Vfaba.Hedin2.R1.6g015640.2

Transcript Overview
NameVfaba.Hedin2.R1.6g015640.2
Unique NameVfaba.Hedin2.R1.6g015640.2_vfh_v1
TypemRNA
OrganismVicia faba (Faba bean)
Sequence length375
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr6chromosomechr6:125985701..125986279 +Vicia faba inbred line Hedin/2 genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vfhzwsR530Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vfhzwsR591Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
asvfhL170Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvfhL244Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvfhL708Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cavfhL070Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavfhL079Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavfhL576Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvfhL0124Cajanus cajan Asha genome v1.0Cajanus cajan
ccvfhL0192Cajanus cajan Asha genome v1.0Cajanus cajan
pvvfhL187Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
crvfhL453Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvfhL536Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
tifvfhL418Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuR643Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vfhvuR691Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vfhvuR698Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caivfhL106Cicer arietinum ICC 4958 genome v2Cicer arietinum
caivfhL107Cicer arietinum ICC 4958 genome v2Cicer arietinum
anvfhL0127Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL0310Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL1024Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL1088Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL1096Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL1179Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvfhL1191Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
vfhvrvR653Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvrvR685Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvuaR583Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vfhvssR666Vicia sativa cv. Studenica genome v1.0Vicia sativa
vfhvssR677Vicia sativa cv. Studenica genome v1.0Vicia sativa
vfhvuaR627Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
avjvfhL114Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvfhL173Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvfhL715Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvfhL060Cicer arietinum
carvfhL485Cicer arietinum
carvfhL507Cicer arietinum
ccavfhL109Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavfhL434Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavfhL712Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vfhvumR800Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvumR807Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvumR819Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvumR827Vigna umbellata FF25 genome v1.0Vigna umbellata
vfhvvaR718Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vasvfhL547Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvfhL604Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvfhL615Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvfhL673Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vfhvstR788Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vfhvstR794Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vfhvstR808Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vfhvstR818Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvfvfhL188Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvfhL506Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvfhL557Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vfhvunR598Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vfhvunR644Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vfhvunR649Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.6g015640Vfaba.Hedin2.R1.6g015640_vfh_v1Vicia fabagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.6g015640.2_vfh_v1-exonVfaba.Hedin2.R1.6g015640.2_vfh_v1-exon-chr6_vfh_v1:125985701..125985924Vicia fabaexon
Vfaba.Hedin2.R1.6g015640.2_vfh_v1-exonVfaba.Hedin2.R1.6g015640.2_vfh_v1-exon-chr6_vfh_v1:125986070..125986184Vicia fabaexon
Vfaba.Hedin2.R1.6g015640.2_vfh_v1-exonVfaba.Hedin2.R1.6g015640.2_vfh_v1-exon-chr6_vfh_v1:125986244..125986279Vicia fabaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.6g015640.2_vfh_v1-cdsVfaba.Hedin2.R1.6g015640.2_vfh_v1-cds-chr6_vfh_v1:125985701..125985924Vicia fabaCDS
Vfaba.Hedin2.R1.6g015640.2_vfh_v1-cdsVfaba.Hedin2.R1.6g015640.2_vfh_v1-cds-chr6_vfh_v1:125986070..125986184Vicia fabaCDS
Vfaba.Hedin2.R1.6g015640.2_vfh_v1-cdsVfaba.Hedin2.R1.6g015640.2_vfh_v1-cds-chr6_vfh_v1:125986244..125986279Vicia fabaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.6g015640.2_vfh_v1Vfaba.Hedin2.R1.6g015640.2_vfh_v1Vicia fabapolypeptide
Vfaba.Hedin2.R1.6g015640.2_vfh_v1Vfaba.Hedin2.R1.6g015640.2_vfh_v1-proteinVicia fabapolypeptide


Homology
[Close]
BLAST of Vfaba.Hedin2.R1.6g015640.2 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6MQD0|A0A2Z6MQD0_TRISU (Trafficking protein particle complex subunit OS=Trifolium subterraneum OX=3900 GN=TSUD_270880 PE=3 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 1.201e-82
Identity = 119/121 (98.35%), Postives = 120/121 (99.17%), Query Frame = 0 
Query:    1 MQFFGGSEISPSPPPPTASGNNGHMLYVFNRNGICLLYREWNRPLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTSAEKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKSLPDAYSG 121
            MQFFGGSEISPSPP PTASGNNGHMLYVFNRNGICLLYREWNRPLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTSAEKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKSLP+AYSG
Sbjct:    1 MQFFGGSEISPSPPAPTASGNNGHMLYVFNRNGICLLYREWNRPLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTSAEKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKSLPNAYSG 121
[Close]
BLAST of Vfaba.Hedin2.R1.6g015640.2 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6MNE3|A0A2Z6MNE3_TRISU (Trafficking protein particle complex subunit OS=Trifolium subterraneum OX=3900 GN=TSUD_255010 PE=3 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 2.642e-80
Identity = 119/127 (93.70%), Postives = 119/127 (93.70%), Query Frame = 0 
Query:    1 MQFFGGSEISPSPPPPTASGNNGHMLYVFNRNGICLLYREWNRPLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTSAEKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKSLPD-----AYSGI 122
            MQFFGGSEISPSPP PTASGNNGHMLYVFNRNGICLLYREWNRPLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTSAEKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIK L D     AYSGI
Sbjct:    1 MQFFGGSEISPSPPAPTASGNNGHMLYVFNRNGICLLYREWNRPLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTSAEKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKILVDTVTAIAYSGI 127
[Close]
BLAST of Vfaba.Hedin2.R1.6g015640.2 vs. UniProtKB/TrEMBL
Match: tr|A0A072UIV4|A0A072UIV4_MEDTR (Trafficking protein particle complex subunit OS=Medicago truncatula OX=3880 GN=25492143 PE=3 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 6.439e-78
Identity = 112/115 (97.39%), Postives = 114/115 (99.13%), Query Frame = 0 
Query:    1 MQFFGGSEISPSPPPPTASGNNGHMLYVFNRNGICLLYREWNRPLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTSAEKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKSL 115
            MQFFGGSEISPSPP PTASGNNGHMLYVFNRNGICLLYREWNRPLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTSAEKGNLGVPQLPGQGCSFHSFRTNTYKLSFME+PSGIK+L
Sbjct:    1 MQFFGGSEISPSPPAPTASGNNGHMLYVFNRNGICLLYREWNRPLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTSAEKGNLGVPQLPGQGCSFHSFRTNTYKLSFMESPSGIKAL 115
[Close]
BLAST of Vfaba.Hedin2.R1.6g015640.2 vs. UniProtKB/TrEMBL
Match: tr|A0A392M1R0|A0A392M1R0_9FABA (Trafficking protein particle complex subunit (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0001989 PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 2.328e-77
Identity = 112/113 (99.12%), Postives = 112/113 (99.12%), Query Frame = 0 
Query:    1 MQFFGGSEISPSPPPPTASGNNGHMLYVFNRNGICLLYREWNRPLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTSAEKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIK 113
            MQFFGGSEISPSPP PTASGNNGHMLYVFNRNGICLLYREWNRPLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTSAEKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIK
Sbjct:    1 MQFFGGSEISPSPPAPTASGNNGHMLYVFNRNGICLLYREWNRPLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTSAEKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIK 113
[Close]
BLAST of Vfaba.Hedin2.R1.6g015640.2 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3PAP4|A0A2K3PAP4_TRIPR (Trafficking protein particle complex subunit OS=Trifolium pratense OX=57577 GN=L195_g008976 PE=3 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 6.755e-77
Identity = 112/113 (99.12%), Postives = 112/113 (99.12%), Query Frame = 0 
Query:    1 MQFFGGSEISPSPPPPTASGNNGHMLYVFNRNGICLLYREWNRPLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTSAEKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIK 113
            MQFFGGSEISPSPP PTASGNNGHMLYVFNRNGICLLYREWNRPLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTSAEKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIK
Sbjct:    1 MQFFGGSEISPSPPAPTASGNNGHMLYVFNRNGICLLYREWNRPLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTSAEKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIK 113
[Close]
BLAST of Vfaba.Hedin2.R1.6g015640.2 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2Z809|A0A1S2Z809_CICAR (Trafficking protein particle complex subunit OS=Cicer arietinum OX=3827 GN=LOC101489835 PE=3 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 7.913e-77
Identity = 111/115 (96.52%), Postives = 113/115 (98.26%), Query Frame = 0 
Query:    1 MQFFGGSEISPSPPPPTASGNNGHMLYVFNRNGICLLYREWNRPLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTSAEKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKSL 115
            MQFFGGSEISPSPP PTASGNNGHMLYVFNRNGICLLYREWNRPLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTS+EKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIK +
Sbjct:    1 MQFFGGSEISPSPPAPTASGNNGHMLYVFNRNGICLLYREWNRPLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTSSEKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKII 115
[Close]
BLAST of Vfaba.Hedin2.R1.6g015640.2 vs. UniProtKB/TrEMBL
Match: tr|B7FHC8|B7FHC8_MEDTR (Trafficking protein particle complex subunit OS=Medicago truncatula OX=3880 GN=25492143 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 8.359e-77
Identity = 111/115 (96.52%), Postives = 113/115 (98.26%), Query Frame = 0 
Query:    1 MQFFGGSEISPSPPPPTASGNNGHMLYVFNRNGICLLYREWNRPLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTSAEKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKSL 115
            MQFFGGSEISPSPP PTASGNNGHMLYVFNRNGICLLYREWNRPLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTSAEKGNLGVPQLPGQGCSFHSFRTNTYKLSFME+PSGIK +
Sbjct:    1 MQFFGGSEISPSPPAPTASGNNGHMLYVFNRNGICLLYREWNRPLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTSAEKGNLGVPQLPGQGCSFHSFRTNTYKLSFMESPSGIKII 115
[Close]
BLAST of Vfaba.Hedin2.R1.6g015640.2 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3LCE5|A0A2K3LCE5_TRIPR (Trafficking protein particle complex subunit (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g032156 PE=3 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 1.497e-76
Identity = 112/115 (97.39%), Postives = 112/115 (97.39%), Query Frame = 0 
Query:    1 MQFFGGSEISPSPPPPTASGNNGHMLYVFNRNGICLLYREWNRPLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTSAEKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKSL 115
            MQFFGGSEISPSPP PTASGNNGHMLYVFNRNGICLLYREWNRPLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTSAEKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPS IK L
Sbjct:    1 MQFFGGSEISPSPPAPTASGNNGHMLYVFNRNGICLLYREWNRPLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTSAEKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSXIKLL 115
[Close]
BLAST of Vfaba.Hedin2.R1.6g015640.2 vs. UniProtKB/TrEMBL
Match: tr|A0A2I4HAB0|A0A2I4HAB0_JUGRE (Trafficking protein particle complex subunit OS=Juglans regia OX=51240 GN=LOC109015020 PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 6.566e-75
Identity = 107/115 (93.04%), Postives = 111/115 (96.52%), Query Frame = 0 
Query:    1 MQFFGGSEISPSPPPPTASGNNGHMLYVFNRNGICLLYREWNRPLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTSAEKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKSL 115
            MQFFGGSEISPSPP PTASGNN HM+YVFNRNG+CLLYREWNRPLHTLN QQDHKLMFGLLFSLKSLTAKMDPTSAEKGNLGVPQLPGQGCSFHSFRTNTYKLSFME+PSGIK +
Sbjct:    1 MQFFGGSEISPSPPAPTASGNNAHMIYVFNRNGVCLLYREWNRPLHTLNQQQDHKLMFGLLFSLKSLTAKMDPTSAEKGNLGVPQLPGQGCSFHSFRTNTYKLSFMESPSGIKII 115
[Close]
BLAST of Vfaba.Hedin2.R1.6g015640.2 vs. UniProtKB/TrEMBL
Match: tr|A0A7J7H300|A0A7J7H300_CAMSI (Trafficking protein particle complex subunit OS=Camellia sinensis OX=4442 GN=HYC85_013297 PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 9.637e-75
Identity = 107/115 (93.04%), Postives = 111/115 (96.52%), Query Frame = 0 
Query:    1 MQFFGGSEISPSPPPPTASGNNGHMLYVFNRNGICLLYREWNRPLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTSAEKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKSL 115
            MQFFGGSEISPSPP PT SGNN HM+YVFNRNG+CLLYREWNRPLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTSAEKGNLGVPQLPGQGCSFHSFRTNTYKLSFME+PSGIK +
Sbjct:    1 MQFFGGSEISPSPPAPTVSGNNAHMMYVFNRNGVCLLYREWNRPLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTSAEKGNLGVPQLPGQGCSFHSFRTNTYKLSFMESPSGIKII 115
[Close]
BLAST of Vfaba.Hedin2.R1.6g015640.2 vs. UniProtKB/Swiss-Prot
Match: sp|Q2KMM2|TPPC1_RAT (Trafficking protein particle complex subunit 1 OS=Rattus norvegicus OX=10116 GN=Trappc1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.736e-18
Identity = 39/100 (39.00%), Postives = 61/100 (61.00%), Query Frame = 0 
Query:   24 HMLYVFNRNGICLLYREWNRPLHT-LNAQQDHKLMFGLLFSLKSLTAKMDPTSAEKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKSLPDAYSGI 122
            H LY+F+RNG+CL Y EW+R     +  ++++KLM+G+LFS++S  +KM P   + G             F SF+T+ YKL + ETP+GIK + +   G+
Sbjct:    4 HNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-------------FLSFQTSRYKLHYYETPTGIKVVMNTDLGV 90
[Close]
BLAST of Vfaba.Hedin2.R1.6g015640.2 vs. UniProtKB/Swiss-Prot
Match: sp|Q5NCF2|TPPC1_MOUSE (Trafficking protein particle complex subunit 1 OS=Mus musculus OX=10090 GN=Trappc1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.736e-18
Identity = 39/100 (39.00%), Postives = 61/100 (61.00%), Query Frame = 0 
Query:   24 HMLYVFNRNGICLLYREWNRPLHT-LNAQQDHKLMFGLLFSLKSLTAKMDPTSAEKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKSLPDAYSGI 122
            H LY+F+RNG+CL Y EW+R     +  ++++KLM+G+LFS++S  +KM P   + G             F SF+T+ YKL + ETP+GIK + +   G+
Sbjct:    4 HNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-------------FLSFQTSRYKLHYYETPTGIKVVMNTDLGV 90
[Close]
BLAST of Vfaba.Hedin2.R1.6g015640.2 vs. UniProtKB/Swiss-Prot
Match: sp|Q9Y5R8|TPPC1_HUMAN (Trafficking protein particle complex subunit 1 OS=Homo sapiens OX=9606 GN=TRAPPC1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.755e-18
Identity = 38/100 (38.00%), Postives = 61/100 (61.00%), Query Frame = 0 
Query:   24 HMLYVFNRNGICLLYREWNRPLHT-LNAQQDHKLMFGLLFSLKSLTAKMDPTSAEKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKSLPDAYSGI 122
            H LY+F+RNG+CL Y EW+R     +  ++++KLM+G+LFS++S  +KM P   + G             F +F+T+ YKL + ETP+GIK + +   G+
Sbjct:    4 HNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-------------FLAFQTSRYKLHYYETPTGIKVVMNTDLGV 90
[Close]
BLAST of Vfaba.Hedin2.R1.6g015640.2 vs. UniProtKB/Swiss-Prot
Match: sp|Q17QI1|TPPC1_BOVIN (Trafficking protein particle complex subunit 1 OS=Bos taurus OX=9913 GN=TRAPPC1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.755e-18
Identity = 38/100 (38.00%), Postives = 61/100 (61.00%), Query Frame = 0 
Query:   24 HMLYVFNRNGICLLYREWNRPLHT-LNAQQDHKLMFGLLFSLKSLTAKMDPTSAEKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKSLPDAYSGI 122
            H LY+F+RNG+CL Y EW+R     +  ++++KLM+G+LFS++S  +KM P   + G             F +F+T+ YKL + ETP+GIK + +   G+
Sbjct:    4 HNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-------------FLAFQTSRYKLHYYETPTGIKVVMNTDLGV 90
[Close]
BLAST of Vfaba.Hedin2.R1.6g015640.2 vs. UniProtKB/Swiss-Prot
Match: sp|Q557G3|TPPC1_DICDI (Trafficking protein particle complex subunit 1 OS=Dictyostelium discoideum OX=44689 GN=trappc1-1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.037e-15
Identity = 31/88 (35.23%), Postives = 49/88 (55.68%), Query Frame = 0 
Query:   26 LYVFNRNGICLLYREWNRPLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTSAEKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIK 113
            +Y+FN++G C+ Y +WN+   + N  +D KL+FG+L+SLK+      P   +               FH ++T+TYKL + ET S IK
Sbjct:    5 IYIFNKDGTCIYYEDWNKKKQSQNQSEDQKLLFGMLYSLKAFITSSSPKKIDDKT-----------GFHCYKTSTYKLHYYETLSCIK 81
[Close]
BLAST of Vfaba.Hedin2.R1.6g015640.2 vs. Araport11
Match: AT1G51160.3 (| SNARE-like superfamily protein | Chr1:18950057-18951560 FORWARD LENGTH=169 | 201606)

HSP 1 Score: 224.557 bits (571), Expect = 1.323e-76
Identity = 104/115 (90.43%), Postives = 110/115 (95.65%), Query Frame = 0 
Query:    1 MQFFGGSEISPSPPPPTASGNNGHMLYVFNRNGICLLYREWNRPLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTSAEKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKSL 115
            MQFFGGSEISPSPP PTASGNN HM+YVFNRNG+CLLY+EWNRPLHTLN QQDHKLMFGLLFSLKSLTAKMDP +A+KGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIK +
Sbjct:    1 MQFFGGSEISPSPPVPTASGNNAHMMYVFNRNGVCLLYKEWNRPLHTLNPQQDHKLMFGLLFSLKSLTAKMDPVNADKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKII 115
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BLAST of Vfaba.Hedin2.R1.6g015640.2 vs. Araport11
Match: AT1G51160.2 (| SNARE-like superfamily protein | Chr1:18950057-18951560 FORWARD LENGTH=169 | 201606)

HSP 1 Score: 224.557 bits (571), Expect = 1.323e-76
Identity = 104/115 (90.43%), Postives = 110/115 (95.65%), Query Frame = 0 
Query:    1 MQFFGGSEISPSPPPPTASGNNGHMLYVFNRNGICLLYREWNRPLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTSAEKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKSL 115
            MQFFGGSEISPSPP PTASGNN HM+YVFNRNG+CLLY+EWNRPLHTLN QQDHKLMFGLLFSLKSLTAKMDP +A+KGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIK +
Sbjct:    1 MQFFGGSEISPSPPVPTASGNNAHMMYVFNRNGVCLLYKEWNRPLHTLNPQQDHKLMFGLLFSLKSLTAKMDPVNADKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKII 115
[Close]
BLAST of Vfaba.Hedin2.R1.6g015640.2 vs. Araport11
Match: AT1G51160.1 (| SNARE-like superfamily protein | Chr1:18950057-18951560 FORWARD LENGTH=169 | 201606)

HSP 1 Score: 224.557 bits (571), Expect = 1.323e-76
Identity = 104/115 (90.43%), Postives = 110/115 (95.65%), Query Frame = 0 
Query:    1 MQFFGGSEISPSPPPPTASGNNGHMLYVFNRNGICLLYREWNRPLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTSAEKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKSL 115
            MQFFGGSEISPSPP PTASGNN HM+YVFNRNG+CLLY+EWNRPLHTLN QQDHKLMFGLLFSLKSLTAKMDP +A+KGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIK +
Sbjct:    1 MQFFGGSEISPSPPVPTASGNNAHMMYVFNRNGVCLLYKEWNRPLHTLNPQQDHKLMFGLLFSLKSLTAKMDPVNADKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKII 115
The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.6g015640.2 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A2Z6MQD0|A0A2Z6MQD0_TRISU1.201e-8298.35Trafficking protein particle complex subunit OS=Tr... [more]
tr|A0A2Z6MNE3|A0A2Z6MNE3_TRISU2.642e-8093.70Trafficking protein particle complex subunit OS=Tr... [more]
tr|A0A072UIV4|A0A072UIV4_MEDTR6.439e-7897.39Trafficking protein particle complex subunit OS=Me... [more]
tr|A0A392M1R0|A0A392M1R0_9FABA2.328e-7799.12Trafficking protein particle complex subunit (Frag... [more]
tr|A0A2K3PAP4|A0A2K3PAP4_TRIPR6.755e-7799.12Trafficking protein particle complex subunit OS=Tr... [more]
tr|A0A1S2Z809|A0A1S2Z809_CICAR7.913e-7796.52Trafficking protein particle complex subunit OS=Ci... [more]
tr|B7FHC8|B7FHC8_MEDTR8.359e-7796.52Trafficking protein particle complex subunit OS=Me... [more]
tr|A0A2K3LCE5|A0A2K3LCE5_TRIPR1.497e-7697.39Trafficking protein particle complex subunit (Frag... [more]
tr|A0A2I4HAB0|A0A2I4HAB0_JUGRE6.566e-7593.04Trafficking protein particle complex subunit OS=Ju... [more]
tr|A0A7J7H300|A0A7J7H300_CAMSI9.637e-7593.04Trafficking protein particle complex subunit OS=Ca... [more]
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BLAST of Vfaba.Hedin2.R1.6g015640.2 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q2KMM2|TPPC1_RAT2.736e-1839.00Trafficking protein particle complex subunit 1 OS=... [more]
sp|Q5NCF2|TPPC1_MOUSE2.736e-1839.00Trafficking protein particle complex subunit 1 OS=... [more]
sp|Q9Y5R8|TPPC1_HUMAN5.755e-1838.00Trafficking protein particle complex subunit 1 OS=... [more]
sp|Q17QI1|TPPC1_BOVIN5.755e-1838.00Trafficking protein particle complex subunit 1 OS=... [more]
sp|Q557G3|TPPC1_DICDI2.037e-1535.23Trafficking protein particle complex subunit 1 OS=... [more]
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BLAST of Vfaba.Hedin2.R1.6g015640.2 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11)
Total hits: 3
Match NameE-valueIdentityDescription
AT1G51160.31.323e-7690.43| SNARE-like superfamily protein | Chr1:18950057-1... [more]
AT1G51160.21.323e-7690.43| SNARE-like superfamily protein | Chr1:18950057-1... [more]
AT1G51160.11.323e-7690.43| SNARE-like superfamily protein | Chr1:18950057-1... [more]
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InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007233Trafficking protein particle complex subunitPFAMPF04099Sybindincoord: 24..113
e-value: 4.5E-23
score: 81.8
IPR007233Trafficking protein particle complex subunitPANTHERPTHR23249TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNITcoord: 24..113
NoneNo IPR availableGENE3D3.30.450.70coord: 24..115
e-value: 2.9E-22
score: 81.2
IPR011012Longin-like domain superfamilySUPERFAMILY64356SNARE-likecoord: 24..113

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vfaba.Hedin2.R1.6g015640.2_vfh_v1 ID=Vfaba.Hedin2.R1.6g015640.2_vfh_v1; Name=Vfaba.Hedin2.R1.6g015640.2; organism=Vicia faba; type=mRNA; length=375bp
ATGCAATTCTTTGGTGGTTCTGAGATTAGTCCGTCGCCGCCGCCGCCGAC
TGCTTCAGGAAACAATGGCCATATGCTGTATGTTTTCAACAGAAATGGTA
TATGCTTGCTTTATAGAGAATGGAATCGCCCCCTGCATACGTTGAATGCT
CAACAAGATCATAAGTTGATGTTTGGTCTGCTCTTCTCACTCAAGTCATT
AACTGCCAAGATGGATCCCACTAGTGCCGAGAAAGGGAACCTTGGTGTGC
CTCAGTTACCCGGCCAAGGTTGTTCGTTTCACAGTTTTCGTACTAATACA
TACAAACTTAGTTTCATGGAAACTCCTTCTGGAATAAAGTCGCTTCCTGA
TGCCTATTCTGGAATTTTGTGGTGA
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protein sequence of Vfaba.Hedin2.R1.6g015640.2_vfh_v1

>Vfaba.Hedin2.R1.6g015640.2_vfh_v1 ID=Vfaba.Hedin2.R1.6g015640.2_vfh_v1; Name=Vfaba.Hedin2.R1.6g015640.2_vfh_v1; organism=Vicia faba; type=polypeptide; length=124bp
MQFFGGSEISPSPPPPTASGNNGHMLYVFNRNGICLLYREWNRPLHTLNA
QQDHKLMFGLLFSLKSLTAKMDPTSAEKGNLGVPQLPGQGCSFHSFRTNT
YKLSFMETPSGIKSLPDAYSGILW
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mRNA from alignment at chr6:125985701..125986279+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vfaba.Hedin2.R1.6g015640.2_vfh_v1 ID=Vfaba.Hedin2.R1.6g015640.2_vfh_v1; Name=Vfaba.Hedin2.R1.6g015640.2; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr6:125985701..125986279+ (Vicia faba
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR007233TRAPPC
IPR011012Longin-like_dom_sf
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
Vocabulary: Cellular Component
TermDefinition
GO:0030008TRAPP complex