Vfaba.Hedin2.R1.5g197400.1
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Vfaba.Hedin2.R1.5g197400.1 vs. UniProtKB/TrEMBL
Match: tr|G7JNT6|G7JNT6_MEDTR (Putative ribonuclease III OS=Medicago truncatula OX=3880 GN=11426389 PE=2 SV=1) HSP 1 Score: 196.438 bits (498), Expect = 4.767e-61 Identity = 98/116 (84.48%), Postives = 102/116 (87.93%), Query Frame = 0 Query: 53 SEENNKAFSIYGTTIIETSVSFNLLSKDVDVSAKEVNRRLSLISNVDSSCAVDGLRLGLHKVVRVSPKTNSSSTAVVCGAFRSIFAAIALDTGDLDTAGNVLLTVHGRDLGFSMDM 168
SEENNKAFSI G T IETSVSFNLLSKDVD+SAKE+NRRLSLISNVDSSCAVD RLGLHKVVRVSPKTNSSSTAVVCGAFRSIF AI+LDTG + AGNV LTVHGRDLG M
Sbjct: 63 SEENNKAFSILGATSIETSVSFNLLSKDVDISAKELNRRLSLISNVDSSCAVDAKRLGLHKVVRVSPKTNSSSTAVVCGAFRSIFGAISLDTGSSEAAGNVFLTVHGRDLGVYAAM 178
BLAST of Vfaba.Hedin2.R1.5g197400.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6MBB7|A0A2Z6MBB7_TRISU (RNase III domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_185740 PE=4 SV=1) HSP 1 Score: 194.126 bits (492), Expect = 3.237e-60 Identity = 103/157 (65.61%), Postives = 119/157 (75.80%), Query Frame = 0 Query: 17 EHQSFSFLKPEIQTPSWLELE-----QDLNLHHTPSKINIISEENNKAFSIYGTTIIETSVSFNLLSKDVDVSAKEVNRRLSLISNVDSSCAVDGLRLGLHKVVRVSPKTNSSSTAVVCGAFRSIFAAIALDTGDLDTAGNVLLTVHGRDLGFSMDM 168
+ QSFS +QT L+ + +LNL SEENNKAFSI G TIIE++VSFNLLSKD+D+SAKE+NR+LSLISNVDSSCAVD + LGLHKVVRVSPKTN+SSTAVVCGAFRSIFAAIA+D G+ D+AGNV L VHGRDLG M
Sbjct: 22 QGQSFSPFSSALQT---LQKQIGYNFTNLNLLRRAMTHASFSEENNKAFSIVGATIIESTVSFNLLSKDIDISAKELNRKLSLISNVDSSCAVDAMNLGLHKVVRVSPKTNTSSTAVVCGAFRSIFAAIAIDKGNTDSAGNVFLNVHGRDLGVYAAM 175
BLAST of Vfaba.Hedin2.R1.5g197400.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2YRP1|A0A1S2YRP1_CICAR (protein NUCLEAR FUSION DEFECTIVE 2 OS=Cicer arietinum OX=3827 GN=LOC101489876 PE=4 SV=1) HSP 1 Score: 193.356 bits (490), Expect = 6.521e-60 Identity = 95/117 (81.20%), Postives = 102/117 (87.18%), Query Frame = 0 Query: 52 ISEENNKAFSIYGTTIIETSVSFNLLSKDVDVSAKEVNRRLSLISNVDSSCAVDGLRLGLHKVVRVSPKTNSSSTAVVCGAFRSIFAAIALDTGDLDTAGNVLLTVHGRDLGFSMDM 168
SEENNKAFSI+G TIIETSVSFNLLSKDVDVSAKE+NRR+SLISNVDSSCAVD +RL LHKVVRVSPKTNSSS +V+CGAFRSIF AIALD + D AG V LTVHGRD G SM M
Sbjct: 58 FSEENNKAFSIFGATIIETSVSFNLLSKDVDVSAKELNRRISLISNVDSSCAVDAMRLSLHKVVRVSPKTNSSSPSVLCGAFRSIFGAIALDAENSDDAGKVFLTVHGRDFGVSMAM 174
BLAST of Vfaba.Hedin2.R1.5g197400.1 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6KUH5|A0A4D6KUH5_VIGUN (Ribonuclease III OS=Vigna unguiculata OX=3917 GN=DEO72_LG2g1416 PE=4 SV=1) HSP 1 Score: 174.481 bits (441), Expect = 1.849e-52 Identity = 84/112 (75.00%), Postives = 97/112 (86.61%), Query Frame = 0 Query: 52 ISEENNKAFSIYGTTIIETSVSFNLLSKDVDVSAKEVNRRLSLISNVDSSCAVDGLRLGLHKVVRVSPKTNSSSTAVVCGAFRSIFAAIALDTGDLDTAGNVLLTVHGRDLG 163
SEENNKAF+I G T+IETSVSF+LLSKDVD+S KE+NRR+S I+NVDSSCAVDG RLGL K+VRVSPKTNSS+ AVVCGAFR+IFAAI++DTG D AGNV +HG DLG
Sbjct: 63 FSEENNKAFAILGATVIETSVSFHLLSKDVDISPKELNRRVSQITNVDSSCAVDGTRLGLQKIVRVSPKTNSSAPAVVCGAFRAIFAAISIDTGKSDDAGNVFWNLHGGDLG 174
BLAST of Vfaba.Hedin2.R1.5g197400.1 vs. UniProtKB/TrEMBL
Match: tr|V7CB75|V7CB75_PHAVU (RNase III domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_003G198700g PE=4 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 9.720e-52 Identity = 83/112 (74.11%), Postives = 97/112 (86.61%), Query Frame = 0 Query: 52 ISEENNKAFSIYGTTIIETSVSFNLLSKDVDVSAKEVNRRLSLISNVDSSCAVDGLRLGLHKVVRVSPKTNSSSTAVVCGAFRSIFAAIALDTGDLDTAGNVLLTVHGRDLG 163
SEENNKAF+I G T+IETSVSF+LLSKDVD+S KE+N RLS I+NVDSSCAVDG RLGLHK+VRVSPKTNSS+ AVVCGAFR+IFAAI++D+G D AGNV +HG +LG
Sbjct: 63 FSEENNKAFAILGATVIETSVSFHLLSKDVDISPKELNHRLSQITNVDSSCAVDGTRLGLHKIVRVSPKTNSSAPAVVCGAFRAIFAAISIDSGMPDNAGNVFWNLHGGELG 174
BLAST of Vfaba.Hedin2.R1.5g197400.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3UPN5|A0A1S3UPN5_VIGRR (protein NUCLEAR FUSION DEFECTIVE 2 OS=Vigna radiata var. radiata OX=3916 GN=LOC106767502 PE=4 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 1.209e-51 Identity = 83/112 (74.11%), Postives = 96/112 (85.71%), Query Frame = 0 Query: 52 ISEENNKAFSIYGTTIIETSVSFNLLSKDVDVSAKEVNRRLSLISNVDSSCAVDGLRLGLHKVVRVSPKTNSSSTAVVCGAFRSIFAAIALDTGDLDTAGNVLLTVHGRDLG 163
SEENNKAF+I G +IETSVSF+LLSKDVD+S KE+NRRLS +S+VDSSCAVDG RLGL K+VRVSPKTNSS+ AVVCGAFR+IFAAI++DTG D AGNV +HG DLG
Sbjct: 63 FSEENNKAFAILGAAVIETSVSFHLLSKDVDISPKELNRRLSQVSSVDSSCAVDGTRLGLQKIVRVSPKTNSSTPAVVCGAFRAIFAAISIDTGKSDDAGNVFWNLHGGDLG 174
BLAST of Vfaba.Hedin2.R1.5g197400.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3LJ38|A0A2K3LJ38_TRIPR (Ribonuclease 3-like protein OS=Trifolium pratense OX=57577 GN=L195_g034538 PE=4 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 2.149e-51 Identity = 87/117 (74.36%), Postives = 99/117 (84.62%), Query Frame = 0 Query: 53 SEENNKAFSIYGTTIIETSVSFNLLSKDVDVSAKEVNRRLSLISNVDSSCAVDGLRLGLHKVVRVSPKTNSSSTAVVCGAFRSIFAAIALDTGDLDTAGNVLLTVHGR-DLGFSMDM 168
S+ENNKAFSI G TIIE++VSFNL+SK +D+SAKE+N +LSLISNVDSSCAVDG+ LGLHKVVRVS KTNSSSTAVVCGAFRSIFAAIA+DTG+ AGN L +HG DLG M
Sbjct: 58 SQENNKAFSIVGATIIESTVSFNLISKYIDISAKELNHKLSLISNVDSSCAVDGINLGLHKVVRVSSKTNSSSTAVVCGAFRSIFAAIAIDTGNPCNAGNFFLNIHGGLDLGVYAAM 174
BLAST of Vfaba.Hedin2.R1.5g197400.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3R6E2|A0A0S3R6E2_PHAAN (RNase III domain-containing protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.01G407200 PE=4 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 2.156e-51 Identity = 83/112 (74.11%), Postives = 96/112 (85.71%), Query Frame = 0 Query: 52 ISEENNKAFSIYGTTIIETSVSFNLLSKDVDVSAKEVNRRLSLISNVDSSCAVDGLRLGLHKVVRVSPKTNSSSTAVVCGAFRSIFAAIALDTGDLDTAGNVLLTVHGRDLG 163
SEENNKAF+I G +IETSVSF+LLSKDVD+S KE+NRRLS I++VDSSCAVDG RLGL K+VRVSPKTNSS+ AVVCGAFR+IFAAI++DTG D AGNV +HG DLG
Sbjct: 63 FSEENNKAFAILGAAVIETSVSFHLLSKDVDISPKELNRRLSQITSVDSSCAVDGTRLGLQKIVRVSPKTNSSAPAVVCGAFRAIFAAISIDTGKSDDAGNVFWNLHGGDLG 174
BLAST of Vfaba.Hedin2.R1.5g197400.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9TQR0|A0A0L9TQR0_PHAAN (RNase III domain-containing protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan01g238200 PE=4 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 2.156e-51 Identity = 83/112 (74.11%), Postives = 96/112 (85.71%), Query Frame = 0 Query: 52 ISEENNKAFSIYGTTIIETSVSFNLLSKDVDVSAKEVNRRLSLISNVDSSCAVDGLRLGLHKVVRVSPKTNSSSTAVVCGAFRSIFAAIALDTGDLDTAGNVLLTVHGRDLG 163
SEENNKAF+I G +IETSVSF+LLSKDVD+S KE+NRRLS I++VDSSCAVDG RLGL K+VRVSPKTNSS+ AVVCGAFR+IFAAI++DTG D AGNV +HG DLG
Sbjct: 63 FSEENNKAFAILGAAVIETSVSFHLLSKDVDISPKELNRRLSQITSVDSSCAVDGTRLGLQKIVRVSPKTNSSAPAVVCGAFRAIFAAISIDTGKSDDAGNVFWNLHGGDLG 174
BLAST of Vfaba.Hedin2.R1.5g197400.1 vs. UniProtKB/TrEMBL
Match: tr|I1MTJ0|I1MTJ0_SOYBN (RNase III domain-containing protein OS=Glycine max OX=3847 GN=GLYMA_17G091300 PE=4 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 3.913e-51 Identity = 84/118 (71.19%), Postives = 101/118 (85.59%), Query Frame = 0 Query: 52 ISEENNKAFSIYGTTIIETSVSFNLLSKDVDVSAKEVNRRLSLISNVDSSCAVDGLRLGLHKVVRVSPKTNSSSTAVVCGAFRSIFAAIALDTGDLDTAGNVLLTVH-GRDLGFSMDM 168
SEENNKAF+I G ++IETSVSF+LLS+DVD+S+KE+NRRLS I+NVDSSCAVDG RLGLHKVVRVSPKTNSS+ AVVCGAFR+IF A+A+DTG D AGNV +H G DLG ++ +
Sbjct: 71 FSEENNKAFAILGASVIETSVSFHLLSRDVDLSSKELNRRLSQITNVDSSCAVDGTRLGLHKVVRVSPKTNSSAPAVVCGAFRAIFGAVAIDTGKSDDAGNVFWNLHGGGDLGVAVAL 188
BLAST of Vfaba.Hedin2.R1.5g197400.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9FYL8|NFD2_ARATH (Protein NUCLEAR FUSION DEFECTIVE 2 OS=Arabidopsis thaliana OX=3702 GN=NFD2 PE=2 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 9.782e-38 Identity = 63/116 (54.31%), Postives = 87/116 (75.00%), Query Frame = 0 Query: 53 SEENNKAFSIYGTTIIETSVSFNLLSKDVDVSAKEVNRRLSLISNVDSSCAVDGLRLGLHKVVRVSPKTNSSSTAVVCGAFRSIFAAIALDTGDLDTAGNVLLTVHGRDLGFSMDM 168
S+ENNKA SI+GT IIET+VS L+KD+D+S+K + R +S +SNV+SSCA+DG RLGL K++RVS KT++S++A++C FR+IF AIA+D G +D A V VHG G + M
Sbjct: 75 SQENNKALSIFGTHIIETAVSLQFLAKDIDISSKALGRLISEVSNVESSCALDGDRLGLGKIIRVSTKTDASNSAILCTGFRAIFGAIAIDAGTVDEAIKVFWKVHGARAGRLVSM 190
BLAST of Vfaba.Hedin2.R1.5g197400.1 vs. Araport11
Match: AT1G24450.1 (| Ribonuclease III family protein | Chr1:8664201-8665077 FORWARD LENGTH=191 | 201606) HSP 1 Score: 130.954 bits (328), Expect = 1.001e-38 Identity = 63/116 (54.31%), Postives = 87/116 (75.00%), Query Frame = 0 Query: 53 SEENNKAFSIYGTTIIETSVSFNLLSKDVDVSAKEVNRRLSLISNVDSSCAVDGLRLGLHKVVRVSPKTNSSSTAVVCGAFRSIFAAIALDTGDLDTAGNVLLTVHGRDLGFSMDM 168
S+ENNKA SI+GT IIET+VS L+KD+D+S+K + R +S +SNV+SSCA+DG RLGL K++RVS KT++S++A++C FR+IF AIA+D G +D A V VHG G + M
Sbjct: 75 SQENNKALSIFGTHIIETAVSLQFLAKDIDISSKALGRLISEVSNVESSCALDGDRLGLGKIIRVSTKTDASNSAILCTGFRAIFGAIAIDAGTVDEAIKVFWKVHGARAGRLVSM 190 The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.5g197400.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of Vfaba.Hedin2.R1.5g197400.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot) Total hits: 1 Position : 0 Zoom : x 1
BLAST of Vfaba.Hedin2.R1.5g197400.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11) Total hits: 1 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vfaba.Hedin2.R1.5g197400.1_vfh_v1 ID=Vfaba.Hedin2.R1.5g197400.1_vfh_v1; Name=Vfaba.Hedin2.R1.5g197400.1; organism=Vicia faba; type=mRNA; length=507bpback to top protein sequence of Vfaba.Hedin2.R1.5g197400.1_vfh_v1 >Vfaba.Hedin2.R1.5g197400.1_vfh_v1 ID=Vfaba.Hedin2.R1.5g197400.1_vfh_v1; Name=Vfaba.Hedin2.R1.5g197400.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=168bpback to top mRNA from alignment at chr5:1354596545..1354597444- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>Vfaba.Hedin2.R1.5g197400.1_vfh_v1 ID=Vfaba.Hedin2.R1.5g197400.1_vfh_v1; Name=Vfaba.Hedin2.R1.5g197400.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr5:1354596545..1354597444- (Vicia fababack to top Annotated Terms
The
following terms have been associated with
this mRNA:
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