Vfaba.Hedin2.R1.6g027960.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Vfaba.Hedin2.R1.6g027960.1 vs. UniProtKB/TrEMBL
Match: tr|A0A396I598|A0A396I598_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr4g0029591 PE=4 SV=1) HSP 1 Score: 320.472 bits (820), Expect = 6.614e-108 Identity = 165/228 (72.37%), Postives = 179/228 (78.51%), Query Frame = 0 Query: 1 MDSSLPTMIPEKTKTKTKDYKSKMKQKRNQTPKIDSGSESQTQFRQNRAFGTAWNTNVNIPKKPVSDNIITKPKPTIPQRQPKQPIQATQVTIETATLTQPTDTKSPENVNLIKNKIGVTFSQ---------ENDSAE-PKTPVTSSRVRGKSKVQATPFYSAVNCSKCRFDRLETSSYWVGQIKLAETVGKHYVACGFFKLALKSQAEPIRNLKIELKRYLSRHGHL 218 MDS L +PEKT D K KMKQKRN+ K+ G E+QTQFRQNRAFGT WNTN NIPKKP+SDNI TKPKP +P +QPKQPI ATQV E TLTQP D KSPENV IKNK TF Q E+DSAE PKTP T+S RGKSKVQATPFYSAVNCSKCRFD+LETSSYW+GQIKLAE+VGKH+VA GFFKLALKSQAE IRNL+IELKRYLSRHGHL Sbjct: 1 MDSLL---LPEKT---NDDSKPKMKQKRNKATKMGMGRETQTQFRQNRAFGTPWNTNDNIPKKPISDNITTKPKPAVPHKQPKQPIPATQVPTEITTLTQPNDKKSPENVKPIKNKKSDTFPQKLAEKAMLKESDSAEEPKTPATTSHGRGKSKVQATPFYSAVNCSKCRFDKLETSSYWIGQIKLAESVGKHFVASGFFKLALKSQAESIRNLRIELKRYLSRHGHL 222
BLAST of Vfaba.Hedin2.R1.6g027960.1 vs. UniProtKB/TrEMBL
Match: tr|G7JPH3|G7JPH3_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=11405615 PE=4 SV=2) HSP 1 Score: 310.457 bits (794), Expect = 2.690e-104 Identity = 154/205 (75.12%), Postives = 167/205 (81.46%), Query Frame = 0 Query: 24 MKQKRNQTPKIDSGSESQTQFRQNRAFGTAWNTNVNIPKKPVSDNIITKPKPTIPQRQPKQPIQATQVTIETATLTQPTDTKSPENVNLIKNKIGVTFSQ---------ENDSAE-PKTPVTSSRVRGKSKVQATPFYSAVNCSKCRFDRLETSSYWVGQIKLAETVGKHYVACGFFKLALKSQAEPIRNLKIELKRYLSRHGHL 218 MKQKRN+ K+ G E+QTQFRQNRAFGT WNTN NIPKKP+SDNI TKPKP +P +QPKQPI ATQV E TLTQP D KSPENV IKNK TF Q E+DSAE PKTP T+S RGKSKVQATPFYSAVNCSKCRFD+LETSSYW+GQIKLAE+VGKH+VA GFFKLALKSQAE IRNL+IELKRYLSRHGHL Sbjct: 1 MKQKRNKATKMGMGRETQTQFRQNRAFGTPWNTNDNIPKKPISDNITTKPKPAVPHKQPKQPIPATQVPTEITTLTQPNDKKSPENVKPIKNKKSDTFPQKLAEKAMLKESDSAEEPKTPATTSHGRGKSKVQATPFYSAVNCSKCRFDKLETSSYWIGQIKLAESVGKHFVASGFFKLALKSQAESIRNLRIELKRYLSRHGHL 205
BLAST of Vfaba.Hedin2.R1.6g027960.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445HM70|A0A445HM70_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_033605 PE=4 SV=1) HSP 1 Score: 241.891 bits (616), Expect = 7.519e-77 Identity = 144/252 (57.14%), Postives = 168/252 (66.67%), Query Frame = 0 Query: 1 MDSSLPTMIPEKTKTKTKDYKSKMKQKRNQTPKIDSGSESQTQFRQNRAFGTAWNTNVNIPKKPVSDNIITKPKPTIPQRQPKQPIQATQVTIETATLTQPTDTKSPENVNLIKNKIGVTF------------SQENDSA-EPKTPV-TSSRVRGKSKVQATPFYSAVNCSKCRFDRLETSSYWVGQIKLAETVGKHYVACGFFKLALKSQAEPIRNLKIELKRYLSRHGHLYVEKEWKNVAARFGLLKDES 238 MDS L +++P K D K K+ QK NQ KI + FR NR FGTA NTN+ IP KPV D ITK K + QR+PK I TQ+ I+T + KS EN NL NK TF SQE SA EPKTPV +SS VR KS TPFYSA+NCSKCRFDRLETSSYWVGQIK+AE+VGKH+VA FF+LAL+SQAEPIRNL++ELKRYL RHG+L +KEW+ VAAR+GLLK ES Sbjct: 1 MDS-LLSILP----GKANDSKPKINQKTNQATKIGTAEAQSFGFRHNRVFGTARNTNI-IPGKPVWDKSITKTKIDVSQRKPKS-ISTTQLPIDTH------NKKSTENANLGLNKKSHTFPQQFAEKTSKNSSQEKGSASEPKTPVASSSHVRTKS---TTPFYSALNCSKCRFDRLETSSYWVGQIKMAESVGKHFVASEFFRLALESQAEPIRNLRMELKRYLLRHGYLSEQKEWREVAARYGLLKVES 236
BLAST of Vfaba.Hedin2.R1.6g027960.1 vs. UniProtKB/TrEMBL
Match: tr|K7LTG0|K7LTG0_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100782972 PE=4 SV=1) HSP 1 Score: 241.891 bits (616), Expect = 7.519e-77 Identity = 144/252 (57.14%), Postives = 168/252 (66.67%), Query Frame = 0 Query: 1 MDSSLPTMIPEKTKTKTKDYKSKMKQKRNQTPKIDSGSESQTQFRQNRAFGTAWNTNVNIPKKPVSDNIITKPKPTIPQRQPKQPIQATQVTIETATLTQPTDTKSPENVNLIKNKIGVTF------------SQENDSA-EPKTPV-TSSRVRGKSKVQATPFYSAVNCSKCRFDRLETSSYWVGQIKLAETVGKHYVACGFFKLALKSQAEPIRNLKIELKRYLSRHGHLYVEKEWKNVAARFGLLKDES 238 MDS L +++P K D K K+ QK NQ KI + FR NR FGTA NTN+ IP KPV D ITK K + QR+PK I TQ+ I+T + KS EN NL NK TF SQE SA EPKTPV +SS VR KS TPFYSA+NCSKCRFDRLETSSYWVGQIK+AE+VGKH+VA FF+LAL+SQAEPIRNL++ELKRYL RHG+L +KEW+ VAAR+GLLK ES Sbjct: 1 MDS-LLSILP----GKANDSKPKINQKTNQATKIGTAEAQSFGFRHNRVFGTARNTNI-IPGKPVWDKSITKTKIDVSQRKPKS-ISTTQLPIDTH------NKKSTENANLGLNKKSHTFPQQFAEKTSKNSSQEKGSASEPKTPVASSSHVRTKS---TTPFYSALNCSKCRFDRLETSSYWVGQIKMAESVGKHFVASEFFRLALESQAEPIRNLRMELKRYLLRHGYLSEQKEWREVAARYGLLKVES 236
BLAST of Vfaba.Hedin2.R1.6g027960.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0B2PDM9|A0A0B2PDM9_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_033605 PE=4 SV=1) HSP 1 Score: 240.35 bits (612), Expect = 2.444e-76 Identity = 141/245 (57.55%), Postives = 163/245 (66.53%), Query Frame = 0 Query: 8 MIPEKTKTKTKDYKSKMKQKRNQTPKIDSGSESQTQFRQNRAFGTAWNTNVNIPKKPVSDNIITKPKPTIPQRQPKQPIQATQVTIETATLTQPTDTKSPENVNLIKNKIGVTF------------SQENDSA-EPKTPV-TSSRVRGKSKVQATPFYSAVNCSKCRFDRLETSSYWVGQIKLAETVGKHYVACGFFKLALKSQAEPIRNLKIELKRYLSRHGHLYVEKEWKNVAARFGLLKDES 238 M+P K D K K+ QK NQ KI + FR NR FGTA NTN+ IP KPV D ITK K + QR+PK I TQ+ I+T + KS EN NL NK TF SQE SA EPKTPV +SS VR KS TPFYSA+NCSKCRFDRLETSSYWVGQIK+AE+VGKH+VA FF+LAL+SQAEPIRNL++ELKRYL RHG+L +KEW+ VAAR+GLLK ES Sbjct: 1 MVP----GKANDSKPKINQKTNQATKIGTAEAQSFGFRHNRVFGTARNTNI-IPGKPVWDKSITKTKIDVSQRKPKS-ISTTQLPIDTH------NKKSTENANLGLNKKSHTFPQQFAEKTSKNSSQEKGSASEPKTPVASSSHVRTKS---TTPFYSALNCSKCRFDRLETSSYWVGQIKMAESVGKHFVASEFFRLALESQAEPIRNLRMELKRYLLRHGYLSEQKEWREVAARYGLLKVES 230
BLAST of Vfaba.Hedin2.R1.6g027960.1 vs. UniProtKB/TrEMBL
Match: tr|K7LTG1|K7LTG1_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100782972 PE=4 SV=1) HSP 1 Score: 226.868 bits (577), Expect = 3.301e-71 Identity = 129/209 (61.72%), Postives = 148/209 (70.81%), Query Frame = 0 Query: 44 FRQNRAFGTAWNTNVNIPKKPVSDNIITKPKPTIPQRQPKQPIQATQVTIETATLTQPTDTKSPENVNLIKNKIGVTF------------SQENDSA-EPKTPV-TSSRVRGKSKVQATPFYSAVNCSKCRFDRLETSSYWVGQIKLAETVGKHYVACGFFKLALKSQAEPIRNLKIELKRYLSRHGHLYVEKEWKNVAARFGLLKDES 238 FR NR FGTA NTN+ IP KPV D ITK K + QR+PK I TQ+ I+T + KS EN NL NK TF SQE SA EPKTPV +SS VR KS TPFYSA+NCSKCRFDRLETSSYWVGQIK+AE+VGKH+VA FF+LAL+SQAEPIRNL++ELKRYL RHG+L +KEW+ VAAR+GLLK ES Sbjct: 16 FRHNRVFGTARNTNI-IPGKPVWDKSITKTKIDVSQRKPKS-ISTTQLPIDTH------NKKSTENANLGLNKKSHTFPQQFAEKTSKNSSQEKGSASEPKTPVASSSHVRTKS---TTPFYSALNCSKCRFDRLETSSYWVGQIKMAESVGKHFVASEFFRLALESQAEPIRNLRMELKRYLLRHGYLSEQKEWREVAARYGLLKVES 213
BLAST of Vfaba.Hedin2.R1.6g027960.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445I1X4|A0A445I1X4_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_029986 PE=4 SV=1) HSP 1 Score: 222.631 bits (566), Expect = 2.458e-69 Identity = 139/248 (56.05%), Postives = 160/248 (64.52%), Query Frame = 0 Query: 1 MDSSLPTMIPEKTKTKTKDYKSKMKQKRNQTPKIDSGSESQT-QFRQNRAFGTAWNTNVNIPKKPVSDNIITKPKPTIPQRQPKQPIQATQVTIETATLTQPTDTKSPENVNLIKNKIGVTF------------SQENDSAE-PKTPVTSS-RVRGKSKVQATPFYSAVNCSKCRFDRLETSSYWVGQIKLAETVGKHYVACGFFKLALKSQAEPIRNLKIELKRYLSRHGHLYVEKEWKNVAARFGL 233 MDS L T +P K D K K+ QK NQ KI +G Q+ FRQNR FGT +TN+ I +PV D ITK K + QR+PK I TQ I+T D S ENVNL K V F SQE SA PKTPV SS RVR KS +TPFYSA+NCSKC FDRLETSSYWVGQIK+AE+VGKH+VA FF+LAL+S AEPIRNL IELKRYL RHG+L +KEW+ VAAR+GL Sbjct: 1 MDS-LLTPLP----GKANDSKPKINQKTNQATKIGTGEAHQSFSFRQNRVFGTTRSTNI-IQGRPVWDKSITKTKIVVAQRKPKS-ISTTQAPIDTH------DKTSTENVNLGLKK-SVAFPQQLAEKTTKNSSQEKVSASVPKTPVASSFRVRSKS---STPFYSALNCSKCHFDRLETSSYWVGQIKMAESVGKHFVASEFFRLALESHAEPIRNLGIELKRYLLRHGYLSEQKEWREVAARYGL 231
BLAST of Vfaba.Hedin2.R1.6g027960.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6A5NPY5|A0A6A5NPY5_LUPAL (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00028768 PE=4 SV=1) HSP 1 Score: 213.001 bits (541), Expect = 1.798e-65 Identity = 132/254 (51.97%), Postives = 160/254 (62.99%), Query Frame = 0 Query: 1 MDSSLPTMIPEKTKTKTKDYKSKMKQKRNQTPKIDSGSESQTQFRQNRAFGTAWNTNVNIPKKPVSDNIITKPKPTIPQRQPKQPIQATQVTIETAT-LTQPTDTKSPENVNLIKNKIGVTFSQE-------------NDS--AEPKTPVTSSRVRGKSKVQATPFYSAVNCSKCRFDRLETSSYWVGQIKLAETVGKHYVACGFFKLALKSQAEPIRNLKIELKRYLSRHGHLYVEKEWKNVAARFGLLKDES 238 MD LPT + + K K+ + N KI +G E Q RQNR FGTA NTN IP K +SD ITK K +P R+PK I+ T+ +T+T +T TD KS E+VN NK TF Q NDS AEPKTPVT+ KS+V ATPFYSA +CSKCRFD+ ETS YWVGQIK+AE+VGKH VAC FF+LAL+SQAEPIR L++ELKRYL RH +L +EW+ V A +GL K ES Sbjct: 1 MDPPLPTPL----SLNGNNSKPKINPRVNLAAKIGTG-EPQ---RQNRVFGTARNTN--IPAKYMSDMTITKTKVVVPHRKPKS-IRTTKPPFDTSTKVTDTTDIKSLEDVNHRINKKSDTFPQGVVEKPISKNSQLVNDSSNAEPKTPVTAM----KSEVAATPFYSAAHCSKCRFDKFETSYYWVGQIKMAESVGKHVVACAFFRLALESQAEPIRELRMELKRYLLRHEYLSEVQEWREVGASYGLFKVES 239
BLAST of Vfaba.Hedin2.R1.6g027960.1 vs. UniProtKB/TrEMBL
Match: tr|A0A4P1R9L0|A0A4P1R9L0_LUPAN (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_23582 PE=4 SV=1) HSP 1 Score: 198.364 bits (503), Expect = 1.718e-59 Identity = 119/231 (51.52%), Postives = 143/231 (61.90%), Query Frame = 0 Query: 29 NQTPKIDS------GSESQTQFRQNRAFGTAWNTNVNIPKKPVSDNIITKPKPTIPQRQPKQPIQATQVTIETATLTQPTDTKSPENVNLIKNKIGVTFSQ---------------ENDSAEPKTPVTSSRVRGKSKVQATPFYSAVNCSKCRFDRLETSSYWVGQIKLAETVGKHYVACGFFKLALKSQAEPIRNLKIELKRYLSRHGHLYVEKEWKNVAARFGLLKDES 238 N PKI+S E Q RQNR FGT NTN IP K +SD +TK K +P R+PK I +T+ +T+T KSPENVN NK TF Q E+ S EPKTPV + KS+V TPFYSA +CSKCRFD+ ETS YWVGQIK+AE+VGKH VAC FFKLA +SQAEPIR L++ELKRYL RH +L +EW+ V A++GLL ES Sbjct: 42 NSKPKINSRVNIAVTGEPQ---RQNRVFGTTRNTN--IPAKYMSDMTLTKTKVIVPHRKPKS-ITSTKPPFDTST------KKSPENVNHRINKKSDTFPQGVVEKTVSKNFKLQKESCSGEPKTPVIRAM---KSEVVVTPFYSAAHCSKCRFDKFETSYYWVGQIKMAESVGKHRVACAFFKLAFESQAEPIRELRMELKRYLLRHEYLSELQEWREVGAKYGLLNVES 257
BLAST of Vfaba.Hedin2.R1.6g027960.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1U7WSB5|A0A1U7WSB5_NICSY (uncharacterized protein LOC104227115 isoform X1 OS=Nicotiana sylvestris OX=4096 GN=LOC104227115 PE=4 SV=1) HSP 1 Score: 193.356 bits (490), Expect = 3.443e-57 Identity = 112/226 (49.56%), Postives = 139/226 (61.50%), Query Frame = 0 Query: 20 YKSKMKQKRNQTPKIDSGSESQTQFRQNRAFGTAWNTNVNIPKKPVSDNIITKPKPTIPQRQPKQPIQATQVTIETATLTQPTDTKSPENVNLIKNKIGVTFSQENDSAEPKTPVTSSRVRGKSKVQ-ATPFYSAVNCSKCRFDRLETSSYWVGQIKLAETVGKHYVACGFFKLALKSQAEPIRNLKIELKRYLSRHGHLYVEKEWKNVAARFGLLKDESFTSEWN 244 KS+ K+ ++ PK S S RQNR FGT N NV P K VS + K +PQ+ K P + +T A T KS E + K V F + D AEP++PV S K ++ +TPFYSAVNCSKCRFDRLETSSYW+ QIKLAETVGKH+V+ FF+LAL S+AEP RN+++ELKRYL RH HL KEWK V +G+LKDE +SE N Sbjct: 17 LKSRFKKNISRAPKNQSKEPSIP--RQNRVFGTVRNPNV--PTKTVSKKPVAKASSGVPQKPCKSPKKTQSLTDSAAKPVTETAKKSTEENRVRSRKKSVCFQENRDVAEPQSPVKKSPNLVKPRISGSTPFYSAVNCSKCRFDRLETSSYWLSQIKLAETVGKHFVSAAFFQLALDSKAEPFRNIRLELKRYLRRHKHLSEGKEWKEVCFSYGILKDEG-SSEDN 237
BLAST of Vfaba.Hedin2.R1.6g027960.1 vs. Araport11
Match: AT5G62550.1 (| microtubule-associated futsch-like protein | Chr5:25105839-25107875 REVERSE LENGTH=487 | 201606) HSP 1 Score: 68.9366 bits (167), Expect = 3.357e-13 Identity = 33/88 (37.50%), Postives = 50/88 (56.82%), Query Frame = 0 Query: 148 TPFYSAVNCSKCR--FDRLETSSYWVGQIKLAETVGKHYVACGFFKLALKSQAEPIRNLKIELKRYLSRHGHLYVEKEWKNVAARFGL 233 TP S + S R + L +S+YW+ IKLAE+V KH ++ GFFKLAL + EP+ +K ELK Y R+ + K ++ + + Sbjct: 124 TPVSSNLRSSVTRKKVEDLSSSTYWLTHIKLAESVAKHSISLGFFKLALHAGCEPLDKMKEELKLYARRNNMDGLADAMKELSELYNI 211 The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.6g027960.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL) Total hits: 10
BLAST of Vfaba.Hedin2.R1.6g027960.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot) Total hits: 0
BLAST of Vfaba.Hedin2.R1.6g027960.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11) Total hits: 1
InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vfaba.Hedin2.R1.6g027960.1_vfh_v1 ID=Vfaba.Hedin2.R1.6g027960.1_vfh_v1; Name=Vfaba.Hedin2.R1.6g027960.1; organism=Vicia faba; type=mRNA; length=744bpback to top protein sequence of Vfaba.Hedin2.R1.6g027960.1_vfh_v1 >Vfaba.Hedin2.R1.6g027960.1_vfh_v1 ID=Vfaba.Hedin2.R1.6g027960.1_vfh_v1; Name=Vfaba.Hedin2.R1.6g027960.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=247bpback to top mRNA from alignment at chr6:218918064..218919439+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>Vfaba.Hedin2.R1.6g027960.1_vfh_v1 ID=Vfaba.Hedin2.R1.6g027960.1_vfh_v1; Name=Vfaba.Hedin2.R1.6g027960.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr6:218918064..218919439+ (Vicia fababack to top |