Vfaba.Hedin2.R1.5g036400.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Vfaba.Hedin2.R1.5g036400.1 vs. UniProtKB/TrEMBL
Match: tr|G7KZ17|G7KZ17_MEDTR (Pathogenic type III effector avirulence factor Avr AvrRpt-cleavage: cleavage site protein OS=Medicago truncatula OX=3880 GN=11435618 PE=4 SV=1) HSP 1 Score: 180.259 bits (456), Expect = 1.327e-55 Identity = 102/153 (66.67%), Postives = 109/153 (71.24%), Query Frame = 0 Query: 1 MEEHYYKRSHVPAFGSWDWNDDHNNFPYTKCFDSARQPASLCYSYS-ESEDRDLYVTEDFYDNHNVSPTRIL-VPRKRAK------------KLVNNTHIEQSLTP----LPTSKPIDDNDLYNISPHLRYAKVKKRRRLCFFSSCFLPACIG 135 MEE+YYKRSHVP FGSWDWND HNNFPYT CFDS QP SL YSYS ESEDRDLY T DFYDNH VS T +L VPRKRAK V+ IE P +PTS PI++ DLYNISPHL YAKVKKRR LCFFS+CFLPACI Sbjct: 1 MEEYYYKRSHVPKFGSWDWND-HNNFPYTNCFDSVTQPGSLRYSYSAESEDRDLYGTADFYDNHVVSSTMLLNVPRKRAKVTDKHEKEIKKKNWVSKMDIELKPNPQPNLIPTSLPIEE-DLYNISPHLPYAKVKKRRGLCFFSTCFLPACIA 151
BLAST of Vfaba.Hedin2.R1.5g036400.1 vs. UniProtKB/TrEMBL
Match: tr|V7B4A6|V7B4A6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_008G137200g PE=4 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 5.415e-47 Identity = 84/150 (56.00%), Postives = 100/150 (66.67%), Query Frame = 0 Query: 1 MEEHYYKRSHVPAFGSWDWNDDHNNFPYTKCFDSARQPASLCYSYSESEDRDLYVTEDFYDNHNVSPTRILVPRKRAKKL------------VNNTHIEQSLTP---LPTSKPIDDNDLYNISPHLRYAKVKKRRRLCFFSSCFLPACIG 135 MEE YYK+S VPAFGSWDWND N P+T+CF+SARQ L SYS SEDRDLYVT D Y+N+ V+P I+VPR+R K L +++ E +P PTSKP+D+ DLY ISP L YAK KK+R LCFFSSC LP CI Sbjct: 1 MEEGYYKKSQVPAFGSWDWND---NLPFTQCFESARQAGLLRCSYSGSEDRDLYVTGDLYENNVVTPAMIVVPRRRTKVLDQHEKETKLKNWISDVDSEPPSSPPLARPTSKPVDE-DLYKISPGLLYAKAKKKRGLCFFSSCLLPTCIA 146
BLAST of Vfaba.Hedin2.R1.5g036400.1 vs. UniProtKB/TrEMBL
Match: tr|K7LAL7|K7LAL7_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100805674 PE=4 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 6.865e-47 Identity = 87/153 (56.86%), Postives = 103/153 (67.32%), Query Frame = 0 Query: 1 MEEHYYKRSHVPAFGSWDWNDDHNNFPYTKCFDSARQPASL-CYSYSESEDRDLYVTEDFYDNHNVSPTRILVPRKRAKKLVNNTHIEQSL---------------TPLP--TSKPIDDNDLYNISPHLRYAKVKKRRRLCFFSSCFLPACIG 135 MEE YYK+S VPAFGSWDWND N P+T+CF+SARQ L C +YSESE+RDLYVT D Y+N+ V+P I+VPR+RA +V+ E L TPLP TSKP+D+ DLY ISP L YAK KK+R LCFFSSC LP CI Sbjct: 1 MEEWYYKKSQVPAFGSWDWND---NLPFTQCFESARQAGLLRCSNYSESEERDLYVTGDLYENNVVTPAMIVVPRRRAN-VVDQHEKETKLKNWISDDVDSESPSPTPLPRPTSKPVDE-DLYKISPGLVYAKAKKKRGLCFFSSCLLPTCIA 148
BLAST of Vfaba.Hedin2.R1.5g036400.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0B2PT34|A0A0B2PT34_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_022521 PE=4 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 6.865e-47 Identity = 87/153 (56.86%), Postives = 103/153 (67.32%), Query Frame = 0 Query: 1 MEEHYYKRSHVPAFGSWDWNDDHNNFPYTKCFDSARQPASL-CYSYSESEDRDLYVTEDFYDNHNVSPTRILVPRKRAKKLVNNTHIEQSL---------------TPLP--TSKPIDDNDLYNISPHLRYAKVKKRRRLCFFSSCFLPACIG 135 MEE YYK+S VPAFGSWDWND N P+T+CF+SARQ L C +YSESE+RDLYVT D Y+N+ V+P I+VPR+RA +V+ E L TPLP TSKP+D+ DLY ISP L YAK KK+R LCFFSSC LP CI Sbjct: 1 MEEWYYKKSQVPAFGSWDWND---NLPFTQCFESARQAGLLRCSNYSESEERDLYVTGDLYENNVVTPAMIVVPRRRAN-VVDQHEKETKLKNWISDDVDSESPSPTPLPRPTSKPVDE-DLYKISPGLVYAKAKKKRGLCFFSSCLLPTCIA 148
BLAST of Vfaba.Hedin2.R1.5g036400.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3SVY5|A0A0S3SVY5_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.09G032200 PE=4 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 1.372e-46 Identity = 84/150 (56.00%), Postives = 98/150 (65.33%), Query Frame = 0 Query: 1 MEEHYYKRSHVPAFGSWDWNDDHNNFPYTKCFDSARQPASLCYSYSESEDRDLYVTEDFYDNHNVSPTRILVPRKRAK------------KLVNNTHIEQSLT---PLPTSKPIDDNDLYNISPHLRYAKVKKRRRLCFFSSCFLPACIG 135 MEE+YYKR HVPAFGSWDWND N P+T+CF+SARQ L YSYSESEDRDLYVT D Y+N V+P I+VPR+R K V+N S T P P KP+D+ DLY ISP L YAK +K+R LCFF SC +P CI Sbjct: 1 MEEYYYKRHHVPAFGSWDWND---NLPFTQCFESARQAGLLRYSYSESEDRDLYVTGDLYENDVVTPAMIVVPRRREKVRYQHEKEAKKQNWVSNVKELSSPTNPIPRPKPKPVDE-DLYKISPELLYAKTRKKRGLCFFPSCLIPTCIA 146
BLAST of Vfaba.Hedin2.R1.5g036400.1 vs. UniProtKB/TrEMBL
Match: tr|V7ALX6|V7ALX6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_010G031300g PE=4 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 2.918e-46 Identity = 81/150 (54.00%), Postives = 98/150 (65.33%), Query Frame = 0 Query: 1 MEEHYYKRSHVPAFGSWDWNDDHNNFPYTKCFDSARQPASLCYSYSESEDRDLYVTEDFYDNHNVSPTRILVPRKRAKK-------------LVNNTHIEQSLTPL--PTSKPIDDNDLYNISPHLRYAKVKKRRRLCFFSSCFLPACIG 135 MEE+YYKR HVPAFGSWDWND N P+T+CF+SARQ L YSYSESEDRDLYVT D Y+N V+P I+VPR+R K + N + +P+ P KP+D+ DLY ISP L YAK +K+R LCFF SC +P CI Sbjct: 1 MEEYYYKRHHVPAFGSWDWND---NLPFTQCFESARQAGLLRYSYSESEDRDLYVTGDLYENDVVTPAMIVVPRRREKGRCQHEKEAKKQNWVSNVKELPSPTSPIARPKPKPVDE-DLYKISPELLYAKTRKKRGLCFFPSCLIPTCIA 146
BLAST of Vfaba.Hedin2.R1.5g036400.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3VCC9|A0A1S3VCC9_VIGRR (uncharacterized protein LOC106773592 OS=Vigna radiata var. radiata OX=3916 GN=LOC106773592 PE=4 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 5.625e-46 Identity = 82/150 (54.67%), Postives = 101/150 (67.33%), Query Frame = 0 Query: 1 MEEHYYKRSHVPAFGSWDWNDDHNNFPYTKCFDSARQPASLCYSYSESEDRDLYVTEDFYDNHNVSPTRILVPRKR----------AKKLVNNTHIEQSLTPL-----PTSKPIDDNDLYNISPHLRYAKVKKRRRLCFFSSCFLPACIG 135 MEE+YYKR HVPAFGSWDWND N P+T+CF+SARQ L YSYSESEDRDLYVT D Y+N V+P I+VPR+R AKK +++++ +P P KP+D+ DLY ISP L YAK +K+R LCFF SC +P CI Sbjct: 1 MEEYYYKRHHVPAFGSWDWND---NLPFTQCFESARQAGLLRYSYSESEDRDLYVTGDLYENDVVTPAMIVVPRRREKVRCQHEKEAKKQNWVSNVKELSSPTNPISRPKPKPVDE-DLYKISPELLYAKTRKKRGLCFFPSCLIPTCIA 146
BLAST of Vfaba.Hedin2.R1.5g036400.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0B2PNH2|A0A0B2PNH2_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=glysoja_038490 PE=4 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 1.425e-45 Identity = 83/150 (55.33%), Postives = 97/150 (64.67%), Query Frame = 0 Query: 1 MEEHYYKRSHVPAFGSWDWNDDHNNFPYTKCFDSARQPASLCYSYSESEDRDLYVTEDFYDNHNVSPTRILVPRKRAKKLVNNTHIEQSLT--------PLPTS-------KPIDDNDLYNISPHLRYAKVKKRRRLCFFSSCFLPACIG 135 MEE+YY+R HVPAFGSWDWND N P+T+CF+SARQ L YSYSESEDRDLYVT D Y+N V P I+VPR+R K N E+ P PTS KP+D+ DLY ISP L YAK +K+R LCFF SC +P CI Sbjct: 1 MEEYYYQRHHVPAFGSWDWND---NLPFTQCFESARQAGLLRYSYSESEDRDLYVTGDLYENDFVKPAMIVVPRRREKVRCQNEKDEKKQNWVSNVKELPSPTSPIQRPKPKPVDE-DLYKISPELLYAKNRKKRGLCFFPSCLMPTCIA 146
BLAST of Vfaba.Hedin2.R1.5g036400.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3TUF5|A0A1S3TUF5_VIGRR (uncharacterized protein LOC106758894 OS=Vigna radiata var. radiata OX=3916 GN=LOC106758894 PE=4 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 2.152e-45 Identity = 83/151 (54.97%), Postives = 98/151 (64.90%), Query Frame = 0 Query: 1 MEEHYYKR-SHVPAFGSWDWNDDHNNFPYTKCFDSARQPASLCYSYSESEDRDLYVTEDFYDNHNVSPTRILVPRKRAKKL----------------VNNTHIEQSLTPLPTSKPIDDNDLYNISPHLRYAKVKKRRRLCFFSSCFLPACI 134 MEE YYK+ S VPAFGSWDWND N P+T+CF++ARQ L SYSESEDRDLYVT D Y+N+ V+P I+VPR+R K V+N+ PTSKP+D+ DLY ISP L YAK KK+R LCFFSSC LP CI Sbjct: 1 MEEGYYKKKSQVPAFGSWDWND---NLPFTQCFETARQAGLLRCSYSESEDRDLYVTGDLYENNVVTPAMIVVPRRRKKVFDQQERETKLKNWISDDVDNSPPSSPPLRRPTSKPVDE-DLYKISPGLLYAKAKKKRGLCFFSSCLLPTCI 147
BLAST of Vfaba.Hedin2.R1.5g036400.1 vs. UniProtKB/TrEMBL
Match: tr|C6SYN7|C6SYN7_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 PE=2 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 2.717e-45 Identity = 80/150 (53.33%), Postives = 100/150 (66.67%), Query Frame = 0 Query: 1 MEEHYYKRSHVPAFGSWDWNDDHNNFPYTKCFDSARQPASLCYSYSESEDRDLYVTEDFYDNHNVSPTRILVPRKR----------AKKLVNNTHIEQSLTPL-----PTSKPIDDNDLYNISPHLRYAKVKKRRRLCFFSSCFLPACIG 135 ME +YYKR HVPAFGSWDWND N P+T+CF++ARQ L YSYSESEDRDLYVT D Y+N V+P I+VPR+R AKK +++++ +P P KP+D+ DLY ISP L YAK +K+R LCFF SC +P CI Sbjct: 1 MEAYYYKRHHVPAFGSWDWND---NLPFTQCFETARQAGLLRYSYSESEDRDLYVTGDLYENDVVTPAMIVVPRRREKVRCQNEKEAKKQSWRSNVKELPSPTSPIQRPKPKPVDE-DLYKISPELLYAKTRKKRGLCFFPSCLIPTCIA 146
BLAST of Vfaba.Hedin2.R1.5g036400.1 vs. Araport11
Match: AT5G48500.1 (| pathogenic type III effector avirulence factor Avr AvrRpt-cleavage: cleavage site protein | Chr5:19653235-19654017 FORWARD LENGTH=167 | 201606) HSP 1 Score: 95.1301 bits (235), Expect = 1.543e-25 Identity = 66/159 (41.51%), Postives = 85/159 (53.46%), Query Frame = 0 Query: 5 YYKRSHVPAFGSWDWNDDHNNFPYTKCFDSA--RQPASLCYSYSESEDRDLYVTEDFYDNHN-VSPTRILVPRKRAK-------------KLVNNTHIEQSLTPLPTS-------------KPIDDNDLYNISPHLRYAKVKKRRRLCF---FSSCFLP 131 Y +R HVPAFGSWDWND P+T+CF++A +QPA L Y+ S +DRDLY+ D YDNH+ V+P I+VPR+RAK K +N E P S KP+D+ DLY +SP L K K++R S CFLP Sbjct: 10 YCRRGHVPAFGSWDWND---AVPFTQCFETATTQQPAFLHYA-SYPQDRDLYLAGDLYDNHHLVAPAVIIVPRRRAKVGQEPAEKKRNVSKQQHNYKTEAREFNAPVSCPTPVVKRRMKAPKPVDE-DLYKVSPQLLSVKSKRKRGGGGFGCISRCFLP 163 The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.5g036400.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL) Total hits: 10
BLAST of Vfaba.Hedin2.R1.5g036400.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot) Total hits: 0
BLAST of Vfaba.Hedin2.R1.5g036400.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11) Total hits: 1
InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vfaba.Hedin2.R1.5g036400.1_vfh_v1 ID=Vfaba.Hedin2.R1.5g036400.1_vfh_v1; Name=Vfaba.Hedin2.R1.5g036400.1; organism=Vicia faba; type=mRNA; length=408bpback to top protein sequence of Vfaba.Hedin2.R1.5g036400.1_vfh_v1 >Vfaba.Hedin2.R1.5g036400.1_vfh_v1 ID=Vfaba.Hedin2.R1.5g036400.1_vfh_v1; Name=Vfaba.Hedin2.R1.5g036400.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=135bpback to top mRNA from alignment at chr5:233414455..233415429- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>Vfaba.Hedin2.R1.5g036400.1_vfh_v1 ID=Vfaba.Hedin2.R1.5g036400.1_vfh_v1; Name=Vfaba.Hedin2.R1.5g036400.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr5:233414455..233415429- (Vicia fababack to top |