Vfaba.Hedin2.R1.6g120280.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Vfaba.Hedin2.R1.6g120280.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6NJG4|A0A2Z6NJG4_TRISU (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_58100 PE=4 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 4.033e-54 Identity = 98/134 (73.13%), Postives = 111/134 (82.84%), Query Frame = 0 Query: 1 MSTPILLQ---PPPLEVTQQAYTTHSGHGSMGPVIAVLAVITVLGIIAGMIGRLCSGGRVMGYGEYDIESWIQTKCSSCVGSRV---APPPPPPVNEPDA-------IQDSQEIKEDQHSQQESRQSSLGHNSS 121 MSTP++ Q PPP+EVTQQAYTTHSGHGS+GPVIAVLAVITVLGIIAGMIGRLCSG RVMGYGEYDIESW++TKCSSCVG R+ PPPPPP NE DA + DSQEIKED+ S+Q+SRQ+SL +SS Sbjct: 1 MSTPMVQQQQLPPPIEVTQQAYTTHSGHGSVGPVIAVLAVITVLGIIAGMIGRLCSGRRVMGYGEYDIESWVETKCSSCVGGRIVPPVPPPPPPANEADAVDDSPPVVDDSQEIKEDEQSRQQSRQNSLDRSSS 134
BLAST of Vfaba.Hedin2.R1.6g120280.1 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6L3S4|A0A4D6L3S4_VIGUN (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG2g3504 PE=4 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 9.609e-43 Identity = 75/117 (64.10%), Postives = 91/117 (77.78%), Query Frame = 0 Query: 1 MSTPILLQPPPLEVTQQAYTTHSGHGSMGPVIAVLAVITVLGIIAGMIGRLCSGGRVMGYGEYDIESWIQTKCSSCVGSRVA-------PPPPPPVNEPDAIQDSQEIKEDQHSQQE 110 MSTP + QPP +E+TQQAYTTHS HG++GPVIAVLAVITVLG+IAGMIGRLCSG RVMG+GEYD+E+WI+TKCSSCV R+A PP P + + +Q QEIK +QH +Q Sbjct: 1 MSTPFVQQPPSIEITQQAYTTHSDHGTVGPVIAVLAVITVLGVIAGMIGRLCSGRRVMGHGEYDVETWIETKCSSCVDGRIAPPPPPPPLPPEPAIQDLQPVQAPQEIKVEQHPRQN 117
BLAST of Vfaba.Hedin2.R1.6g120280.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445LNG6|A0A445LNG6_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_003831 PE=4 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 1.831e-42 Identity = 66/82 (80.49%), Postives = 77/82 (93.90%), Query Frame = 0 Query: 1 MSTPILLQPPPLEVTQQAYTTHSGHGSMGPVIAVLAVITVLGIIAGMIGRLCSGGRVMGYGEYDIESWIQTKCSSCVGSRVA 82 MSTP + QPPP+EVTQQAYTTHSGHGS+GPVIAVLAVITVLG+IAGMIGRLCSG RVMG+GE+D+E+W++TKCSSCV R+A Sbjct: 1 MSTPFVQQPPPIEVTQQAYTTHSGHGSVGPVIAVLAVITVLGVIAGMIGRLCSGRRVMGHGEFDVETWVETKCSSCVDGRIA 82
BLAST of Vfaba.Hedin2.R1.6g120280.1 vs. UniProtKB/TrEMBL
Match: tr|I1JEX1|I1JEX1_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100804641 PE=4 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 1.831e-42 Identity = 66/82 (80.49%), Postives = 77/82 (93.90%), Query Frame = 0 Query: 1 MSTPILLQPPPLEVTQQAYTTHSGHGSMGPVIAVLAVITVLGIIAGMIGRLCSGGRVMGYGEYDIESWIQTKCSSCVGSRVA 82 MSTP + QPPP+EVTQQAYTTHSGHGS+GPVIAVLAVITVLG+IAGMIGRLCSG RVMG+GE+D+E+W++TKCSSCV R+A Sbjct: 1 MSTPFVQQPPPIEVTQQAYTTHSGHGSVGPVIAVLAVITVLGVIAGMIGRLCSGRRVMGHGEFDVETWVETKCSSCVDGRIA 82
BLAST of Vfaba.Hedin2.R1.6g120280.1 vs. UniProtKB/TrEMBL
Match: tr|V7CGP5|V7CGP5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_003G294100g PE=4 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 2.719e-42 Identity = 76/116 (65.52%), Postives = 93/116 (80.17%), Query Frame = 0 Query: 1 MSTPILLQPPPLEVTQQAYTTHSGHGSMGPVIAVLAVITVLGIIAGMIGRLCSGGRVMGYGEYDIESWIQTKCSSCVGSRVA-------PPPPPPVNEPDAIQDSQEIKEDQHSQQ 109 MSTP + QPP +E++QQAY THS HGS+GPVIAVLAVITVLG+IAGMIGRLCSG RVMG+GEYD+E+WI+TKCSSCV R+A PP PP+++ +Q QEIKE+QH +Q Sbjct: 1 MSTPFVQQPPSIEISQQAYRTHSDHGSVGPVIAVLAVITVLGVIAGMIGRLCSGRRVMGHGEYDVETWIETKCSSCVDGRIAPPPPPPSLPPQPPIHDLPPVQAPQEIKEEQHPRQ 116
BLAST of Vfaba.Hedin2.R1.6g120280.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3R3H4|A0A0S3R3H4_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.01G278300 PE=4 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 2.968e-42 Identity = 75/117 (64.10%), Postives = 93/117 (79.49%), Query Frame = 0 Query: 1 MSTPILLQPPPLEVTQQAYTTHSGHGSMGPVIAVLAVITVLGIIAGMIGRLCSGGRVMGYGEYDIESWIQTKCSSCVGSRVAPPPPPP-------VNEPDAIQDSQEIKEDQHSQQE 110 MSTP + QPP +E+TQQAYTTH HGS+GPVIAVLAVITVLG+IAGMIGRLCSG R+MG+GE+D+E+WI+TKCSSCV R+APPP PP + + ++Q QEIK +QH +Q Sbjct: 1 MSTPFVQQPPSIEITQQAYTTHLDHGSVGPVIAVLAVITVLGVIAGMIGRLCSGRRIMGHGEFDVETWIETKCSSCVDGRIAPPPLPPPLPPEPVIQDLSSVQAPQEIKVEQHPRQN 117
BLAST of Vfaba.Hedin2.R1.6g120280.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9VAR5|A0A0L9VAR5_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan09g075200 PE=4 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 2.968e-42 Identity = 75/117 (64.10%), Postives = 93/117 (79.49%), Query Frame = 0 Query: 1 MSTPILLQPPPLEVTQQAYTTHSGHGSMGPVIAVLAVITVLGIIAGMIGRLCSGGRVMGYGEYDIESWIQTKCSSCVGSRVAPPPPPP-------VNEPDAIQDSQEIKEDQHSQQE 110 MSTP + QPP +E+TQQAYTTH HGS+GPVIAVLAVITVLG+IAGMIGRLCSG R+MG+GE+D+E+WI+TKCSSCV R+APPP PP + + ++Q QEIK +QH +Q Sbjct: 1 MSTPFVQQPPSIEITQQAYTTHLDHGSVGPVIAVLAVITVLGVIAGMIGRLCSGRRIMGHGEFDVETWIETKCSSCVDGRIAPPPLPPPLPPEPVIQDLSSVQAPQEIKVEQHPRQN 117
BLAST of Vfaba.Hedin2.R1.6g120280.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3UQB3|A0A1S3UQB3_VIGRR (uncharacterized protein LOC106767697 OS=Vigna radiata var. radiata OX=3916 GN=LOC106767697 PE=4 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 7.445e-42 Identity = 74/117 (63.25%), Postives = 93/117 (79.49%), Query Frame = 0 Query: 1 MSTPILLQPPPLEVTQQAYTTHSGHGSMGPVIAVLAVITVLGIIAGMIGRLCSGGRVMGYGEYDIESWIQTKCSSCVGSRVAPPPPPP-------VNEPDAIQDSQEIKEDQHSQQE 110 M+TP + QPP +E+TQQAYTTH HGS+GPVIAVLAVITVLG+IAGMIGRLCSG R+MG+GE+D+E+WI+TKCSSCV R+APPP PP + + ++Q QEIK +QH +Q Sbjct: 1 MATPFVQQPPSIEITQQAYTTHLDHGSVGPVIAVLAVITVLGVIAGMIGRLCSGRRIMGHGEFDVETWIETKCSSCVDGRIAPPPLPPPLPPEPVIQDLSSVQAPQEIKVEQHPRQN 117
BLAST of Vfaba.Hedin2.R1.6g120280.1 vs. UniProtKB/TrEMBL
Match: tr|G7JMH7|G7JMH7_MEDTR (Transmembrane protein, putative OS=Medicago truncatula OX=3880 GN=11446341 PE=4 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 8.363e-42 Identity = 77/98 (78.57%), Postives = 85/98 (86.73%), Query Frame = 0 Query: 9 PPPLEVTQQAYTTHSGHGSMGPVIAVLAVITVLGIIAGMIGRLCSGGRVMGYGEYDIESWIQTKCSSCVGSRVA--PPPPPPVNEPDAIQDSQEIKED 104 PPP+EVTQQAYTT SGHGS+GPVIAVLAVITVLGIIAGMIGRLCSG RVMGYGEYDIESW++TKCSSCVG R+ PPP PPVNEP+A ++ ED Sbjct: 10 PPPIEVTQQAYTTQSGHGSVGPVIAVLAVITVLGIIAGMIGRLCSGRRVMGYGEYDIESWVETKCSSCVGGRIVPPPPPRPPVNEPEAAAENSPAVED 107
BLAST of Vfaba.Hedin2.R1.6g120280.1 vs. UniProtKB/TrEMBL
Match: tr|I1KLX3|I1KLX3_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100797311 PE=4 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 1.348e-41 Identity = 66/82 (80.49%), Postives = 76/82 (92.68%), Query Frame = 0 Query: 1 MSTPILLQPPPLEVTQQAYTTHSGHGSMGPVIAVLAVITVLGIIAGMIGRLCSGGRVMGYGEYDIESWIQTKCSSCVGSRVA 82 MSTP + QPPPLEVTQQ+YTTH GHGS+GPVIAVLAVITVLG+IAGMIGRLCSG RVMG+GEYD+E+W++TKCSSCV R+A Sbjct: 1 MSTPFVQQPPPLEVTQQSYTTHLGHGSVGPVIAVLAVITVLGVIAGMIGRLCSGRRVMGHGEYDVETWVETKCSSCVDGRIA 82
BLAST of Vfaba.Hedin2.R1.6g120280.1 vs. Araport11
Match: AT2G26520.1 (| transmembrane protein | Chr2:11280280-11280717 FORWARD LENGTH=145 | 201606) HSP 1 Score: 79.7221 bits (195), Expect = 6.222e-20 Identity = 34/82 (41.46%), Postives = 54/82 (65.85%), Query Frame = 0 Query: 2 STPILLQPPPL--EVTQQAYTTHSGHGSMGPVIAVLAVITVLGIIAGMIGRLCSGGRVMGYGEYDIESWIQTKCSSCVGSRV 81 S P+ QPPP + + +G+ ++GP IAV V+TVL ++A +IGRLCSG ++GYG+YD+E W +++C SC+ + Sbjct: 3 SMPLYWQPPPATEVSQDSSSVSSAGNSTIGPFIAVFIVVTVLCVLASVIGRLCSGKTILGYGDYDMERWAESRCGSCIDGHI 84
BLAST of Vfaba.Hedin2.R1.6g120280.1 vs. Araport11
Match: AT3G57500.1 (| fission regulator-like protein | Chr3:21281980-21282351 FORWARD LENGTH=123 | 201606) HSP 1 Score: 65.4698 bits (158), Expect = 1.246e-14 Identity = 30/77 (38.96%), Postives = 48/77 (62.34%), Query Frame = 0 Query: 3 TPILLQPPPLEVTQQAYTTHSGHGSMGPVIAVLAVITVLGIIAGMIGRLCSGGRVMGYGEYDIESWIQTKCSSCVGS 79 T I + PP +Q + +S H S+ ++ VLAVIT+L ++AG+ RLC G + G++DIE W++ KC SC+ + Sbjct: 17 TTIYIDPP----SQDQPSHNSDHRSIETLVVVLAVITILSVLAGVFARLCGGRHLSHGGDHDIEGWVERKCRSCIDA 89 The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.6g120280.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL) Total hits: 10
BLAST of Vfaba.Hedin2.R1.6g120280.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot) Total hits: 0
BLAST of Vfaba.Hedin2.R1.6g120280.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11) Total hits: 2
InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vfaba.Hedin2.R1.6g120280.1_vfh_v1 ID=Vfaba.Hedin2.R1.6g120280.1_vfh_v1; Name=Vfaba.Hedin2.R1.6g120280.1; organism=Vicia faba; type=mRNA; length=366bpback to top protein sequence of Vfaba.Hedin2.R1.6g120280.1_vfh_v1 >Vfaba.Hedin2.R1.6g120280.1_vfh_v1 ID=Vfaba.Hedin2.R1.6g120280.1_vfh_v1; Name=Vfaba.Hedin2.R1.6g120280.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=121bpback to top mRNA from alignment at chr6:986984448..986984813+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>Vfaba.Hedin2.R1.6g120280.1_vfh_v1 ID=Vfaba.Hedin2.R1.6g120280.1_vfh_v1; Name=Vfaba.Hedin2.R1.6g120280.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr6:986984448..986984813+ (Vicia fababack to top |