Vfaba.Hedin2.R1.5g165520.1
|
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Vfaba.Hedin2.R1.5g165520.1 vs. UniProtKB/TrEMBL
Match: tr|G7KSS5|G7KSS5_MEDTR (Multidrug resistance protein ABC transporter family protein OS=Medicago truncatula OX=3880 GN=11435285 PE=4 SV=1) HSP 1 Score: 320.857 bits (821), Expect = 9.012e-110 Identity = 150/182 (82.42%), Postives = 165/182 (90.66%), Query Frame = 0 Query: 1 MGNHFSFSSTIKIIHYDGSIQELDQPITVAELMLDHPKHVVVEFHSALKQKKPTPLPADKNLEMNKKYVMVPVKPGKPVGLKAEDCRRILSMVNSSLDSSNYLMCSQGFVPWLVKFLKKRNEAIGEVEKSLEINGEERFEFCEVLPEMMEERGEYLNLSRQLSGKGWKPSLDTIKEKKIKKK 182
MGNH SF +T KII+YDGS+QE DQPITVAELMLDHPKHVVVEFHSA+ QKKPTPLPADKNLEMNKKYVMVP+KPGKPVGL AEDC RILS+ NS+L+++NYLM SQGFVPWLV+FLKK+ IGEVE SL+IN EERF FCE LPEMMEER EYLNLSRQLSGKGWKPSLDTIKEKK+K+K
Sbjct: 1 MGNHISFHATTKIIYYDGSVQEFDQPITVAELMLDHPKHVVVEFHSAMNQKKPTPLPADKNLEMNKKYVMVPMKPGKPVGLSAEDCSRILSIANSALNTNNYLMSSQGFVPWLVRFLKKKKVEIGEVETSLQINEEERFNFCEFLPEMMEERAEYLNLSRQLSGKGWKPSLDTIKEKKVKRK 182
BLAST of Vfaba.Hedin2.R1.5g165520.1 vs. UniProtKB/TrEMBL
Match: tr|I3T980|I3T980_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 PE=2 SV=1) HSP 1 Score: 319.316 bits (817), Expect = 4.931e-109 Identity = 149/182 (81.87%), Postives = 165/182 (90.66%), Query Frame = 0 Query: 1 MGNHFSFSSTIKIIHYDGSIQELDQPITVAELMLDHPKHVVVEFHSALKQKKPTPLPADKNLEMNKKYVMVPVKPGKPVGLKAEDCRRILSMVNSSLDSSNYLMCSQGFVPWLVKFLKKRNEAIGEVEKSLEINGEERFEFCEVLPEMMEERGEYLNLSRQLSGKGWKPSLDTIKEKKIKKK 182
MGNH SF +T KII+YDGS+QE DQPITVAELMLDHPKHVVVEFHSA+ QKKPTPLPADKNLEMNKKYVMVP+KPGKPVGL AEDC RILS+ NS+L+++NYLM SQGFVPWLV+FLKK+ IGEVE SL+IN EERF FCE LPEM+EER EYLNLSRQLSGKGWKPSLDTIKEKK+K+K
Sbjct: 1 MGNHISFHATTKIIYYDGSVQEFDQPITVAELMLDHPKHVVVEFHSAMNQKKPTPLPADKNLEMNKKYVMVPMKPGKPVGLSAEDCSRILSIANSALNTNNYLMSSQGFVPWLVRFLKKKKVEIGEVETSLQINEEERFNFCEFLPEMVEERAEYLNLSRQLSGKGWKPSLDTIKEKKVKRK 182
BLAST of Vfaba.Hedin2.R1.5g165520.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2XTS1|A0A1S2XTS1_CICAR (uncharacterized protein LOC101498153 OS=Cicer arietinum OX=3827 GN=LOC101498153 PE=4 SV=1) HSP 1 Score: 285.419 bits (729), Expect = 8.711e-96 Identity = 135/181 (74.59%), Postives = 158/181 (87.29%), Query Frame = 0 Query: 1 MGNHFSFSSTIKIIHYDGSIQELDQPITVAELMLDHPKHVVVEFHSALKQKKPTPLPADKNLEMNKKYVMVPVKPGKPVGLKAEDCRRILSMVNSSLDSSNYLMCSQGFVPWLVKFLKKRNEAIGEVEKSLEINGEERFEFCEVLPEMMEERGEYLNLSRQLSGKGWKPSLDTIKEKKIKK 181
MGNH SF STIKIIHY+G IQ+ DQP+TVAELML+HPKHVVV+FHSAL QK+PTPLPADKNL+MNK YVMVPVKPGKPVGL E+CRR+LS+V SS++ S+Y MCSQGF+PWLV+FLKK++ IGE E +L+I EERF+FCE LPEMMEER EY +S+QLSGKGWKP LDTIKE K+KK
Sbjct: 1 MGNHISFHSTIKIIHYNGLIQKFDQPLTVAELMLEHPKHVVVDFHSALNQKRPTPLPADKNLDMNKTYVMVPVKPGKPVGLSVEECRRVLSIVESSMN-SDYFMCSQGFLPWLVRFLKKKSVVIGEGETTLKIMEEERFDFCEFLPEMMEERAEY--MSKQLSGKGWKPCLDTIKENKVKK 178
BLAST of Vfaba.Hedin2.R1.5g165520.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3L6A2|A0A2K3L6A2_TRIPR (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g029970 PE=4 SV=1) HSP 1 Score: 228.794 bits (582), Expect = 9.112e-74 Identity = 123/150 (82.00%), Postives = 134/150 (89.33%), Query Frame = 0 Query: 33 MLDHPKHVVVEFHSALKQKKPTPLPADKNLEMNKKYVMVPVKPGKPVGLKAEDCRRILSMVNSSLDSSNYLMCSQGFVPWLVKFLKKRNEAIGEVEKSLEINGEERFEFCEVLPEMMEERGEYLNLSRQLSGKGWKPSLDTIKEKKIKKK 182
ML+HPKHVVVEFHSA+ QKKPTPLPADKNLEMNKKYVMVP+KPGKP+GL AEDCRRI VNSSL S NYLM SQG +PWLV+F+KK+ IGEVE SL+IN EERFEFCE LPEMMEER EYLNLSRQLSGKGWKPSLDTIKEKK++KK
Sbjct: 1 MLEHPKHVVVEFHSAVNQKKPTPLPADKNLEMNKKYVMVPMKPGKPIGLSAEDCRRI---VNSSLHS-NYLMRSQGLIPWLVRFMKKKKVEIGEVETSLQINEEERFEFCEFLPEMMEERAEYLNLSRQLSGKGWKPSLDTIKEKKVEKK 146
BLAST of Vfaba.Hedin2.R1.5g165520.1 vs. UniProtKB/TrEMBL
Match: tr|A0A371GD70|A0A371GD70_MUCPR (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_29924 PE=4 SV=1) HSP 1 Score: 220.32 bits (560), Expect = 2.293e-70 Identity = 108/179 (60.34%), Postives = 133/179 (74.30%), Query Frame = 0 Query: 1 MGNHFSFSSTIKIIHYDGSIQELDQPITVAELMLDHPKHVVVEFHSALKQKKPTPLPADKNLEMNKKYVMVPVKPGKPVGLKAEDCRRILSMVNSSLDSSNYLMCSQGFVPWLVKFLKKRNEAIGEVEKSLEINGEERFEFCEVLPEMMEERGEYLNLSRQLSGKGWKPSLDTIKEKKI 179
MGN + KI+++DGS++E D+ +TVAELML+HP+ VVVEF SA+KQK+PTPLPAD+ LEM K YVMVPVK GKPVGL +ED RRIL +VNSSL S+NY + S F PWL + EA ++K E+ ER+ F E LPEM+E R EY +SRQLSGKGWKPSLDTIKEKK+
Sbjct: 1 MGNQLGRDAAGKIVYWDGSVKEFDEEVTVAELMLEHPQQVVVEFDSAVKQKRPTPLPADEKLEMKKTYVMVPVKRGKPVGLSSEDSRRILLIVNSSLHSNNYFVSSSSFFPWLARLFHTEGEASAMLQKKEEV---ERYSFSEFLPEMIEGRPEY--MSRQLSGKGWKPSLDTIKEKKV 174
BLAST of Vfaba.Hedin2.R1.5g165520.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9U9I0|A0A0L9U9I0_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan03g279500 PE=4 SV=1) HSP 1 Score: 216.853 bits (551), Expect = 1.164e-68 Identity = 109/183 (59.56%), Postives = 139/183 (75.96%), Query Frame = 0 Query: 1 MGNHFSFSSTIKIIHYDGSIQELDQPITVAELMLDHPKHVVVEFHSALKQKKPTPLPADKNLEMNKKYVMVPVKPGKPVGLKAEDCRRILSMVNSSLDSSNYLMCSQGFVPWLVK-FLKKRNEAIGEVEKSLEINGEERFEFCEVLPEMMEERGEYLNLSRQLSGKGWKPSLDTIKEKKIKKK 182
MGN + T KI+++DGS+QE QP+TVAELM+DHP+ VV++FHSA+ QK+PTPLPAD+ LEM K YVMVPVK GKPVGL +ED RRI+ +VNS+L Y + S GF+PWL F +R A+ + ++ E N +E++ FCE LPEM+E R EY LSRQLSGKGWKPSLDTIKEKK+ +K
Sbjct: 1 MGNQIA---TAKIVYWDGSVQEFHQPLTVAELMMDHPQQVVLDFHSAVNQKRPTPLPADQKLEMKKTYVMVPVKQGKPVGLSSEDSRRIIFIVNSALH-PKYFVSSSGFLPWLAGLFNSERGVAVLQEKEETE-NAQEKYGFCEFLPEMLEGRPEY--LSRQLSGKGWKPSLDTIKEKKVNRK 176
BLAST of Vfaba.Hedin2.R1.5g165520.1 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6MBD2|A0A4D6MBD2_VIGUN (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG6g2996 PE=4 SV=1) HSP 1 Score: 215.312 bits (547), Expect = 4.416e-68 Identity = 109/183 (59.56%), Postives = 133/183 (72.68%), Query Frame = 0 Query: 1 MGNHFSFS-STIKIIHYDGSIQELDQPITVAELMLDHPKHVVVEFHSALKQKKPTPLPADKNLEMNKKYVMVPVKPGKPVGLKAEDCRRILSMVNSSLDSSNYLMCSQGFVPWLVKFLKKRNEAIGEVEKSLEINGEERFEFCEVLPEMMEERGEYLNLSRQLSGKGWKPSLDTIKEKKIKKK 182
MGN + +T KII++DGS+QE Q +TVAELM++HP+ VV++FHSA+ QK+PTPLPAD+ LEM K YVMVPVK GKPVGL ED RRIL +VNS+L S + + S GF+PWL + EK +E N EE++ FCE LPEM E R EY LSRQLSGKGWKPSLDTIKEKK+ K
Sbjct: 1 MGNQIATDHATAKIIYWDGSVQEFHQSLTVAELMMEHPQQVVLDFHSAVNQKRPTPLPADQKLEMKKTYVMVPVKQGKPVGLSTEDSRRILFIVNSAL-CSKFFVSSSGFLPWLAGLFRSERGVAVLQEKEME-NAEEKYGFCEFLPEMAEGRPEY--LSRQLSGKGWKPSLDTIKEKKVNTK 179
BLAST of Vfaba.Hedin2.R1.5g165520.1 vs. UniProtKB/TrEMBL
Match: tr|I3SI31|I3SI31_LOTJA (Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1) HSP 1 Score: 214.927 bits (546), Expect = 6.616e-68 Identity = 115/178 (64.61%), Postives = 138/178 (77.53%), Query Frame = 0 Query: 1 MGNHFSF----SSTIKIIHYDGSIQELDQPITVAELMLDHPKHVVVEFHSALK-QKKPTPLPADKNLEMNKKYVMVPVKPGKPVGLKAEDCRRILSMVNSSLDSSNYLMCSQGFVPWLVKFLKKRNEAIGEVEKSLEINGEERFEFCEVLPEMMEERGEYLNLSRQLSGKGWKPSLDT 173
MGNH S +T KI++ DGS+QE DQP+TVAELML+HP+ VVVEFHSAL QK+PTPLPADK LEM K YVM+P+K GKPVGL EDC R+LS+VNSSL SNYLMCS GF+PW+ + K + A G V ++L+I EER++F E LPEM+EER EY +SRQLSGK WKPSLDT
Sbjct: 1 MGNHISSFPASDATGKIVYCDGSVQEFDQPLTVAELMLEHPQQVVVEFHSALNHQKRPTPLPADKKLEMKKTYVMLPMKRGKPVGLSGEDCHRVLSIVNSSLH-SNYLMCS-GFLPWIARVFKTESPANG-VAETLQIK-EERYDFSEFLPEMIEERPEY--MSRQLSGKEWKPSLDT 172
BLAST of Vfaba.Hedin2.R1.5g165520.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3S084|A0A0S3S084_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.04G389600 PE=4 SV=1) HSP 1 Score: 216.468 bits (550), Expect = 1.408e-67 Identity = 109/183 (59.56%), Postives = 139/183 (75.96%), Query Frame = 0 Query: 1 MGNHFSFSSTIKIIHYDGSIQELDQPITVAELMLDHPKHVVVEFHSALKQKKPTPLPADKNLEMNKKYVMVPVKPGKPVGLKAEDCRRILSMVNSSLDSSNYLMCSQGFVPWLVK-FLKKRNEAIGEVEKSLEINGEERFEFCEVLPEMMEERGEYLNLSRQLSGKGWKPSLDTIKEKKIKKK 182
MGN + T KI+++DGS+QE QP+TVAELM+DHP+ VV++FHSA+ QK+PTPLPAD+ LEM K YVMVPVK GKPVGL +ED RRI+ +VNS+L Y + S GF+PWL F +R A+ + ++ E N +E++ FCE LPEM+E R EY LSRQLSGKGWKPSLDTIKEKK+ +K
Sbjct: 73 MGNQIA---TAKIVYWDGSVQEFHQPLTVAELMMDHPQQVVLDFHSAVNQKRPTPLPADQKLEMKKTYVMVPVKQGKPVGLSSEDSRRIIFIVNSALH-PKYFVSSSGFLPWLAGLFNSERGVAVLQEKEETE-NAQEKYGFCEFLPEMLEGRPEY--LSRQLSGKGWKPSLDTIKEKKVNRK 248
BLAST of Vfaba.Hedin2.R1.5g165520.1 vs. UniProtKB/TrEMBL
Match: tr|V7CYD2|V7CYD2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_001G212200g PE=4 SV=1) HSP 1 Score: 211.46 bits (537), Expect = 1.960e-66 Identity = 105/183 (57.38%), Postives = 132/183 (72.13%), Query Frame = 0 Query: 1 MGNHFSFS-STIKIIHYDGSIQELDQPITVAELMLDHPKHVVVEFHSALKQKKPTPLPADKNLEMNKKYVMVPVKPGKPVGLKAEDCRRILSMVNSSLDSSNYLMCSQGFVPWLVKFLKKRNEAIGEVEKSLEINGEERFEFCEVLPEMMEERGEYLNLSRQLSGKGWKPSLDTIKEKKIKKK 182
MGN + +T KI+++DGS++E +P+T AELM++HP+ VV++FHSA+KQK+P PLPAD+ LEM K YVMVPVKPGKPVGL ++D RRIL +VNS+L S Y + S GF+PWL E K N EE++ F E LPEM+E R EY LSRQLSGKGWKPSLDTIKEKK+ K
Sbjct: 1 MGNQIARDHATGKIVYWDGSVREFREPLTAAELMMEHPQQVVLDFHSAVKQKRPAPLPADQKLEMKKTYVMVPVKPGKPVGLSSQDSRRILFIVNSALH-SKYFVSSSGFLPWLAGLFHPEREVAVLQNKEAAENAEEKYGFSEFLPEMVEGRPEY--LSRQLSGKGWKPSLDTIKEKKVNTK 180
BLAST of Vfaba.Hedin2.R1.5g165520.1 vs. Araport11
Match: AT4G02090.1 (| multidrug resistance protein ABC transporter family protein | Chr4:923122-923730 FORWARD LENGTH=202 | 201606) HSP 1 Score: 103.605 bits (257), Expect = 1.063e-27 Identity = 77/193 (39.90%), Postives = 105/193 (54.40%), Query Frame = 0 Query: 12 KIIHYDGSIQELDQPITVAELMLDHPKHVVVEFH---------SALKQKKPTPLPADKNLEMNKKYVMVPVK-------PGKPVGLKAEDCRRIL----SMVNSSLDSSNYLMCSQGFVPWLV-KFLKKRNEAIGEVEKSLEINGEERFEFCEVLPEMMEE-RGEYLNLSRQLSGKGWKPSLDTIKEKKIKKK 182
K++ DG +Q L++ TVAE+ML++P+HVVVEF + ++K PLPADK LE K Y+++P K L +E+ R++L +MV SS S Y +G +PW + K N A V + + R E EM EE R E+L SRQLSG+GWKPSLD I+EKK KKK
Sbjct: 19 KVVLSDGRVQNLEEETTVAEIMLENPQHVVVEFDPSSISFNNDAKTVKRKLAPLPADKTLEPGKIYLVLPAKRSGGRAAKSSSAVLTSEEMRKMLFSATAMVRSSF--SYY----EGILPWFTTRSYKNNNPATDTVVAATSVG---RLE-----AEMEEEDRPEFL--SRQLSGRGWKPSLDPIREKKAKKK 195 The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.5g165520.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of Vfaba.Hedin2.R1.5g165520.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of Vfaba.Hedin2.R1.5g165520.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11) Total hits: 1 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vfaba.Hedin2.R1.5g165520.1_vfh_v1 ID=Vfaba.Hedin2.R1.5g165520.1_vfh_v1; Name=Vfaba.Hedin2.R1.5g165520.1; organism=Vicia faba; type=mRNA; length=552bpback to top protein sequence of Vfaba.Hedin2.R1.5g165520.1_vfh_v1 >Vfaba.Hedin2.R1.5g165520.1_vfh_v1 ID=Vfaba.Hedin2.R1.5g165520.1_vfh_v1; Name=Vfaba.Hedin2.R1.5g165520.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=183bpback to top mRNA from alignment at chr5:1148618466..1148619528- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>Vfaba.Hedin2.R1.5g165520.1_vfh_v1 ID=Vfaba.Hedin2.R1.5g165520.1_vfh_v1; Name=Vfaba.Hedin2.R1.5g165520.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr5:1148618466..1148619528- (Vicia fababack to top Annotated Terms
The
following terms have been associated with
this mRNA:
|