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.304e-24
Identity = 42/87 (48.28%), Postives = 68/87 (78.16%), Query Frame = 0
Query:   69 SSVTTITDVEITADLQVVKVYVSVFGDERGKQVAMAGLKSKAKYVRSELGKRMRLRLTPEIRFLEDESIERGSRVIAILDKIKNEKS 155
            + + ++TDVE++ DLQ  K++VS++  E  ++  MAGLK+ + +VR ELG+R+RLR TPE+ F+ED S+ERGSRV+A+L++I  ++S
Sbjct:   33 AGMVSVTDVEVSGDLQHAKIFVSIYSTEEVRRSTMAGLKAASGFVRRELGQRIRLRRTPEVVFIEDRSLERGSRVLALLNQIGQQQS 119          
BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q55625|RBFA_SYNY3 (Ribosome-binding factor A OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rbfA PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.089e-24
Identity = 50/125 (40.00%), Postives = 81/125 (64.80%), Query Frame = 0
Query:   42 STINTNTKKAVVGSRMIKSSFGADTYLSSVTTITDVEITADLQVVKVYVSVFGDERGKQVAMAGLKSKAKYVRSELGKRMRLRLTPEIRFLEDESIERGSRVIAILDKIKNEKSGTTQDVEQLDS 166
            S +++  K+ V  S+M+      D   + + ++T+VE++ DLQ  K++VS++G    K   MAGL S A +VR ELG+RMRLR TPE+ FLED S+ERG +++ +L+ +   ++  T+D+E  DS
Sbjct:    8 SRVSSLIKREV--SQMLLHEIKDDRVGTGMVSVTEVEVSGDLQHAKIFVSIYGSPEAKASTMAGLHSAAPFVRRELGQRMRLRRTPEVSFLEDRSLERGDKILNLLNNLP--QAIATEDLEDDDS 128          
BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q110L1|RBFA_TRIEI (Ribosome-binding factor A OS=Trichodesmium erythraeum (strain IMS101) OX=203124 GN=rbfA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.836e-24
Identity = 43/102 (42.16%), Postives = 71/102 (69.61%), Query Frame = 0
Query:   71 VTTITDVEITADLQVVKVYVSVFGDERGKQVAMAGLKSKAKYVRSELGKRMRLRLTPEIRFLEDESIERGSRVIAILDKIKNEKSGTTQDVEQLDSSADKDD 172
            + ++TDV+++ DLQ  KV+VS++G +  +   MAGL+S   YVRSELGKR+R+R TPE+ F+ED S+ERG+ ++++L+K+  E+    Q++E +       D
Sbjct:   35 MVSVTDVDVSGDLQHAKVFVSIYGSDEVRSQTMAGLRSATGYVRSELGKRIRMRRTPEVIFVEDRSLERGTEILSLLNKLSQERQ--QQEIEDITHKESHQD 134          
BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. UniProtKB/Swiss-Prot
Match: sp|B7KDJ9|RBFA_GLOC7 (Ribosome-binding factor A OS=Gloeothece citriformis (strain PCC 7424) OX=65393 GN=rbfA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.035e-23
Identity = 46/113 (40.71%), Postives = 76/113 (67.26%), Query Frame = 0
Query:   42 STINTNTKKAVVGSRMIKSSFGADTYLSSVTTITDVEITADLQVVKVYVSVFGDERGKQVAMAGLKSKAKYVRSELGKRMRLRLTPEIRFLEDESIERGSRVIAILDKIKNEK 154
            S +++  K+ V  S+M+      D   + + +ITDV+++ DLQ  K++VS++G E+ K   M GLKS   +VR ELG+R+RLR TPE+ FLED S+ERG R + +L+++++ +
Sbjct:    8 SRVSSLIKREV--SQMLLHGIKDDRVGAGMVSITDVDVSGDLQHAKIFVSIYGTEQAKAETMEGLKSSVGFVRRELGQRIRLRRTPEVVFLEDTSLERGDRTLHLLNQLQDAR 118          
BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. Araport11
Match: AT4G34730.3 (| ribosome-binding factor A family protein | Chr4:16570019-16571274 REVERSE LENGTH=215 | 201606)

HSP 1 Score: 181.8 bits (460), Expect = 8.742e-58
Identity = 108/212 (50.94%), Postives = 135/212 (63.68%), Query Frame = 0
Query:    2 STTQLFHTALPPSLTPC-----------CRCNNNIR-VTATAQGLKHGWVLQSTINTNTKKAVVGSRMIKSSFGADTYLSSVTTITDVEITADLQVVKVYVSVFGDERGKQVAMAGLKSKAKYVRSELGKRMRLRLTPEIRFLEDESIERGSRVIAILDKIKNEKSGTTQDVEQLDSSADKDDAEQLNSSENDDDPDWDYEEPDEEGIIYVE 201
            S TQ FH   P S+ P             RC  N R V   A+ +          +T  + AV+     +++ GAD YLSS+TTI+DVE++ DLQVVKVYVSVFGD+RGK VA+AGLKSKAKYVRSELGKRM+LRLTPE+RF+EDE++ERGSRVIAILDKIK EK       E  DS+              +DD DW+ ++PDE+ IIYV+
Sbjct:   25 SKTQAFH--FPQSMAPVNLRTNLSVRRTVRCMANPRRVKMVAKQIMRELSDMLLTDTVLQHAVLP----EAALGADRYLSSLTTISDVEVSNDLQVVKVYVSVFGDDRGKDVAIAGLKSKAKYVRSELGKRMKLRLTPEVRFIEDEAMERGSRVIAILDKIKAEKGSGEGKTEPSDST--------------EDDQDWEVDDPDED-IIYVK 215          
BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. Araport11
Match: AT4G34730.2 (| ribosome-binding factor A family protein | Chr4:16570019-16571274 REVERSE LENGTH=215 | 201606)

HSP 1 Score: 181.8 bits (460), Expect = 8.742e-58
Identity = 108/212 (50.94%), Postives = 135/212 (63.68%), Query Frame = 0
Query:    2 STTQLFHTALPPSLTPC-----------CRCNNNIR-VTATAQGLKHGWVLQSTINTNTKKAVVGSRMIKSSFGADTYLSSVTTITDVEITADLQVVKVYVSVFGDERGKQVAMAGLKSKAKYVRSELGKRMRLRLTPEIRFLEDESIERGSRVIAILDKIKNEKSGTTQDVEQLDSSADKDDAEQLNSSENDDDPDWDYEEPDEEGIIYVE 201
            S TQ FH   P S+ P             RC  N R V   A+ +          +T  + AV+     +++ GAD YLSS+TTI+DVE++ DLQVVKVYVSVFGD+RGK VA+AGLKSKAKYVRSELGKRM+LRLTPE+RF+EDE++ERGSRVIAILDKIK EK       E  DS+              +DD DW+ ++PDE+ IIYV+
Sbjct:   25 SKTQAFH--FPQSMAPVNLRTNLSVRRTVRCMANPRRVKMVAKQIMRELSDMLLTDTVLQHAVLP----EAALGADRYLSSLTTISDVEVSNDLQVVKVYVSVFGDDRGKDVAIAGLKSKAKYVRSELGKRMKLRLTPEVRFIEDEAMERGSRVIAILDKIKAEKGSGEGKTEPSDST--------------EDDQDWEVDDPDED-IIYVK 215          
BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. Araport11
Match: AT4G34730.1 (| ribosome-binding factor A family protein | Chr4:16570019-16571274 REVERSE LENGTH=215 | 201606)

HSP 1 Score: 181.8 bits (460), Expect = 8.742e-58
Identity = 108/212 (50.94%), Postives = 135/212 (63.68%), Query Frame = 0
Query:    2 STTQLFHTALPPSLTPC-----------CRCNNNIR-VTATAQGLKHGWVLQSTINTNTKKAVVGSRMIKSSFGADTYLSSVTTITDVEITADLQVVKVYVSVFGDERGKQVAMAGLKSKAKYVRSELGKRMRLRLTPEIRFLEDESIERGSRVIAILDKIKNEKSGTTQDVEQLDSSADKDDAEQLNSSENDDDPDWDYEEPDEEGIIYVE 201
            S TQ FH   P S+ P             RC  N R V   A+ +          +T  + AV+     +++ GAD YLSS+TTI+DVE++ DLQVVKVYVSVFGD+RGK VA+AGLKSKAKYVRSELGKRM+LRLTPE+RF+EDE++ERGSRVIAILDKIK EK       E  DS+              +DD DW+ ++PDE+ IIYV+
Sbjct:   25 SKTQAFH--FPQSMAPVNLRTNLSVRRTVRCMANPRRVKMVAKQIMRELSDMLLTDTVLQHAVLP----EAALGADRYLSSLTTISDVEVSNDLQVVKVYVSVFGDDRGKDVAIAGLKSKAKYVRSELGKRMKLRLTPEVRFIEDEAMERGSRVIAILDKIKAEKGSGEGKTEPSDST--------------EDDQDWEVDDPDED-IIYVK 215          
The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|G7J7U0|G7J7U0_MEDTR1.041e-7159.74Putative ribosome-binding factor A, K domain-like,... [more]
tr|A0A2K3MSL2|A0A2K3MSL2_TRIPR1.644e-6857.53Putative ribosome-binding factor A chloroplastic-l... [more]
tr|A0A1S3E7M0|A0A1S3E7M0_CICAR6.648e-6858.51probable ribosome-binding factor A, chloroplastic ... [more]
tr|V7ATH5|V7ATH5_PHAVU3.986e-6151.33Uncharacterized protein OS=Phaseolus vulgaris OX=3... [more]
tr|A0A3Q0FBR6|A0A3Q0FBR6_VIGRR1.087e-5869.23probable ribosome-binding factor A, chloroplastic ... [more]
tr|A0A2P5FQ96|A0A2P5FQ96_TREOI2.163e-5853.73Uncharacterized protein (Fragment) OS=Trema orient... [more]
tr|A0A5N6QQP7|A0A5N6QQP7_9ROSI3.252e-5854.81Uncharacterized protein OS=Carpinus fangiana OX=17... [more]
tr|A0A5P1FQ07|A0A5P1FQ07_ASPOF8.783e-5855.84Uncharacterized protein OS=Asparagus officinalis O... [more]
tr|A0A2I4E7C6|A0A2I4E7C6_JUGRE1.053e-5755.29probable ribosome-binding factor A, chloroplastic ... [more]
tr|A0A371DZH7|A0A371DZH7_MUCPR3.306e-5766.67Putative ribosome-binding factor A, chloroplastic ... [more]
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BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
sp|O65693|RBFA_ARATH8.545e-5750.94Probable ribosome-binding factor A, chloroplastic ... [more]
sp|Q3M9Q8|RBFA_TRIV21.016e-2845.30Ribosome-binding factor A OS=Trichormus variabilis... [more]
sp|Q8Z0M8|RBFA_NOSS11.073e-2845.30Ribosome-binding factor A OS=Nostoc sp. (strain PC... [more]
sp|B0JRP8|RBFA_MICAN1.420e-2641.80Ribosome-binding factor A OS=Microcystis aeruginos... [more]
sp|Q93LL7|RBFA_NOSP71.588e-2642.37Ribosome-binding factor A OS=Nostoc punctiforme (s... [more]
sp|B8HWS1|RBFA_CYAP42.696e-2646.00Ribosome-binding factor A OS=Cyanothece sp. (strai... [more]
sp|Q8DIF9|RBFA_THEEB1.304e-2448.28Ribosome-binding factor A OS=Thermosynechococcus e... [more]
sp|Q55625|RBFA_SYNY32.089e-2440.00Ribosome-binding factor A OS=Synechocystis sp. (st... [more]
sp|Q110L1|RBFA_TRIEI7.836e-2442.16Ribosome-binding factor A OS=Trichodesmium erythra... [more]
sp|B7KDJ9|RBFA_GLOC71.035e-2340.71Ribosome-binding factor A OS=Gloeothece citriformi... [more]
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BLAST of Vfaba.Hedin2.R1.4g236480.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11)
Total hits: 3
Match NameE-valueIdentityDescription
AT4G34730.38.742e-5850.94| ribosome-binding factor A family protein | Chr4:... [more]
AT4G34730.28.742e-5850.94| ribosome-binding factor A family protein | Chr4:... [more]
AT4G34730.18.742e-5850.94| ribosome-binding factor A family protein | Chr4:... [more]
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InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015946K homology domain-like, alpha/betaGENE3D3.30.300.20coord: 39..156
e-value: 1.4E-28
score: 101.0
IPR000238Ribosome-binding factor APFAMPF02033RBFAcoord: 57..146
e-value: 1.3E-24
score: 86.6
IPR000238Ribosome-binding factor ATIGRFAMTIGR00082TIGR00082coord: 65..152
e-value: 3.8E-23
score: 80.2
IPR000238Ribosome-binding factor APANTHERPTHR33515RIBOSOME-BINDING FACTOR A, CHLOROPLASTIC-RELATEDcoord: 61..201
IPR000238Ribosome-binding factor AHAMAPMF_00003RbfAcoord: 45..147
score: 19.417515
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 156..175
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 156..201
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 176..201
IPR023799Ribosome-binding factor A domain superfamilySUPERFAMILY89919Ribosome-binding factor A, RbfAcoord: 61..150

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vfaba.Hedin2.R1.4g236480.1_vfh_v1 ID=Vfaba.Hedin2.R1.4g236480.1_vfh_v1; Name=Vfaba.Hedin2.R1.4g236480.1; organism=Vicia faba; type=mRNA; length=606bp
ATGAGCACGACGCAACTGTTTCACACGGCGCTGCCGCCGTCGCTCACACC
TTGTTGCCGATGCAACAACAACATCCGCGTAACCGCCACTGCACAGGGAC
TGAAGCATGGGTGGGTCCTCCAAAGCACAATCAACACGAACACGAAGAAA
GCGGTTGTTGGTTCAAGAATGATAAAGTCTTCCTTTGGTGCTGATACTTA
CCTCTCGTCTGTCACCACCATCACCGATGTTGAAATCACCGCCGATTTAC
AGGTAGTGAAGGTGTATGTATCGGTTTTTGGAGATGAAAGAGGGAAGCAA
GTAGCCATGGCTGGGTTGAAATCAAAAGCTAAATATGTTCGAAGTGAGTT
GGGAAAGCGTATGAGGTTGCGATTAACTCCTGAGATTCGCTTTCTCGAGG
ATGAATCTATTGAGAGAGGAAGCAGGGTCATTGCAATATTAGATAAAATT
AAGAACGAGAAGAGTGGAACAACTCAAGATGTGGAACAGTTGGATTCATC
TGCGGACAAAGATGATGCTGAGCAGTTGAATTCATCAGAAAATGATGATG
ATCCTGATTGGGACTATGAAGAGCCTGATGAAGAAGGTATCATTTATGTG
GAATAG
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protein sequence of Vfaba.Hedin2.R1.4g236480.1_vfh_v1

>Vfaba.Hedin2.R1.4g236480.1_vfh_v1 ID=Vfaba.Hedin2.R1.4g236480.1_vfh_v1; Name=Vfaba.Hedin2.R1.4g236480.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=201bp
MSTTQLFHTALPPSLTPCCRCNNNIRVTATAQGLKHGWVLQSTINTNTKK
AVVGSRMIKSSFGADTYLSSVTTITDVEITADLQVVKVYVSVFGDERGKQ
VAMAGLKSKAKYVRSELGKRMRLRLTPEIRFLEDESIERGSRVIAILDKI
KNEKSGTTQDVEQLDSSADKDDAEQLNSSENDDDPDWDYEEPDEEGIIYV
E
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mRNA from alignment at chr4:1600485985..1600487600+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vfaba.Hedin2.R1.4g236480.1_vfh_v1 ID=Vfaba.Hedin2.R1.4g236480.1_vfh_v1; Name=Vfaba.Hedin2.R1.4g236480.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr4:1600485985..1600487600+ (Vicia faba
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR015946KH_dom-like_a/b
IPR000238RbfA
IPR023799RbfA_dom_sf
Vocabulary: Biological Process
TermDefinition
GO:0006364rRNA processing