Vfaba.Hedin2.R1.5g153480.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Vfaba.Hedin2.R1.5g153480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A072U4E7|A0A072U4E7_MEDTR (Transmembrane protein, putative OS=Medicago truncatula OX=3880 GN=25499476 PE=4 SV=1) HSP 1 Score: 255.758 bits (652), Expect = 1.888e-81 Identity = 156/300 (52.00%), Postives = 199/300 (66.33%), Query Frame = 0 Query: 1 MADSSNHGNAPPKDQSSSSEQQSSSNTDTSPPPVAAPHMMYYQPGPGGYPPGPHGPPPLHYHPYPPPPHGYPPYPPQPQGY--YPGQAPYYP-PQNYHSD----------------------------AAVS-----------ALSVNNFNTTSVLIGDWSISLVAQNPNAKVRGYFSDFKVDILHATNEIAMSFVPDFQLEKLEQKQMEIKASTNNGGNVVSFQRWDLDKMNDEKKHG--SIMFALRVSSTIEFKTTSTSSGSLLLMNICDSLKIVFQNNTGTGTLDTGGNPVDCRLFM 256 M++SSNHG APPK +SS+S+ QSS+NTDTSPP VAAP+MMYY PG G YP PPP P P YPP QGY +PG APYY P+ YH AA+S +LSV+NFNT+S+L GDW+IS+ A+NPN +++GYF DFKVD++H NE+AMS VPDF+LEK EQKQM++KAS+N NVVSFQ+WDLDKM++E++ SIMF +RVSS EFK+TS ++ S ++ IC+ LK+VFQNNTGTG+LD GGNP C+L+M Sbjct: 1 MSESSNHGKAPPK-ESSTSDHQSSTNTDTSPP-VAAPNMMYYPPGTG-YPCHGPQPPPY-----HPYPPPPHGYPPYQQGYNNFPGHAPYYDVPRTYHHTGDGGSSFFRGFIMCSCFIFTGFFVLTLIAALSLHPQFPVFKVVSLSVSNFNTSSILTGDWNISVTAENPNTRLKGYFLDFKVDVVHDNNELAMSLVPDFELEKHEQKQMDVKASSN---NVVSFQKWDLDKMSNERQSSSNSIMFGVRVSSLAEFKSTSFATRSTRMLAICEGLKVVFQNNTGTGSLDNGGNPATCQLYM 289
BLAST of Vfaba.Hedin2.R1.5g153480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2XUP1|A0A1S2XUP1_CICAR (NDR1/HIN1-like protein 6 OS=Cicer arietinum OX=3827 GN=LOC101501676 PE=4 SV=1) HSP 1 Score: 210.69 bits (535), Expect = 8.649e-64 Identity = 150/301 (49.83%), Postives = 195/301 (64.78%), Query Frame = 0 Query: 1 MADSSNHGNAPPKDQSSSSEQQSSSNTDTSPPPVAAP----HMMYYQPGPGGYPPGPHGPPPLHYHPYPPPPHGYPPYPPQPQGY--YPGQAPYY-PPQNYHSDAA--------------------------------------VSALSVNNFNTTSVLIGDWSISLVAQNPNAKVRGYFSDFKVDILHATNEIAMSFVPDFQLEKLEQKQMEIKASTNNGGNVVSFQRWDLDKMNDEKKHGSIMFALRVSSTIEFKTTSTSSGSLLLMNICDSLKIVFQNNTGTGTLDTGGNPVDCRLFM 256 M DSSNHG +PPK +SS+S+ Q SSN D+SPPP P HMMYY PG G YP PPP H +P PP + P PQGY YPG APYY P NY++ V++LSV NFNTT +L GDW+IS+ QNPN ++RGYFSDFKVD++H +E+A+S+VPDF+LEK EQKQM++K S++NG VSFQ+WDLDK+ +E++ GS+MF +RVSS FK+TS S+ + +++ +C+ LK+VFQ NTGTGTLDTGGNPV C+L+M Sbjct: 1 MMDSSNHGKSPPK-ESSTSDHQPSSNNDSSPPPQPPPVAAPHMMYYPPGTG-YPSHGPQPPPYHPYPPPPHGY-----APYPQGYNNYPGPAPYYNVPPNYNAANGGRGFFRGFIMCSCLIFTCFFLSSIIMALILHPQLPVYKVTSLSVTNFNTTPILTGDWNISITVQNPNDRLRGYFSDFKVDVVHENDELALSYVPDFELEKHEQKQMDVKTSSSNGAYGVSFQKWDLDKIANERQTGSVMFGVRVSSMTAFKSTSLSTRNAVILAVCEGLKVVFQTNTGTGTLDTGGNPVICQLYM 294
BLAST of Vfaba.Hedin2.R1.5g153480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6LNE6|A0A2Z6LNE6_TRISU (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_340400 PE=4 SV=1) HSP 1 Score: 189.889 bits (481), Expect = 1.285e-55 Identity = 125/269 (46.47%), Postives = 162/269 (60.22%), Query Frame = 0 Query: 30 SPPPVAAPHMMYYQPGPGGYPPGPHGPPPLHYHPYPPPPHGYPPYPPQPQGYYPGQ--APYY---PPQNYHSDA-------------------------------------AVSALSVNNFNTTSVLIGDWSISLVAQNPNAKVRGYFSDFKVDILHATNEIAMSFVPDFQLEKLEQKQMEIKASTNNGGNVVSFQRWDLDKMNDEKKHGSIMFALRVSSTIEFKTTSTSSGSLLLMNICDSLKIVFQNNTGTGTLDTGGNPVDCRLFM 256 SPPPVAAPH MYYQ P P P Y YPPPPHGYPPYPPQ YPGQ APYY P ++H D +V++LSV NFNT +L GDW+IS+ NPN +++GYF +FKVDI+H +NEIA S VP+F+LEK EQKQM+++AS+NNG VSFQ+WDLDKM+ E+ GS+M +R++S EFK+ S ++ S ++ C LK+VFQ TG G LD G P++C ++M Sbjct: 32 SPPPVAAPHTMYYQSSP-------GYPGPPPYPGYPPPPHGYPPYPPQGYNNYPGQIHAPYYSANPNYHHHGDGGAGFIRGFIMCSCFIFTGFFVSTLIIALMLHPQLPIYSVNSLSVANFNTNPMLTGDWNISISVHNPNDRLKGYFQEFKVDIVHESNEIAASAVPNFELEKEEQKQMDVRASSNNGAIAVSFQKWDLDKMSKERSSGSLMVGVRIASMTEFKSPSLTTRSTGMLASCQGLKVVFQGATGNGMLDNKGIPINCTIYM 293
BLAST of Vfaba.Hedin2.R1.5g153480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A392PYX7|A0A392PYX7_9FABA (Uncharacterized protein (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1) HSP 1 Score: 185.267 bits (469), Expect = 2.483e-55 Identity = 85/157 (54.14%), Postives = 117/157 (74.52%), Query Frame = 0 Query: 100 VSALSVNNFNTTSVLIGDWSISLVAQNPNAKVRGYFSDFKVDILHATNEIAMSFVPDFQLEKLEQKQMEIKASTNNGGNVVSFQRWDLDKMNDEKKHGSIMFALRVSSTIEFKTTSTSSGSLLLMNICDSLKIVFQNNTGTGTLDTGGNPVDCRLFM 256 V++LSV NFNT L GDW+IS+ QNPN +++GYF +FKVDI+H TNEIAMS VP+F+LEK EQKQME++ S+NNG VSFQ+WDLDK++ E+ GS+M +R++S EF++ S ++ S ++ C LK+VFQ TG G LD G PV+C ++M Sbjct: 21 VNSLSVTNFNTNPTLTGDWNISITVQNPNDRLKGYFREFKVDIVHDTNEIAMSAVPNFELEKQEQKQMEVRTSSNNGAIGVSFQKWDLDKISKERLSGSVMVGVRIASMTEFRSPSLTTRSTGILASCQGLKVVFQGPTGNGMLDNKGIPVNCTIYM 177
BLAST of Vfaba.Hedin2.R1.5g153480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3N883|A0A2K3N883_TRIPR (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g022529 PE=4 SV=1) HSP 1 Score: 186.037 bits (471), Expect = 4.309e-54 Identity = 97/218 (44.50%), Postives = 131/218 (60.09%), Query Frame = 0 Query: 79 QGY--YPGQ--APYYPPQNYHSDAA------------------------------------VSALSVNNFNTTSVLIGDWSISLVAQNPNAKVRGYFSDFKVDILHATNEIAMSFVPDFQLEKLEQKQMEIKASTNNGGNVVSFQRWDLDKMNDEKKHGSIMFALRVSSTIEFKTTSTSSGSLLLMNICDSLKIVFQNNTGTGTLDTGGNPVDCRLFM 256 QGY YPGQ APYY YH A V++LSV NFNT L GDW+IS+ QNPN +++GYF +FKVDI+H TNEIAMS VP+F+LEK EQKQMEI+ S+ NG VSFQ+WDLD+++ E+ GS+M +R++S EF++ S ++ S ++ C LK+VFQ +TG G LD G PV+C +++ Sbjct: 73 QGYNNYPGQIHAPYYNATPYHDGGAAFIRGFIMCSCFIFTGFFVSTLIIALMLHPQLPEYRVNSLSVTNFNTNPTLTGDWNISITVQNPNDRLKGYFREFKVDIVHDTNEIAMSVVPNFELEKQEQKQMEIRTSSTNGAIAVSFQKWDLDEISKERSSGSVMVGVRIASMTEFRSPSLTTRSTGMLASCLGLKVVFQGSTGNGMLDNKGIPVNCTIYV 290
BLAST of Vfaba.Hedin2.R1.5g153480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3TPH3|A0A1S3TPH3_VIGRR (uncharacterized protein LOC106757498 OS=Vigna radiata var. radiata OX=3916 GN=LOC106757498 PE=4 SV=2) HSP 1 Score: 173.711 bits (439), Expect = 2.481e-49 Identity = 102/268 (38.06%), Postives = 145/268 (54.10%), Query Frame = 0 Query: 30 SPPPVAAPHMMYYQPGPGGYPPGPHGPPPLHYHP--YPPPPHGYPPYPPQPQGYYPGQAPYY--PPQNYHSDA-------------------------------------AVSALSVNNFNTTSVLIGDWSISLVAQNPNAKVRGYFSDFKVDILHATNEIAMSFVPDFQLEKLEQKQMEIKASTNNGGNVVSFQRWDLDKMNDEKKHGSIMFALRVSSTIEFKTTSTSSGSLLLMNICDSLKIVFQNNTGTGTLDTGGNPVDCRLFM 256 SP A P+MMYY PG G PP PP +P YPP P Y PYPPQPQ Y+ PY+ PP ++ + V++LSV NFN ++ L DW+ + QN N K+ G+ SDFKVD+LH + +AMS+VPDF+L+K E K+++ K S+ SF D+ +M E+ GS+ LR++S +EFK+++ ++ L++ ICD LK+VFQN TG G LD G P+ C+L+M Sbjct: 31 SPSMAAPPNMMYYSPGMGYEPPLKGYPPRYDPYPNDYPPQPPRYDPYPPQPQVYHYPAGPYFNDPPTHHDTGENKAFYRGFLICCCVLLTGLFVATLVMALIMHPKLPTYTVNSLSVANFNASTTLTADWNTTFSIQNVNDKLSGFLSDFKVDLLHKNDVLAMSYVPDFELDKKEVKRIDSKMSSIG----FSFLTPDMHEMVKEQASGSVSLILRIASMVEFKSSTFTTRMSLVLAICDGLKVVFQNKTGNGELDNEGKPISCQLYM 294
BLAST of Vfaba.Hedin2.R1.5g153480.1 vs. UniProtKB/TrEMBL
Match: tr|V7CZX5|V7CZX5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_001G195100g PE=4 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 5.593e-47 Identity = 111/300 (37.00%), Postives = 156/300 (52.00%), Query Frame = 0 Query: 15 QSSSSEQQSSS----NTDTSPPPVAAPHMMYYQPGPG---------------GYPPGPHGPPPLHYHPYPPPPHGYPPYPPQPQGYYPGQAPYY--PPQNYHSDAA-------------------------------------VSALSVNNFNTTSVLIGDWSISLVAQNPNAKVRGYFSDFKVDILHATNEIAMSFVPDFQLEKLEQKQMEIKASTNNGGNVVSFQRWDLDKMNDEKKHGSIMFALRVSSTIEFKTTSTSSGSLLLMNICDSLKIVFQNNTGTGTLDTGGNPVDCRLFM 256 Q S Q+SSS +T PP A P+MMYY PG G GYPPG Y+PYP YPPQPQ Y+ PY+ PP ++ D V++LSV NFN ++ L DW+ + N N K+ G F+DFKVD+L+ + +AMSFVPDF+LEK E ++++ + S+N RW+LD+M E+ GS+ F LR++S +EFK+++ S+ L++ +CD LK+VFQNNTG G LD GG P+ C+L+M Sbjct: 12 QKGSFSQESSSYMHGDTAPPPPMGAPPNMMYYSPGMGYPPGAHAPPPPMPHQGYPPG--------YNPYPND------YPPQPQVYHYPAGPYFSNPPTYHNVDRTKAFVRGFVLCSCVIFAGLFAATLIMALMLHPQLPVYTVNSLSVANFNISTPLTADWNTTFSILNDNDKLNGVFTDFKVDLLYRDDALAMSFVPDFELEKKEIRRIDERMSSNG----FLLPRWELDEMAKEQASGSVTFILRIASMVEFKSSTISTKMSLILALCDGLKVVFQNNTGNGALDNGGRPIICQLYM 293
BLAST of Vfaba.Hedin2.R1.5g153480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A151S179|A0A151S179_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_029713 PE=4 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 6.924e-46 Identity = 98/252 (38.89%), Postives = 134/252 (53.17%), Query Frame = 0 Query: 48 GYPPGPHGPPPLHYHPYPPPPHGYPPYP---PQPQGYYPGQAPYY--PPQNYHSDAA--------------------------------------VSALSVNNFNTTSVLIGDWSISLVAQNPNAKVRGYFSDFKVDILHATNEIAMSFVPDFQLEKLEQKQMEIKASTNNGGNVVSFQRWDLDKMNDEKKHGSIMFALRVSSTIEFKTTSTSSGSLLLMNICDSLKIVFQNNTGTGTLDTGGNPVDCRLFM 256 GY PGP P + YPP GY PYP Q Y+ PY+ PP YH V++LSV NFNTTS L GDW+ S + QN N K+ G FS FK D+LH + +A+SFVPDF L+K + K +++K S+ SF W+L + E+ GSI F +R+SS + FK++S S+ L++ +CD LK+VFQNNTGTG L+ GG+P+ C+L+M Sbjct: 47 GYNPGPAAHMP--HQGYPP---GYTPYPNEYAQANVYHYPAGPYFRNPPPAYHRSGGGKAFIRGFIMCLCILFTAFFVATLVMALALHPQLPLYTVNSLSVLNFNTTSTLAGDWNASFMIQNINDKLTGEFSGFKADLLHKNDVVAVSFVPDFVLDKKQVKHVDVKPSSTG----TSFPEWNLGDLGKEQATGSITFTMRISSMVAFKSSSMSTRGSLVLALCDGLKVVFQNNTGTGALENGGSPILCQLYM 289
BLAST of Vfaba.Hedin2.R1.5g153480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6MCI6|A0A4D6MCI6_VIGUN (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG6g2828 PE=4 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 7.113e-46 Identity = 105/301 (34.88%), Postives = 152/301 (50.50%), Query Frame = 0 Query: 1 MADSSNHGNAPPKDQSSSSEQQSSSNTDTSPPPVAAPHMMYYQPGPGGYPPGPHGPPPLHYHPYPPPPHGYPPYP------PQPQGYYPGQAPYY--PPQNYHSDA-------------------------------------AVSALSVNNFNTTSVLIGDWSISLVAQNPNAKVRGYFSDFKVDILHATNEIAMSFVPDFQLEKLEQKQMEIKASTNNGGNVVSFQRWDLDKMNDEKKHGSIMFALRVSSTIEFKTTSTSSGSLLLMNICDSLKIVFQNNTGTGTLDTGGNPVDCRLFM 256 M DSS+ G ++ S E S + SPP A P+MMYY P G + PPP+ YPP GY PYP Q Q Y+ PY+ PP ++++ V++LSV NFN ++ L DW+ S QN N K+ G+ S FKVD+LH +AMS+VPDF L+K E K+++ K S+ F D+ +M ++ GS+ +R++S +EFK+ + ++ ++ ICD LK+VFQN+TG G LD GGNPV C+L+M Sbjct: 1 MMDSSHDGRGHHPSRAFSYESSSHGDRPASPPMEAPPNMMYYSPSMG------YQPPPMALQGYPP---GYDPYPNDYPPHSQSQVYHYPAGPYFSDPPTHHNAGGNKALLRGFLIFCCVIFGGLFLATLVMALMMHPKLPAYTVNSLSVANFNASTALTADWNTSFSIQNVNDKLNGFLSGFKVDLLHKNVILAMSYVPDFGLDKKEVKRIDAKMSSMG----FPFPTSDMVEMAKDQTSGSVTVVMRIASMVEFKSETFTTRMSFVLAICDGLKVVFQNHTGNGALDNGGNPVVCQLYM 288
BLAST of Vfaba.Hedin2.R1.5g153480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445FIX6|A0A445FIX6_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_052028 PE=4 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 1.076e-45 Identity = 101/291 (34.71%), Postives = 152/291 (52.23%), Query Frame = 0 Query: 7 HGNAPPKDQSSSSEQQSSSNTDTSPPPVAAPHMMYYQPGPGGYPPGPHGPPPLHYHPYPPPPHGYPPYPPQ--PQGYYPGQAPYY-PPQNYHSDAA--------------------------------------VSALSVNNFNTTSVLIGDWSISLVAQNPNAKVRGYFSDFKVDILHATNEIAMSFVPDFQLEKLEQKQMEIKASTNNGGNVVSFQRWDLDKMNDEKKHGSIMFALRVSSTIEFKTTSTSSGSLLLMNICDSLKIVFQNNTGTGTLDTGGNPVDCRLFM 256 H P ++S + + S + D PP VA P MMYY YP G + P P+ + YPP GY PYP + Q Y+ PY+ P YH+ +++LSV NFNTT +L +W+ S++ N N ++ G FSDFKVD+LH +A+S+VP+F+L K E K+++ +N SF + +LD M E+ GS+ FALR++S + F +++ S+ + L++ +C LK+VFQNNTG G LD G P+ C+L+M Sbjct: 5 HDERGPPNESLTHQSSSRRHGDAPPPTVAPPQMMYY------YPQG-YAPQPMPHQGYPP---GYAPYPNEYHQQPYHYPAGPYFSTPPTYHNGGGSKAFIRGFIMCSCLIFTCLFVATLIMALVLHPQLPVYTINSLSVANFNTTQLLTANWNTSIMIHNINNRLIGLFSDFKVDLLHKNYIVAVSYVPNFELNKNEVKRIDATPLSNG----FSFPKSNLDDMAKEQAGGSVTFALRMTSMVTFMSSTMSTRNTLILALCSGLKVVFQNNTGNGVLDNAGKPISCQLYM 281
BLAST of Vfaba.Hedin2.R1.5g153480.1 vs. Araport11
Match: AT3G52460.1 (| hydroxyproline-rich glycoprotein family protein | Chr3:19446970-19447872 FORWARD LENGTH=300 | 201606) HSP 1 Score: 69.3218 bits (168), Expect = 1.827e-13 Identity = 43/150 (28.67%), Postives = 73/150 (48.67%), Query Frame = 0 Query: 99 AVSALSVNNFNTTS-VLIGDWSISLVAQNPNAKVRGYFSDFKVDILH--ATNEIAMSFVPDFQLEKLEQKQMEIKASTNNGGNVV--SFQRWDLDKMNDEKKHGSIMFALRVSSTIEFKTTSTSSGSLLLMNICDSLKIVFQNNTGTGTL 243 +V+ SV+NFN T V W+ +L +N N K++GYF + + H A E FQ +E K+ + T G+ W +D+M E++ G++ F+LR++ + FKT ++ L C LK+ F+ +G G + Sbjct: 139 SVNNFSVSNFNVTGPVFSAQWTANLTIENQNTKLKGYFDRIQGLVYHQNAVGEDEFLATAFFQPVFVETKKSVVIGETLTAGDKEQPKVPSWVVDEMKKERETGTVTFSLRMAVWVTFKTDGWAARESGLKVFCGKLKVGFEGISGNGAV 288 The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.5g153480.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL) Total hits: 10
BLAST of Vfaba.Hedin2.R1.5g153480.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot) Total hits: 0
BLAST of Vfaba.Hedin2.R1.5g153480.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11) Total hits: 1
InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vfaba.Hedin2.R1.5g153480.1_vfh_v1 ID=Vfaba.Hedin2.R1.5g153480.1_vfh_v1; Name=Vfaba.Hedin2.R1.5g153480.1; organism=Vicia faba; type=mRNA; length=771bpback to top protein sequence of Vfaba.Hedin2.R1.5g153480.1_vfh_v1 >Vfaba.Hedin2.R1.5g153480.1_vfh_v1 ID=Vfaba.Hedin2.R1.5g153480.1_vfh_v1; Name=Vfaba.Hedin2.R1.5g153480.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=256bpback to top mRNA from alignment at chr5:1077881782..1077882666+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>Vfaba.Hedin2.R1.5g153480.1_vfh_v1 ID=Vfaba.Hedin2.R1.5g153480.1_vfh_v1; Name=Vfaba.Hedin2.R1.5g153480.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr5:1077881782..1077882666+ (Vicia fababack to top |