Vfaba.Hedin2.R1.4g241560.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Vfaba.Hedin2.R1.4g241560.1 vs. UniProtKB/TrEMBL
Match: tr|G7JKJ3|G7JKJ3_MEDTR (E3 ubiquitin-protein ligase UPL5-like protein OS=Medicago truncatula OX=3880 GN=11443139 PE=4 SV=2) HSP 1 Score: 325.094 bits (832), Expect = 4.802e-102 Identity = 173/237 (73.00%), Postives = 198/237 (83.54%), Query Frame = 0 Query: 1 MTPIETP---IQPQQQQRSSTKRKLDDDDES-VLDDDLVYVRMRKAETTETTVKP-WSGGGCRAGGGDGNNNLLKNRGPVCFFIRMVSEGYSVVMNAFPENTVQSIHERIYEMKRIPVFEQRLIFKGKQLQWEQTLAECGIQKDVILELVGRMRSTEHPQAWQVVNDMVTIVYDLCVGGNVQDPVKTVKNLLTTYINLALEPKPKLDADSATKYFQIFMNCSAISILVTLYVSPFTG 232 MTPIE+P Q QQQ RSS+KRKLD+DDE+ LDDDLVYVRMRK ETT+TT+ W+GGG + GGDG K + P+ FFIRM+S+GY+VV++A+PE TV+SIHERI EMK IP+FEQRLIF GKQLQWEQTL ECGIQ D L LVGRMRSTEHPQAWQVVNDMV+IVYDLC G N+ D VK++K+LLTTYINLAL PKPKLDADSAT YFQIFMN SAIS+LVTLYVSP+TG Sbjct: 1 MTPIESPNLLQQQQQQNRSSSKRKLDEDDENNALDDDLVYVRMRKDETTKTTLHSSWTGGGGGSSGGDGGGAFSKKKSPIHFFIRMMSKGYNVVIHAYPEETVKSIHERIEEMKGIPLFEQRLIFNGKQLQWEQTLVECGIQNDANLHLVGRMRSTEHPQAWQVVNDMVSIVYDLCHGVNLPDAVKSIKSLLTTYINLALAPKPKLDADSATSYFQIFMNSSAISVLVTLYVSPYTG 237
BLAST of Vfaba.Hedin2.R1.4g241560.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3NW67|A0A2K3NW67_TRIPR (E3 ubiquitin-protein ligase upl5-like protein OS=Trifolium pratense OX=57577 GN=L195_g003780 PE=4 SV=1) HSP 1 Score: 303.138 bits (775), Expect = 4.028e-94 Identity = 162/236 (68.64%), Postives = 188/236 (79.66%), Query Frame = 0 Query: 1 MTPIETPIQPQQQQ---RSSTKRKLDDDDES-VLDDDLVYVRMRKAETTETTVKPWSGGGCRAGGGDGNNNLLKNRGPVCFFIRMVSEGYSVVMNAFPENTVQSIHERIYEMKRIPVFEQRLIFKGKQLQWEQTLAECGIQKDVILELVGRMRSTEHPQAWQVVNDMVTIVYDLCVGGNVQDPVKTVKNLLTTYINLALEPKPKLDADSATKYFQIFMNCSAISILVTLYVSPFTG 232 MTPI+TPI QQ Q RSS+KRKLDDDDE+ +LDDDLVYVRMRK ETT+T V WS GG G G LLK + + FFIRM+ +G SVV++A+PE+TV+SI ER+ E+ IP+FEQRLIF GKQLQWEQT+A+CGIQKD +E VGRMRSTEHPQAWQVVNDMVT+VYDLC V + KTVK+LLT YI+LAL PKPKLDADSAT YF IFMN SAIS+LVTLY+SPF G Sbjct: 1 MTPIQTPILQQQLQQQYRSSSKRKLDDDDENNMLDDDLVYVRMRKQETTKTAVNSWSRGG--GGVGSNGGGLLKKKSEIQFFIRMMPKGNSVVIHAYPEDTVKSILERLVELNSIPIFEQRLIFGGKQLQWEQTVAQCGIQKDSHVEHVGRMRSTEHPQAWQVVNDMVTVVYDLCRQVEVDEAAKTVKSLLTNYISLALTPKPKLDADSATSYFGIFMNSSAISVLVTLYISPFKG 234
BLAST of Vfaba.Hedin2.R1.4g241560.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6MK34|A0A2Z6MK34_TRISU (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_203460 PE=4 SV=1) HSP 1 Score: 297.745 bits (761), Expect = 1.781e-92 Identity = 162/235 (68.94%), Postives = 190/235 (80.85%), Query Frame = 0 Query: 1 MTPIETPI--QPQQQQRSSTKRKLDDDDES-VLDDDLVYVRMRKAETTETTVKPWSGGGCRAGGGDGNNNLLKNRGPVCFFIRMVSEGYSVVMNAFPENTVQSIHERIYEMKRIPVFEQRLIFKGKQLQWEQTLAECGIQKDVILELVGRMRSTEHPQAWQVVNDMVTIVYDLCVGGNVQDPVKTVKNLLTTYINLALEPKPKLDADSATKYFQIFMNCSAISILVTLYVSPFTG 232 MTPI TPI Q QQQ RSS+KRKL+DDDE+ V DDDLVYVRMRK ETT+T V WSGGG GG N+ + FFIRM+ +G SVV++A+ E+TV+SI ER+ E+ IP+FEQRLIF+G+QLQWEQT+A+CGIQKD +E VGRMRSTEHPQAWQVVNDMV++VYDLC NVQ+P KTVK+LLT+YI+LAL PKPKLDADSAT YF IFMN SAIS+LVTLYVSPF G Sbjct: 1 MTPILTPILQQQQQQYRSSSKRKLNDDDENNVSDDDLVYVRMRKQETTKTAVNSWSGGGGCKGGLLKKNS------EIHFFIRMMPKGKSVVIHAYAEDTVKSILERLVELNSIPIFEQRLIFRGRQLQWEQTVAQCGIQKDCNVEHVGRMRSTEHPQAWQVVNDMVSVVYDLCRQVNVQEPSKTVKSLLTSYISLALTPKPKLDADSATGYFGIFMNSSAISVLVTLYVSPFKG 229
BLAST of Vfaba.Hedin2.R1.4g241560.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2YNT5|A0A1S2YNT5_CICAR (E3 ubiquitin-protein ligase UPL5-like OS=Cicer arietinum OX=3827 GN=LOC101510740 PE=4 SV=1) HSP 1 Score: 271.552 bits (693), Expect = 1.003e-81 Identity = 158/236 (66.95%), Postives = 181/236 (76.69%), Query Frame = 0 Query: 1 MTPIETP-IQPQQQQRSSTKRKLDDDDESVLDDD---LVYVRMRKAETTETTVKPWSGGGCRAGGGDGNNNLLKNRGPVCFFIRMVSEGYSVVMNAFPENTVQSIHERIYEMKRIPVFEQRLIFKGKQLQWEQTLAECGIQKDVILELVGRMRSTEHPQAWQVVNDMVTIVYDLCVGGNVQDPVKTVKNLLTTYINLALEPKPKLDADSATKYFQIFMNCSAISILVTLYVSPFTG 232 MT IETP + QQQ R S+KRK DDDDE+ ++ LV VRMRK ET TV WSGGG GGG LLK R P+ FFIRM+SEG ++VM+A+PE V+SIHERI MK IP+FEQRLI++GKQLQWEQTLAEC +Q D ILELVGRMRSTEHPQAWQVVNDMV++VY LC G NV P K VK L+TTYINLAL PKPKLDADSA YF+IF + SA S+LVTLYVSP+ G Sbjct: 1 MTVIETPFLHHQQQNRHSSKRKFDDDDENNNNNVSDDLVSVRMRKDETK--TVNSWSGGG--GGGGGDGGGLLK-RSPIQFFIRMMSEGNNIVMHAYPEENVKSIHERIQYMKGIPLFEQRLIYRGKQLQWEQTLAECCLQNDAILELVGRMRSTEHPQAWQVVNDMVSLVYRLCCGENVHVPDKIVKGLITTYINLALTPKPKLDADSANGYFEIFTSSSAPSVLVTLYVSPYPG 231
BLAST of Vfaba.Hedin2.R1.4g241560.1 vs. UniProtKB/TrEMBL
Match: tr|A0A7M3V784|A0A7M3V784_TRIRP (Ubiquitin E3 (Fragment) OS=Trifolium repens OX=3899 PE=2 SV=1) HSP 1 Score: 249.595 bits (636), Expect = 7.066e-74 Identity = 116/165 (70.30%), Postives = 143/165 (86.67%), Query Frame = 0 Query: 68 LLKNRGPVCFFIRMVSEGYSVVMNAFPENTVQSIHERIYEMKRIPVFEQRLIFKGKQLQWEQTLAECGIQKDVILELVGRMRSTEHPQAWQVVNDMVTIVYDLCVGGNVQDPVKTVKNLLTTYINLALEPKPKLDADSATKYFQIFMNCSAISILVTLYVSPFTG 232 LLK + + FFIRM+ +G S+VM+A+PE+TV+SIHER+ E+ IP+FEQRLIF+GKQLQWEQT+A+CGIQ+DV LELVGR+RSTEHPQAWQVVNDMV +VYDLC V++ KTVK+LLT+YI+LAL PKPKLDADSAT YF IF+N +AIS+LVTLYVSP+ G Sbjct: 13 LLKKKSDIQFFIRMMPKGNSLVMHAYPEDTVKSIHERLVELHSIPIFEQRLIFRGKQLQWEQTIAQCGIQRDVSLELVGRIRSTEHPQAWQVVNDMVNVVYDLCRQQPVEEAPKTVKSLLTSYISLALTPKPKLDADSATSYFGIFINSAAISVLVTLYVSPYKG 177
BLAST of Vfaba.Hedin2.R1.4g241560.1 vs. UniProtKB/TrEMBL
Match: tr|A0A3Q0FBX3|A0A3Q0FBX3_VIGRR (E3 ubiquitin-protein ligase UPL5 isoform X3 OS=Vigna radiata var. radiata OX=3916 GN=LOC106768688 PE=4 SV=1) HSP 1 Score: 240.736 bits (613), Expect = 4.894e-71 Identity = 128/238 (53.78%), Postives = 164/238 (68.91%), Query Frame = 0 Query: 1 MTPIETPIQPQ------QQQRSSTKRKLDDDDESVLDDDLVYVRMRKAETTETTVKPWSGGGCRAGGGDGNNNLLKNRGPVCFFIRMVSEGYSVVMNAFPENTVQSIHERIYEMKRIPVFEQRLIFKGKQLQWEQTLAECGIQKDVILELVGRMRSTEHPQAWQVVNDMVTIVYDLCVGGNVQDPVKTVKNLLTTYINLALEPKPKLDADSATKYFQIFMNCSAISILVTLYVSPFTG 232 M+ IETP R S+KRKLD++D+ D LV VRMRK E + S G A G + + K R + FF+RM+S G ++VM AFPE++V+SIHERI MK IPVFEQRLI++GKQLQWEQTLAEC IQ D L+LVGRMRSTEHPQAWQ++NDMV++VY LC G V D +KT+K L+T+Y+N+ P++D +SA+ YFQIFM+ SA +LV LYVSP+ G Sbjct: 1 MSMIETPAVHHLSGGATDHHRHSSKRKLDEEDDGDFSD-LVCVRMRKEEAVNSWSS--SSGASGAAGSGCSVAVQKPRSHIQFFVRMMSAGNTIVMQAFPEDSVKSIHERIQSMKGIPVFEQRLIYRGKQLQWEQTLAECSIQNDANLQLVGRMRSTEHPQAWQIINDMVSLVYRLCCGETVHDSLKTIKGLITSYLNMT----PRIDNESASGYFQIFMSSSAPDVLVMLYVSPYAG 231
BLAST of Vfaba.Hedin2.R1.4g241560.1 vs. UniProtKB/TrEMBL
Match: tr|V7C752|V7C752_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_003G084200g PE=4 SV=1) HSP 1 Score: 241.506 bits (615), Expect = 1.323e-70 Identity = 127/238 (53.36%), Postives = 162/238 (68.07%), Query Frame = 0 Query: 1 MTPIETPI------QPQQQQRSSTKRKLDDDDESVLDDDLVYVRMRKAETTETTVKPWSGGGCRAGGGDGNNNLLKNRGPVCFFIRMVSEGYSVVMNAFPENTVQSIHERIYEMKRIPVFEQRLIFKGKQLQWEQTLAECGIQKDVILELVGRMRSTEHPQAWQVVNDMVTIVYDLCVGGNVQDPVKTVKNLLTTYINLALEPKPKLDADSATKYFQIFMNCSAISILVTLYVSPFTG 232 M+ IETP P R S+KRKLD++D+ D LV VRMRK E + A G + L K R + FF+RM+S G ++VM AFPE++V+SIHERI MK IPVFEQRLI++GKQLQWEQTLAEC IQ D L+LVGRMRSTEHPQAWQ++NDMV++VY LC G V D +KT+K L+T Y+++ P++D +SA+ YFQIFM+ SA +LV LYVSP+ G Sbjct: 1 MSMIETPAVHHLSGGPTDHHRHSSKRKLDEEDDGDFSD-LVCVRMRKEEAVNSWSG-----SSGAAGSGCSAALQKQRSHIQFFVRMMSAGNTIVMQAFPEDSVKSIHERIQSMKGIPVFEQRLIYRGKQLQWEQTLAECSIQNDANLQLVGRMRSTEHPQAWQIINDMVSLVYRLCCGEAVPDSLKTIKGLITNYLSMT----PRIDNESASGYFQIFMSSSAPDVLVMLYVSPYAG 228
BLAST of Vfaba.Hedin2.R1.4g241560.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445G0E1|A0A445G0E1_GLYSO (E3 ubiquitin-protein ligase UPL5 isoform C OS=Glycine soja OX=3848 GN=D0Y65_044512 PE=4 SV=1) HSP 1 Score: 238.424 bits (607), Expect = 2.013e-70 Identity = 128/237 (54.01%), Postives = 162/237 (68.35%), Query Frame = 0 Query: 1 MTPIETPIQPQQQ-----QRSSTKRKLDDDDESVLDDDLVYVRMRKAETTETTVKPWSGGGCRAGGGDGNNNLLKNRGPVCFFIRMVSEGYSVVMNAFPENTVQSIHERIYEMKRIPVFEQRLIFKGKQLQWEQTLAECGIQKDVILELVGRMRSTEHPQAWQVVNDMVTIVYDLCVGGNVQDPVKTVKNLLTTYINLALEPKPKLDADSATKYFQIFMNCSAISILVTLYVSPFTG 232 M+ IETP + R +KRK DD+D+ D LV VRMRK E V WS AGG + R + FF+RM+ G ++VM AFPE++V+SIHERI MK IP+FEQRLI++GKQLQWEQTLAEC IQ D L+LVGRMRSTEHPQAWQV+NDMV++VY LC G V D +KT+K L+T+Y+N+ P++D DSA+ YFQIFM+ SA ++LV LYVSP+ G Sbjct: 1 MSVIETPAVHHRSGGSTDHRHPSKRKFDDEDDEDFSD-LVCVRMRKDEAK--AVNSWSASSSDAGGCSALQR--QQRSHIQFFVRMMCGGNTIVMQAFPEDSVKSIHERIQSMKGIPLFEQRLIYRGKQLQWEQTLAECSIQNDANLQLVGRMRSTEHPQAWQVINDMVSLVYRLCCGETVHDSLKTIKGLITSYLNMT----PRIDNDSASGYFQIFMSSSAPAVLVMLYVSPYAG 228
BLAST of Vfaba.Hedin2.R1.4g241560.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9TSW3|A0A0L9TSW3_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan01g324400 PE=4 SV=1) HSP 1 Score: 240.736 bits (613), Expect = 2.633e-70 Identity = 126/238 (52.94%), Postives = 160/238 (67.23%), Query Frame = 0 Query: 1 MTPIETPIQPQ------QQQRSSTKRKLDDDDESVLDDDLVYVRMRKAETTETTVKPWSGGGCRAGGGDGNNNLLKNRGPVCFFIRMVSEGYSVVMNAFPENTVQSIHERIYEMKRIPVFEQRLIFKGKQLQWEQTLAECGIQKDVILELVGRMRSTEHPQAWQVVNDMVTIVYDLCVGGNVQDPVKTVKNLLTTYINLALEPKPKLDADSATKYFQIFMNCSAISILVTLYVSPFTG 232 M+ IETP R S+KRKLD++D+ D LV VRMRK E + G G K R + FF+RM+S G ++VM AFPE++V+SIHERI MK IPVFEQRLI++GKQLQWEQTLAEC IQ D L+LVGRMRSTEHPQAWQ++NDMV++VY LC G V D +KT+K L+T+Y+N+ P++D +SA+ YFQIFM+ SA +LV LYVSP+ G Sbjct: 1 MSMIETPAVHHLSGGATDHHRHSSKRKLDEEDDGDFSD-LVCVRMRKEEAVNSWSSSSGASGTAGSGCSAVAQ--KPRSHIQFFVRMMSAGNTIVMQAFPEDSVKSIHERIQSMKGIPVFEQRLIYRGKQLQWEQTLAECSIQNDANLQLVGRMRSTEHPQAWQIINDMVSLVYRLCCGETVHDSLKTIKGLITSYLNMT----PRIDNESASGYFQIFMSSSAPDVLVMLYVSPYAG 231
BLAST of Vfaba.Hedin2.R1.4g241560.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3RA07|A0A0S3RA07_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.01G542600 PE=4 SV=1) HSP 1 Score: 240.736 bits (613), Expect = 3.010e-70 Identity = 126/238 (52.94%), Postives = 160/238 (67.23%), Query Frame = 0 Query: 1 MTPIETPIQPQ------QQQRSSTKRKLDDDDESVLDDDLVYVRMRKAETTETTVKPWSGGGCRAGGGDGNNNLLKNRGPVCFFIRMVSEGYSVVMNAFPENTVQSIHERIYEMKRIPVFEQRLIFKGKQLQWEQTLAECGIQKDVILELVGRMRSTEHPQAWQVVNDMVTIVYDLCVGGNVQDPVKTVKNLLTTYINLALEPKPKLDADSATKYFQIFMNCSAISILVTLYVSPFTG 232 M+ IETP R S+KRKLD++D+ D LV VRMRK E + G G K R + FF+RM+S G ++VM AFPE++V+SIHERI MK IPVFEQRLI++GKQLQWEQTLAEC IQ D L+LVGRMRSTEHPQAWQ++NDMV++VY LC G V D +KT+K L+T+Y+N+ P++D +SA+ YFQIFM+ SA +LV LYVSP+ G Sbjct: 1 MSMIETPAVHHLSGGATDHHRHSSKRKLDEEDDGDFSD-LVCVRMRKEEAVNSWSSSSGASGTAGSGCSAVAQ--KPRSHIQFFVRMMSAGNTIVMQAFPEDSVKSIHERIQSMKGIPVFEQRLIYRGKQLQWEQTLAECSIQNDANLQLVGRMRSTEHPQAWQIINDMVSLVYRLCCGETVHDSLKTIKGLITSYLNMT----PRIDNESASGYFQIFMSSSAPDVLVMLYVSPYAG 231
BLAST of Vfaba.Hedin2.R1.4g241560.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9SU29|UPL5_ARATH (E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana OX=3702 GN=UPL5 PE=1 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 4.781e-27 Identity = 59/151 (39.07%), Postives = 93/151 (61.59%), Query Frame = 0 Query: 78 FIRMVSEGYSVVMNAFPENTVQSIHERIYEMKRIPVFEQRLIFKGKQLQWEQTLAECGIQKDVILELVGRMRSTEHPQAWQVVNDMVTIVYDLCVGGNVQDPVKTVKNLLTTYINLALEPKPKLDADSATKYFQIFMNCSAISILVTLYVS 228 F+RM+S G ++V++A +TV+ +H+RI +IP EQR+I+KGKQLQ E +L I++D L+LV RM+STEHP AWQ ++D++ + + G N+Q + + ++T + + +E +S KY IF N S + LV LY S Sbjct: 98 FVRMMSGGKTIVIHAEKYDTVEKLHQRIEWKTKIPALEQRVIYKGKQLQRENSLTYYSIEQDASLQLVARMQSTEHPVAWQTIDDIMYTISRMYKGENLQSNIN--EKIVTFFAMIPVESD-----ESIAKYLNIFSNSSVPAALVMLYAS 241
BLAST of Vfaba.Hedin2.R1.4g241560.1 vs. Araport11
Match: AT4G12570.1 (| ubiquitin protein ligase 5 | Chr4:7445585-7448819 FORWARD LENGTH=873 | 201606) HSP 1 Score: 112.464 bits (280), Expect = 4.891e-28 Identity = 59/151 (39.07%), Postives = 93/151 (61.59%), Query Frame = 0 Query: 78 FIRMVSEGYSVVMNAFPENTVQSIHERIYEMKRIPVFEQRLIFKGKQLQWEQTLAECGIQKDVILELVGRMRSTEHPQAWQVVNDMVTIVYDLCVGGNVQDPVKTVKNLLTTYINLALEPKPKLDADSATKYFQIFMNCSAISILVTLYVS 228 F+RM+S G ++V++A +TV+ +H+RI +IP EQR+I+KGKQLQ E +L I++D L+LV RM+STEHP AWQ ++D++ + + G N+Q + + ++T + + +E +S KY IF N S + LV LY S Sbjct: 98 FVRMMSGGKTIVIHAEKYDTVEKLHQRIEWKTKIPALEQRVIYKGKQLQRENSLTYYSIEQDASLQLVARMQSTEHPVAWQTIDDIMYTISRMYKGENLQSNIN--EKIVTFFAMIPVESD-----ESIAKYLNIFSNSSVPAALVMLYAS 241
BLAST of Vfaba.Hedin2.R1.4g241560.1 vs. Araport11
Match: AT1G53930.1 (| Ubiquitin-like superfamily protein | Chr1:20140411-20140887 REVERSE LENGTH=158 | 201606) HSP 1 Score: 56.9954 bits (136), Expect = 5.058e-10 Identity = 31/77 (40.26%), Postives = 45/77 (58.44%), Query Frame = 0 Query: 72 RGPVCFFIRMVSEGYSVVMNAFPENTVQSIHERIYEMKRIPVFEQRLIFKGKQLQWEQTLAECGIQKDVILELVGRM 148 R V F G +V+ +T+++I +I + + IPV +QRLIFKGKQL+ TLA+ IQ D IL L+ R+ Sbjct: 82 RHEVMFIFIKTLTGRRIVLEVENCDTIENIKAKIQDKQGIPVDQQRLIFKGKQLEDGLTLADYNIQNDSILHLIKRL 158 The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.4g241560.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL) Total hits: 10
BLAST of Vfaba.Hedin2.R1.4g241560.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot) Total hits: 1
BLAST of Vfaba.Hedin2.R1.4g241560.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11) Total hits: 2
InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vfaba.Hedin2.R1.4g241560.1_vfh_v1 ID=Vfaba.Hedin2.R1.4g241560.1_vfh_v1; Name=Vfaba.Hedin2.R1.4g241560.1; organism=Vicia faba; type=mRNA; length=723bpback to top protein sequence of Vfaba.Hedin2.R1.4g241560.1_vfh_v1 >Vfaba.Hedin2.R1.4g241560.1_vfh_v1 ID=Vfaba.Hedin2.R1.4g241560.1_vfh_v1; Name=Vfaba.Hedin2.R1.4g241560.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=240bpback to top mRNA from alignment at chr4:1634469809..1634470614+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>Vfaba.Hedin2.R1.4g241560.1_vfh_v1 ID=Vfaba.Hedin2.R1.4g241560.1_vfh_v1; Name=Vfaba.Hedin2.R1.4g241560.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr4:1634469809..1634470614+ (Vicia fababack to top |