Vfaba.Hedin2.R1.4g241560.1

Transcript Overview
NameVfaba.Hedin2.R1.4g241560.1
Unique NameVfaba.Hedin2.R1.4g241560.1_vfh_v1
TypemRNA
OrganismVicia faba (Faba bean)
Sequence length723
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr4chromosomechr4:1634469809..1634470614 +Vicia faba inbred line Hedin/2 genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vfhzwsR369Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vfhzwsR397Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
asvfhL071Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvfhL233Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cavfhL052Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavfhL631Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvfhL0087Cajanus cajan Asha genome v1.0Cajanus cajan
ccvfhL0482Cajanus cajan Asha genome v1.0Cajanus cajan
crvfhL076Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvfhL397Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
crvfhL889Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvfhL576Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
psvfhL084Pisum sativum Cameor genome v1aPisum sativum
psvfhL299Pisum sativum Cameor genome v1aPisum sativum
psvfhL307Pisum sativum Cameor genome v1aPisum sativum
vfhvfhL030Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvfhL038Vicia faba cv. Tiffany genome v1.0Vicia faba
tifvfhL312Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuR478Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vfhvuR514Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caivfhL084Cicer arietinum ICC 4958 genome v2Cicer arietinum
caivfhL259Cicer arietinum ICC 4958 genome v2Cicer arietinum
anvfhL0247Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL0435Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
caivfhL837Cicer arietinum ICC 4958 genome v2Cicer arietinum
anvfhL0579Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL0849Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
vfhvrvR465Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvrvR522Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvssR455Vicia sativa cv. Studenica genome v1.0Vicia sativa
vfhvssR478Vicia sativa cv. Studenica genome v1.0Vicia sativa
vfhvuaR446Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vfhvuaR464Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvfhL051Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvfhL564Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvfhL164Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvfhL295Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvfhL043Cicer arietinum
carvfhL564Cicer arietinum
ccavfhL172Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavfhL695Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vfhvumR527Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvumR611Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvvaR470Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vfhvvaR524Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vasvfhL065Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvfhL536Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vfhvstR517Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vfhvstR590Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvfvfhL378Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvfhL548Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vfhvunR445Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vfhvunR476Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
rna-TanjilR_27175Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Psat01G0479700-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Va01G100350.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
rna-XM_004507577.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
rna-XM_022784141.1Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Psat04G0011400-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vigun03g441500.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
LR48_mrnaVigan01g324400Vigna angularis Jingnong 6 genome v1.1Vigna angularis
jg39129.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
evm.model.Chr03.1095.1.62113176Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vigun03g441500.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vigun06g154700.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vigst.01G381500.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Vigan.01G542600.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vigst.05G072900.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
jg48521.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
evm.model.Chr06.1614Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
rna-KK1_004598Cajanus cajan Asha genome v1.0Cajanus cajan
Cr_22173.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
XM_058867739.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
rna-XM_014662622.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
rna-TanjilR_31736Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
XM_058897584.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Ca_21803.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
PvulFLAVERTChr03.490Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Vigun06g154700.2Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Ca_03417Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vum_01G04120.1Vigna umbellata FF25 genome v1.0Vigna umbellata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vfaba.Tiffany.R1.4g185240.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vfaba.Hedin2.R1.1g446600.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.4g241560Vfaba.Hedin2.R1.4g241560_vfh_v1Vicia fabagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.4g241560.1_vfh_v1-exonVfaba.Hedin2.R1.4g241560.1_vfh_v1-exon-chr4_vfh_v1:1634469809..1634470502Vicia fabaexon
Vfaba.Hedin2.R1.4g241560.1_vfh_v1-exonVfaba.Hedin2.R1.4g241560.1_vfh_v1-exon-chr4_vfh_v1:1634470586..1634470614Vicia fabaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.4g241560.1_vfh_v1-cdsVfaba.Hedin2.R1.4g241560.1_vfh_v1-cds-chr4_vfh_v1:1634469809..1634470502Vicia fabaCDS
Vfaba.Hedin2.R1.4g241560.1_vfh_v1-cdsVfaba.Hedin2.R1.4g241560.1_vfh_v1-cds-chr4_vfh_v1:1634470586..1634470614Vicia fabaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.4g241560.1_vfh_v1Vfaba.Hedin2.R1.4g241560.1_vfh_v1Vicia fabapolypeptide
Vfaba.Hedin2.R1.4g241560.1_vfh_v1Vfaba.Hedin2.R1.4g241560.1_vfh_v1-proteinVicia fabapolypeptide


Homology
BLAST of Vfaba.Hedin2.R1.4g241560.1 vs. UniProtKB/TrEMBL
Match: tr|G7JKJ3|G7JKJ3_MEDTR (E3 ubiquitin-protein ligase UPL5-like protein OS=Medicago truncatula OX=3880 GN=11443139 PE=4 SV=2)

HSP 1 Score: 325.094 bits (832), Expect = 4.802e-102
Identity = 173/237 (73.00%), Postives = 198/237 (83.54%), Query Frame = 0
Query:    1 MTPIETP---IQPQQQQRSSTKRKLDDDDES-VLDDDLVYVRMRKAETTETTVKP-WSGGGCRAGGGDGNNNLLKNRGPVCFFIRMVSEGYSVVMNAFPENTVQSIHERIYEMKRIPVFEQRLIFKGKQLQWEQTLAECGIQKDVILELVGRMRSTEHPQAWQVVNDMVTIVYDLCVGGNVQDPVKTVKNLLTTYINLALEPKPKLDADSATKYFQIFMNCSAISILVTLYVSPFTG 232
            MTPIE+P    Q QQQ RSS+KRKLD+DDE+  LDDDLVYVRMRK ETT+TT+   W+GGG  + GGDG     K + P+ FFIRM+S+GY+VV++A+PE TV+SIHERI EMK IP+FEQRLIF GKQLQWEQTL ECGIQ D  L LVGRMRSTEHPQAWQVVNDMV+IVYDLC G N+ D VK++K+LLTTYINLAL PKPKLDADSAT YFQIFMN SAIS+LVTLYVSP+TG
Sbjct:    1 MTPIESPNLLQQQQQQNRSSSKRKLDEDDENNALDDDLVYVRMRKDETTKTTLHSSWTGGGGGSSGGDGGGAFSKKKSPIHFFIRMMSKGYNVVIHAYPEETVKSIHERIEEMKGIPLFEQRLIFNGKQLQWEQTLVECGIQNDANLHLVGRMRSTEHPQAWQVVNDMVSIVYDLCHGVNLPDAVKSIKSLLTTYINLALAPKPKLDADSATSYFQIFMNSSAISVLVTLYVSPYTG 237          
BLAST of Vfaba.Hedin2.R1.4g241560.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3NW67|A0A2K3NW67_TRIPR (E3 ubiquitin-protein ligase upl5-like protein OS=Trifolium pratense OX=57577 GN=L195_g003780 PE=4 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 4.028e-94
Identity = 162/236 (68.64%), Postives = 188/236 (79.66%), Query Frame = 0
Query:    1 MTPIETPIQPQQQQ---RSSTKRKLDDDDES-VLDDDLVYVRMRKAETTETTVKPWSGGGCRAGGGDGNNNLLKNRGPVCFFIRMVSEGYSVVMNAFPENTVQSIHERIYEMKRIPVFEQRLIFKGKQLQWEQTLAECGIQKDVILELVGRMRSTEHPQAWQVVNDMVTIVYDLCVGGNVQDPVKTVKNLLTTYINLALEPKPKLDADSATKYFQIFMNCSAISILVTLYVSPFTG 232
            MTPI+TPI  QQ Q   RSS+KRKLDDDDE+ +LDDDLVYVRMRK ETT+T V  WS GG   G G     LLK +  + FFIRM+ +G SVV++A+PE+TV+SI ER+ E+  IP+FEQRLIF GKQLQWEQT+A+CGIQKD  +E VGRMRSTEHPQAWQVVNDMVT+VYDLC    V +  KTVK+LLT YI+LAL PKPKLDADSAT YF IFMN SAIS+LVTLY+SPF G
Sbjct:    1 MTPIQTPILQQQLQQQYRSSSKRKLDDDDENNMLDDDLVYVRMRKQETTKTAVNSWSRGG--GGVGSNGGGLLKKKSEIQFFIRMMPKGNSVVIHAYPEDTVKSILERLVELNSIPIFEQRLIFGGKQLQWEQTVAQCGIQKDSHVEHVGRMRSTEHPQAWQVVNDMVTVVYDLCRQVEVDEAAKTVKSLLTNYISLALTPKPKLDADSATSYFGIFMNSSAISVLVTLYISPFKG 234          
BLAST of Vfaba.Hedin2.R1.4g241560.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6MK34|A0A2Z6MK34_TRISU (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_203460 PE=4 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 1.781e-92
Identity = 162/235 (68.94%), Postives = 190/235 (80.85%), Query Frame = 0
Query:    1 MTPIETPI--QPQQQQRSSTKRKLDDDDES-VLDDDLVYVRMRKAETTETTVKPWSGGGCRAGGGDGNNNLLKNRGPVCFFIRMVSEGYSVVMNAFPENTVQSIHERIYEMKRIPVFEQRLIFKGKQLQWEQTLAECGIQKDVILELVGRMRSTEHPQAWQVVNDMVTIVYDLCVGGNVQDPVKTVKNLLTTYINLALEPKPKLDADSATKYFQIFMNCSAISILVTLYVSPFTG 232
            MTPI TPI  Q QQQ RSS+KRKL+DDDE+ V DDDLVYVRMRK ETT+T V  WSGGG   GG    N+       + FFIRM+ +G SVV++A+ E+TV+SI ER+ E+  IP+FEQRLIF+G+QLQWEQT+A+CGIQKD  +E VGRMRSTEHPQAWQVVNDMV++VYDLC   NVQ+P KTVK+LLT+YI+LAL PKPKLDADSAT YF IFMN SAIS+LVTLYVSPF G
Sbjct:    1 MTPILTPILQQQQQQYRSSSKRKLNDDDENNVSDDDLVYVRMRKQETTKTAVNSWSGGGGCKGGLLKKNS------EIHFFIRMMPKGKSVVIHAYAEDTVKSILERLVELNSIPIFEQRLIFRGRQLQWEQTVAQCGIQKDCNVEHVGRMRSTEHPQAWQVVNDMVSVVYDLCRQVNVQEPSKTVKSLLTSYISLALTPKPKLDADSATGYFGIFMNSSAISVLVTLYVSPFKG 229          
BLAST of Vfaba.Hedin2.R1.4g241560.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2YNT5|A0A1S2YNT5_CICAR (E3 ubiquitin-protein ligase UPL5-like OS=Cicer arietinum OX=3827 GN=LOC101510740 PE=4 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 1.003e-81
Identity = 158/236 (66.95%), Postives = 181/236 (76.69%), Query Frame = 0
Query:    1 MTPIETP-IQPQQQQRSSTKRKLDDDDESVLDDD---LVYVRMRKAETTETTVKPWSGGGCRAGGGDGNNNLLKNRGPVCFFIRMVSEGYSVVMNAFPENTVQSIHERIYEMKRIPVFEQRLIFKGKQLQWEQTLAECGIQKDVILELVGRMRSTEHPQAWQVVNDMVTIVYDLCVGGNVQDPVKTVKNLLTTYINLALEPKPKLDADSATKYFQIFMNCSAISILVTLYVSPFTG 232
            MT IETP +  QQQ R S+KRK DDDDE+  ++    LV VRMRK ET   TV  WSGGG   GGG     LLK R P+ FFIRM+SEG ++VM+A+PE  V+SIHERI  MK IP+FEQRLI++GKQLQWEQTLAEC +Q D ILELVGRMRSTEHPQAWQVVNDMV++VY LC G NV  P K VK L+TTYINLAL PKPKLDADSA  YF+IF + SA S+LVTLYVSP+ G
Sbjct:    1 MTVIETPFLHHQQQNRHSSKRKFDDDDENNNNNVSDDLVSVRMRKDETK--TVNSWSGGG--GGGGGDGGGLLK-RSPIQFFIRMMSEGNNIVMHAYPEENVKSIHERIQYMKGIPLFEQRLIYRGKQLQWEQTLAECCLQNDAILELVGRMRSTEHPQAWQVVNDMVSLVYRLCCGENVHVPDKIVKGLITTYINLALTPKPKLDADSANGYFEIFTSSSAPSVLVTLYVSPYPG 231          
BLAST of Vfaba.Hedin2.R1.4g241560.1 vs. UniProtKB/TrEMBL
Match: tr|A0A7M3V784|A0A7M3V784_TRIRP (Ubiquitin E3 (Fragment) OS=Trifolium repens OX=3899 PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 7.066e-74
Identity = 116/165 (70.30%), Postives = 143/165 (86.67%), Query Frame = 0
Query:   68 LLKNRGPVCFFIRMVSEGYSVVMNAFPENTVQSIHERIYEMKRIPVFEQRLIFKGKQLQWEQTLAECGIQKDVILELVGRMRSTEHPQAWQVVNDMVTIVYDLCVGGNVQDPVKTVKNLLTTYINLALEPKPKLDADSATKYFQIFMNCSAISILVTLYVSPFTG 232
            LLK +  + FFIRM+ +G S+VM+A+PE+TV+SIHER+ E+  IP+FEQRLIF+GKQLQWEQT+A+CGIQ+DV LELVGR+RSTEHPQAWQVVNDMV +VYDLC    V++  KTVK+LLT+YI+LAL PKPKLDADSAT YF IF+N +AIS+LVTLYVSP+ G
Sbjct:   13 LLKKKSDIQFFIRMMPKGNSLVMHAYPEDTVKSIHERLVELHSIPIFEQRLIFRGKQLQWEQTIAQCGIQRDVSLELVGRIRSTEHPQAWQVVNDMVNVVYDLCRQQPVEEAPKTVKSLLTSYISLALTPKPKLDADSATSYFGIFINSAAISVLVTLYVSPYKG 177          
BLAST of Vfaba.Hedin2.R1.4g241560.1 vs. UniProtKB/TrEMBL
Match: tr|A0A3Q0FBX3|A0A3Q0FBX3_VIGRR (E3 ubiquitin-protein ligase UPL5 isoform X3 OS=Vigna radiata var. radiata OX=3916 GN=LOC106768688 PE=4 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 4.894e-71
Identity = 128/238 (53.78%), Postives = 164/238 (68.91%), Query Frame = 0
Query:    1 MTPIETPIQPQ------QQQRSSTKRKLDDDDESVLDDDLVYVRMRKAETTETTVKPWSGGGCRAGGGDGNNNLLKNRGPVCFFIRMVSEGYSVVMNAFPENTVQSIHERIYEMKRIPVFEQRLIFKGKQLQWEQTLAECGIQKDVILELVGRMRSTEHPQAWQVVNDMVTIVYDLCVGGNVQDPVKTVKNLLTTYINLALEPKPKLDADSATKYFQIFMNCSAISILVTLYVSPFTG 232
            M+ IETP             R S+KRKLD++D+    D LV VRMRK E   +     S G   A G   +  + K R  + FF+RM+S G ++VM AFPE++V+SIHERI  MK IPVFEQRLI++GKQLQWEQTLAEC IQ D  L+LVGRMRSTEHPQAWQ++NDMV++VY LC G  V D +KT+K L+T+Y+N+     P++D +SA+ YFQIFM+ SA  +LV LYVSP+ G
Sbjct:    1 MSMIETPAVHHLSGGATDHHRHSSKRKLDEEDDGDFSD-LVCVRMRKEEAVNSWSS--SSGASGAAGSGCSVAVQKPRSHIQFFVRMMSAGNTIVMQAFPEDSVKSIHERIQSMKGIPVFEQRLIYRGKQLQWEQTLAECSIQNDANLQLVGRMRSTEHPQAWQIINDMVSLVYRLCCGETVHDSLKTIKGLITSYLNMT----PRIDNESASGYFQIFMSSSAPDVLVMLYVSPYAG 231          
BLAST of Vfaba.Hedin2.R1.4g241560.1 vs. UniProtKB/TrEMBL
Match: tr|V7C752|V7C752_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_003G084200g PE=4 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 1.323e-70
Identity = 127/238 (53.36%), Postives = 162/238 (68.07%), Query Frame = 0
Query:    1 MTPIETPI------QPQQQQRSSTKRKLDDDDESVLDDDLVYVRMRKAETTETTVKPWSGGGCRAGGGDGNNNLLKNRGPVCFFIRMVSEGYSVVMNAFPENTVQSIHERIYEMKRIPVFEQRLIFKGKQLQWEQTLAECGIQKDVILELVGRMRSTEHPQAWQVVNDMVTIVYDLCVGGNVQDPVKTVKNLLTTYINLALEPKPKLDADSATKYFQIFMNCSAISILVTLYVSPFTG 232
            M+ IETP        P    R S+KRKLD++D+    D LV VRMRK E   +           A G   +  L K R  + FF+RM+S G ++VM AFPE++V+SIHERI  MK IPVFEQRLI++GKQLQWEQTLAEC IQ D  L+LVGRMRSTEHPQAWQ++NDMV++VY LC G  V D +KT+K L+T Y+++     P++D +SA+ YFQIFM+ SA  +LV LYVSP+ G
Sbjct:    1 MSMIETPAVHHLSGGPTDHHRHSSKRKLDEEDDGDFSD-LVCVRMRKEEAVNSWSG-----SSGAAGSGCSAALQKQRSHIQFFVRMMSAGNTIVMQAFPEDSVKSIHERIQSMKGIPVFEQRLIYRGKQLQWEQTLAECSIQNDANLQLVGRMRSTEHPQAWQIINDMVSLVYRLCCGEAVPDSLKTIKGLITNYLSMT----PRIDNESASGYFQIFMSSSAPDVLVMLYVSPYAG 228          
BLAST of Vfaba.Hedin2.R1.4g241560.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445G0E1|A0A445G0E1_GLYSO (E3 ubiquitin-protein ligase UPL5 isoform C OS=Glycine soja OX=3848 GN=D0Y65_044512 PE=4 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.013e-70
Identity = 128/237 (54.01%), Postives = 162/237 (68.35%), Query Frame = 0
Query:    1 MTPIETPIQPQQQ-----QRSSTKRKLDDDDESVLDDDLVYVRMRKAETTETTVKPWSGGGCRAGGGDGNNNLLKNRGPVCFFIRMVSEGYSVVMNAFPENTVQSIHERIYEMKRIPVFEQRLIFKGKQLQWEQTLAECGIQKDVILELVGRMRSTEHPQAWQVVNDMVTIVYDLCVGGNVQDPVKTVKNLLTTYINLALEPKPKLDADSATKYFQIFMNCSAISILVTLYVSPFTG 232
            M+ IETP    +       R  +KRK DD+D+    D LV VRMRK E     V  WS     AGG        + R  + FF+RM+  G ++VM AFPE++V+SIHERI  MK IP+FEQRLI++GKQLQWEQTLAEC IQ D  L+LVGRMRSTEHPQAWQV+NDMV++VY LC G  V D +KT+K L+T+Y+N+     P++D DSA+ YFQIFM+ SA ++LV LYVSP+ G
Sbjct:    1 MSVIETPAVHHRSGGSTDHRHPSKRKFDDEDDEDFSD-LVCVRMRKDEAK--AVNSWSASSSDAGGCSALQR--QQRSHIQFFVRMMCGGNTIVMQAFPEDSVKSIHERIQSMKGIPLFEQRLIYRGKQLQWEQTLAECSIQNDANLQLVGRMRSTEHPQAWQVINDMVSLVYRLCCGETVHDSLKTIKGLITSYLNMT----PRIDNDSASGYFQIFMSSSAPAVLVMLYVSPYAG 228          
BLAST of Vfaba.Hedin2.R1.4g241560.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9TSW3|A0A0L9TSW3_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan01g324400 PE=4 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 2.633e-70
Identity = 126/238 (52.94%), Postives = 160/238 (67.23%), Query Frame = 0
Query:    1 MTPIETPIQPQ------QQQRSSTKRKLDDDDESVLDDDLVYVRMRKAETTETTVKPWSGGGCRAGGGDGNNNLLKNRGPVCFFIRMVSEGYSVVMNAFPENTVQSIHERIYEMKRIPVFEQRLIFKGKQLQWEQTLAECGIQKDVILELVGRMRSTEHPQAWQVVNDMVTIVYDLCVGGNVQDPVKTVKNLLTTYINLALEPKPKLDADSATKYFQIFMNCSAISILVTLYVSPFTG 232
            M+ IETP             R S+KRKLD++D+    D LV VRMRK E   +        G    G        K R  + FF+RM+S G ++VM AFPE++V+SIHERI  MK IPVFEQRLI++GKQLQWEQTLAEC IQ D  L+LVGRMRSTEHPQAWQ++NDMV++VY LC G  V D +KT+K L+T+Y+N+     P++D +SA+ YFQIFM+ SA  +LV LYVSP+ G
Sbjct:    1 MSMIETPAVHHLSGGATDHHRHSSKRKLDEEDDGDFSD-LVCVRMRKEEAVNSWSSSSGASGTAGSGCSAVAQ--KPRSHIQFFVRMMSAGNTIVMQAFPEDSVKSIHERIQSMKGIPVFEQRLIYRGKQLQWEQTLAECSIQNDANLQLVGRMRSTEHPQAWQIINDMVSLVYRLCCGETVHDSLKTIKGLITSYLNMT----PRIDNESASGYFQIFMSSSAPDVLVMLYVSPYAG 231          
BLAST of Vfaba.Hedin2.R1.4g241560.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3RA07|A0A0S3RA07_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.01G542600 PE=4 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 3.010e-70
Identity = 126/238 (52.94%), Postives = 160/238 (67.23%), Query Frame = 0
Query:    1 MTPIETPIQPQ------QQQRSSTKRKLDDDDESVLDDDLVYVRMRKAETTETTVKPWSGGGCRAGGGDGNNNLLKNRGPVCFFIRMVSEGYSVVMNAFPENTVQSIHERIYEMKRIPVFEQRLIFKGKQLQWEQTLAECGIQKDVILELVGRMRSTEHPQAWQVVNDMVTIVYDLCVGGNVQDPVKTVKNLLTTYINLALEPKPKLDADSATKYFQIFMNCSAISILVTLYVSPFTG 232
            M+ IETP             R S+KRKLD++D+    D LV VRMRK E   +        G    G        K R  + FF+RM+S G ++VM AFPE++V+SIHERI  MK IPVFEQRLI++GKQLQWEQTLAEC IQ D  L+LVGRMRSTEHPQAWQ++NDMV++VY LC G  V D +KT+K L+T+Y+N+     P++D +SA+ YFQIFM+ SA  +LV LYVSP+ G
Sbjct:    1 MSMIETPAVHHLSGGATDHHRHSSKRKLDEEDDGDFSD-LVCVRMRKEEAVNSWSSSSGASGTAGSGCSAVAQ--KPRSHIQFFVRMMSAGNTIVMQAFPEDSVKSIHERIQSMKGIPVFEQRLIYRGKQLQWEQTLAECSIQNDANLQLVGRMRSTEHPQAWQIINDMVSLVYRLCCGETVHDSLKTIKGLITSYLNMT----PRIDNESASGYFQIFMSSSAPDVLVMLYVSPYAG 231          
BLAST of Vfaba.Hedin2.R1.4g241560.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9SU29|UPL5_ARATH (E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana OX=3702 GN=UPL5 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 4.781e-27
Identity = 59/151 (39.07%), Postives = 93/151 (61.59%), Query Frame = 0
Query:   78 FIRMVSEGYSVVMNAFPENTVQSIHERIYEMKRIPVFEQRLIFKGKQLQWEQTLAECGIQKDVILELVGRMRSTEHPQAWQVVNDMVTIVYDLCVGGNVQDPVKTVKNLLTTYINLALEPKPKLDADSATKYFQIFMNCSAISILVTLYVS 228
            F+RM+S G ++V++A   +TV+ +H+RI    +IP  EQR+I+KGKQLQ E +L    I++D  L+LV RM+STEHP AWQ ++D++  +  +  G N+Q  +   + ++T +  + +E       +S  KY  IF N S  + LV LY S
Sbjct:   98 FVRMMSGGKTIVIHAEKYDTVEKLHQRIEWKTKIPALEQRVIYKGKQLQRENSLTYYSIEQDASLQLVARMQSTEHPVAWQTIDDIMYTISRMYKGENLQSNIN--EKIVTFFAMIPVESD-----ESIAKYLNIFSNSSVPAALVMLYAS 241          
BLAST of Vfaba.Hedin2.R1.4g241560.1 vs. Araport11
Match: AT4G12570.1 (| ubiquitin protein ligase 5 | Chr4:7445585-7448819 FORWARD LENGTH=873 | 201606)

HSP 1 Score: 112.464 bits (280), Expect = 4.891e-28
Identity = 59/151 (39.07%), Postives = 93/151 (61.59%), Query Frame = 0
Query:   78 FIRMVSEGYSVVMNAFPENTVQSIHERIYEMKRIPVFEQRLIFKGKQLQWEQTLAECGIQKDVILELVGRMRSTEHPQAWQVVNDMVTIVYDLCVGGNVQDPVKTVKNLLTTYINLALEPKPKLDADSATKYFQIFMNCSAISILVTLYVS 228
            F+RM+S G ++V++A   +TV+ +H+RI    +IP  EQR+I+KGKQLQ E +L    I++D  L+LV RM+STEHP AWQ ++D++  +  +  G N+Q  +   + ++T +  + +E       +S  KY  IF N S  + LV LY S
Sbjct:   98 FVRMMSGGKTIVIHAEKYDTVEKLHQRIEWKTKIPALEQRVIYKGKQLQRENSLTYYSIEQDASLQLVARMQSTEHPVAWQTIDDIMYTISRMYKGENLQSNIN--EKIVTFFAMIPVESD-----ESIAKYLNIFSNSSVPAALVMLYAS 241          
BLAST of Vfaba.Hedin2.R1.4g241560.1 vs. Araport11
Match: AT1G53930.1 (| Ubiquitin-like superfamily protein | Chr1:20140411-20140887 REVERSE LENGTH=158 | 201606)

HSP 1 Score: 56.9954 bits (136), Expect = 5.058e-10
Identity = 31/77 (40.26%), Postives = 45/77 (58.44%), Query Frame = 0
Query:   72 RGPVCFFIRMVSEGYSVVMNAFPENTVQSIHERIYEMKRIPVFEQRLIFKGKQLQWEQTLAECGIQKDVILELVGRM 148
            R  V F       G  +V+     +T+++I  +I + + IPV +QRLIFKGKQL+   TLA+  IQ D IL L+ R+
Sbjct:   82 RHEVMFIFIKTLTGRRIVLEVENCDTIENIKAKIQDKQGIPVDQQRLIFKGKQLEDGLTLADYNIQNDSILHLIKRL 158          
The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.4g241560.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|G7JKJ3|G7JKJ3_MEDTR4.802e-10273.00E3 ubiquitin-protein ligase UPL5-like protein OS=M... [more]
tr|A0A2K3NW67|A0A2K3NW67_TRIPR4.028e-9468.64E3 ubiquitin-protein ligase upl5-like protein OS=T... [more]
tr|A0A2Z6MK34|A0A2Z6MK34_TRISU1.781e-9268.94Uncharacterized protein OS=Trifolium subterraneum ... [more]
tr|A0A1S2YNT5|A0A1S2YNT5_CICAR1.003e-8166.95E3 ubiquitin-protein ligase UPL5-like OS=Cicer ari... [more]
tr|A0A7M3V784|A0A7M3V784_TRIRP7.066e-7470.30Ubiquitin E3 (Fragment) OS=Trifolium repens OX=389... [more]
tr|A0A3Q0FBX3|A0A3Q0FBX3_VIGRR4.894e-7153.78E3 ubiquitin-protein ligase UPL5 isoform X3 OS=Vig... [more]
tr|V7C752|V7C752_PHAVU1.323e-7053.36Uncharacterized protein OS=Phaseolus vulgaris OX=3... [more]
tr|A0A445G0E1|A0A445G0E1_GLYSO2.013e-7054.01E3 ubiquitin-protein ligase UPL5 isoform C OS=Glyc... [more]
tr|A0A0L9TSW3|A0A0L9TSW3_PHAAN2.633e-7052.94Uncharacterized protein OS=Phaseolus angularis OX=... [more]
tr|A0A0S3RA07|A0A0S3RA07_PHAAN3.010e-7052.94Uncharacterized protein OS=Vigna angularis var. an... [more]
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BLAST of Vfaba.Hedin2.R1.4g241560.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
sp|Q9SU29|UPL5_ARATH4.781e-2739.07E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis th... [more]
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BLAST of Vfaba.Hedin2.R1.4g241560.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11)
Total hits: 2
Match NameE-valueIdentityDescription
AT4G12570.14.891e-2839.07| ubiquitin protein ligase 5 | Chr4:7445585-744881... [more]
AT1G53930.15.058e-1040.26| Ubiquitin-like superfamily protein | Chr1:201404... [more]
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InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019956Ubiquitin domainPRINTSPR00348UBIQUITINcoord: 128..149
score: 44.87
coord: 86..106
score: 11.83
coord: 107..127
score: 50.92
NoneNo IPR availableGENE3D3.10.20.90coord: 70..152
e-value: 3.5E-16
score: 60.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..16
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
NoneNo IPR availablePANTHERPTHR10666UBIQUITINcoord: 84..151
IPR000626Ubiquitin-like domainPFAMPF00240ubiquitincoord: 78..149
e-value: 1.2E-15
score: 57.0
IPR000626Ubiquitin-like domainPROSITEPS50053UBIQUITIN_2coord: 75..151
score: 16.886032
IPR029071Ubiquitin-like domain superfamilySUPERFAMILY54236Ubiquitin-likecoord: 77..162

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vfaba.Hedin2.R1.4g241560.1_vfh_v1 ID=Vfaba.Hedin2.R1.4g241560.1_vfh_v1; Name=Vfaba.Hedin2.R1.4g241560.1; organism=Vicia faba; type=mRNA; length=723bp
ATGACTCCGATCGAAACCCCTATTCAACCACAACAACAGCAACGTTCATC
GACGAAGCGGAAATTAGACGATGACGACGAAAGCGTGTTAGATGATGACT
TAGTGTATGTGAGAATGAGAAAAGCGGAGACCACAGAAACAACAGTTAAG
CCATGGAGCGGTGGAGGTTGCCGTGCTGGCGGTGGCGACGGAAACAACAA
TTTATTGAAGAATAGAGGACCTGTTTGTTTTTTCATTCGCATGGTTTCAG
AAGGTTATAGTGTTGTGATGAACGCTTTTCCGGAAAACACTGTGCAATCG
ATTCATGAACGGATATATGAAATGAAGAGAATTCCTGTTTTTGAGCAGAG
GTTGATTTTCAAAGGTAAACAGCTTCAGTGGGAACAAACTCTGGCGGAGT
GTGGGATACAGAAGGATGTGATTCTTGAACTAGTTGGTCGAATGCGGAGT
ACTGAACATCCTCAAGCGTGGCAAGTTGTGAATGATATGGTTACTATTGT
TTATGATCTTTGTGTTGGTGGGAATGTTCAGGATCCTGTTAAAACTGTGA
AGAATTTACTCACTACTTATATTAATTTGGCTTTGGAACCAAAACCTAAA
CTTGATGCTGATTCTGCTACTAAGTATTTCCAGATTTTCATGAATTGTTC
GGCTATTTCGATTCTGGTTACTCTCTATGTTTCGCCTTTTACAGGCTGCG
CGTGTGGCGTTGGAGTTTTGTAA
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protein sequence of Vfaba.Hedin2.R1.4g241560.1_vfh_v1

>Vfaba.Hedin2.R1.4g241560.1_vfh_v1 ID=Vfaba.Hedin2.R1.4g241560.1_vfh_v1; Name=Vfaba.Hedin2.R1.4g241560.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=240bp
MTPIETPIQPQQQQRSSTKRKLDDDDESVLDDDLVYVRMRKAETTETTVK
PWSGGGCRAGGGDGNNNLLKNRGPVCFFIRMVSEGYSVVMNAFPENTVQS
IHERIYEMKRIPVFEQRLIFKGKQLQWEQTLAECGIQKDVILELVGRMRS
TEHPQAWQVVNDMVTIVYDLCVGGNVQDPVKTVKNLLTTYINLALEPKPK
LDADSATKYFQIFMNCSAISILVTLYVSPFTGCACGVGVL
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mRNA from alignment at chr4:1634469809..1634470614+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vfaba.Hedin2.R1.4g241560.1_vfh_v1 ID=Vfaba.Hedin2.R1.4g241560.1_vfh_v1; Name=Vfaba.Hedin2.R1.4g241560.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr4:1634469809..1634470614+ (Vicia faba
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR019956Ubiquitin_dom
IPR000626Ubiquitin-like_dom
IPR029071Ubiquitin-like_domsf
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding