Vfaba.Tiffany.R1.1g104240.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Vfaba.Tiffany.R1.1g104240.1 vs. UniProtKB/TrEMBL
Match: tr|A0A392QLX4|A0A392QLX4_9FABA (Ubiquitin-specific protease family C19 protein (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 8.356e-15 Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 0 Query: 1 MSSAAMPYTGGDIKRSGELGKMFDIPMDGSKSRKSGNLSAA--KNGQFLKVS 50 MSS AMPYTGGDIK+SGELGKMFDIPMDGSKSRKSG L+ A + G F V+ Sbjct: 30 MSSVAMPYTGGDIKKSGELGKMFDIPMDGSKSRKSGPLNNAPSRTGSFGGVA 81
BLAST of Vfaba.Tiffany.R1.1g104240.1 vs. UniProtKB/TrEMBL
Match: tr|A0A392NFF7|A0A392NFF7_9FABA (Ubiquitin-specific protease family C19 protein (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0018872 PE=4 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.345e-14 Identity = 34/43 (79.07%), Postives = 40/43 (93.02%), Query Frame = 0 Query: 1 MSSAAMPYTGGDIKRSGELGKMFDIPMDGSKSRKSGNLSAAKN 43 M+SAAMPYTGGDIK+SGELGKMFDIP+DGSKSRKSG ++ A + Sbjct: 30 MTSAAMPYTGGDIKKSGELGKMFDIPVDGSKSRKSGPITGAPS 72
BLAST of Vfaba.Tiffany.R1.1g104240.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6P5WJP1|A0A6P5WJP1_DURZI (uncharacterized membrane protein At1g16860-like OS=Durio zibethinus OX=66656 GN=LOC111275329 PE=4 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 5.455e-14 Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = 0 Query: 1 MSSAAMPYTGGDIKRSGELGKMFDIPMDGSKSRKSGNLSAA--KNGQF 46 MSSAAMPYTGGDIK+SGELGKMFDIPMDGSKSRKSG +S A + G F Sbjct: 30 MSSAAMPYTGGDIKKSGELGKMFDIPMDGSKSRKSGPISGAPSRTGSF 77
BLAST of Vfaba.Tiffany.R1.1g104240.1 vs. UniProtKB/TrEMBL
Match: tr|I1KVT4|I1KVT4_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100820095 PE=4 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 8.763e-14 Identity = 39/48 (81.25%), Postives = 41/48 (85.42%), Query Frame = 0 Query: 1 MSSAAMPYTGGDIKRSGELGKMFDIPMDGSKSRKSGNLSAA--KNGQF 46 MSS AMPYTGGDIKRSGELGKMFDIPMDGSKSRKSG +S A + G F Sbjct: 30 MSSVAMPYTGGDIKRSGELGKMFDIPMDGSKSRKSGPISNAPSRTGSF 77
BLAST of Vfaba.Tiffany.R1.1g104240.1 vs. UniProtKB/TrEMBL
Match: tr|A0A7N2LTR0|A0A7N2LTR0_QUELO (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 8.797e-14 Identity = 38/48 (79.17%), Postives = 42/48 (87.50%), Query Frame = 0 Query: 1 MSSAAMPYTGGDIKRSGELGKMFDIPMDGSKSRKSGNLSAA--KNGQF 46 MSS AMPYTGGDIK+SGELGKMFDIPMDGSKSRKSG L++A + G F Sbjct: 30 MSSTAMPYTGGDIKKSGELGKMFDIPMDGSKSRKSGQLTSAPSRTGSF 77
BLAST of Vfaba.Tiffany.R1.1g104240.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445JIQ3|A0A445JIQ3_GLYSO (Putative membrane protein isoform A OS=Glycine soja OX=3848 GN=D0Y65_021309 PE=4 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 9.110e-14 Identity = 39/48 (81.25%), Postives = 41/48 (85.42%), Query Frame = 0 Query: 1 MSSAAMPYTGGDIKRSGELGKMFDIPMDGSKSRKSGNLSAA--KNGQF 46 MSS AMPYTGGDIKRSGELGKMFDIPMDGSKSRKSG +S A + G F Sbjct: 30 MSSVAMPYTGGDIKRSGELGKMFDIPMDGSKSRKSGPISNAPSRTGSF 77
BLAST of Vfaba.Tiffany.R1.1g104240.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2N9HZK2|A0A2N9HZK2_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45075 PE=4 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 1.212e-13 Identity = 36/43 (83.72%), Postives = 40/43 (93.02%), Query Frame = 0 Query: 1 MSSAAMPYTGGDIKRSGELGKMFDIPMDGSKSRKSGNLSAAKN 43 MSS AMPYTGGDIK+SGELGKMFDIPMDGSKSRKSG L++A + Sbjct: 30 MSSTAMPYTGGDIKKSGELGKMFDIPMDGSKSRKSGQLTSAPS 72
BLAST of Vfaba.Tiffany.R1.1g104240.1 vs. UniProtKB/TrEMBL
Match: tr|A0A022REE1|A0A022REE1_ERYGU (Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a005624mg PE=4 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 1.405e-13 Identity = 45/80 (56.25%), Postives = 53/80 (66.25%), Query Frame = 0 Query: 1 MSSAAMPYTGGDIKRSGELGKMFDIPMDGSKSRKSGNLSAAKNGQFLKVSRQPLFSKVF--AVEDSDLLNNYWCGSASIG 78 MSS AMPYTGGDIK+SGELGKMFDIPMDGS+SRKSG ++ A P+ + F A S LN+ GSAS+G Sbjct: 30 MSSVAMPYTGGDIKKSGELGKMFDIPMDGSRSRKSGPITNA-----------PIRTGSFGGAASHSGQLNSASRGSASVG 98
BLAST of Vfaba.Tiffany.R1.1g104240.1 vs. UniProtKB/TrEMBL
Match: tr|C6T0N4|C6T0N4_SOYBN (Uncharacterized protein (Fragment) OS=Glycine max OX=3847 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.551e-13 Identity = 34/48 (70.83%), Postives = 41/48 (85.42%), Query Frame = 0 Query: 1 MSSAAMPYTGGDIKRSGELGKMFDIPMDGSKSRKSGNLSAA--KNGQF 46 M+S A+PYTGGDIK+SGELGKMFDIP+DGSKSRKSG ++ A + G F Sbjct: 30 MTSTAVPYTGGDIKKSGELGKMFDIPVDGSKSRKSGPITGAPSRTGSF 77
BLAST of Vfaba.Tiffany.R1.1g104240.1 vs. UniProtKB/TrEMBL
Match: tr|A0A5B6W886|A0A5B6W886_9ROSI (Putative membrane protein OS=Gossypium australe OX=47621 GN=EPI10_011801 PE=4 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 1.579e-13 Identity = 38/48 (79.17%), Postives = 42/48 (87.50%), Query Frame = 0 Query: 1 MSSAAMPYTGGDIKRSGELGKMFDIPMDGSKSRKSGNLSAA--KNGQF 46 MSS AMPYTGGDIK+SGELGKMFDIPMDGSKSRKSG +S+A + G F Sbjct: 50 MSSVAMPYTGGDIKKSGELGKMFDIPMDGSKSRKSGPISSAPSRTGSF 97
BLAST of Vfaba.Tiffany.R1.1g104240.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9FZ45|Y1686_ARATH (Uncharacterized membrane protein At1g16860 OS=Arabidopsis thaliana OX=3702 GN=At1g16860 PE=1 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.599e-14 Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = 0 Query: 1 MSSAAMPYTGGDIKRSGELGKMFDIPMDGSKSRKSGNLSAA--KNGQF 46 MS+ AMPYTGGDIKRSGELGKMFDIP DG+KSRKSG + A ++G F Sbjct: 30 MSAVAMPYTGGDIKRSGELGKMFDIPADGTKSRKSGPIPGAPSRSGSF 77
BLAST of Vfaba.Tiffany.R1.1g104240.1 vs. Araport11
Match: AT1G16860.1 (| Ubiquitin-specific protease family C19-related protein | Chr1:5768280-5770183 FORWARD LENGTH=474 | 201606) HSP 1 Score: 73.559 bits (179), Expect = 1.636e-15 Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = 0 Query: 1 MSSAAMPYTGGDIKRSGELGKMFDIPMDGSKSRKSGNLSAA--KNGQF 46 MS+ AMPYTGGDIKRSGELGKMFDIP DG+KSRKSG + A ++G F Sbjct: 30 MSAVAMPYTGGDIKRSGELGKMFDIPADGTKSRKSGPIPGAPSRSGSF 77
BLAST of Vfaba.Tiffany.R1.1g104240.1 vs. Araport11
Match: AT1G78880.1 (| Ubiquitin-specific protease family C19-related protein | Chr1:29653068-29654819 REVERSE LENGTH=468 | 201606) HSP 1 Score: 71.633 bits (174), Expect = 6.040e-15 Identity = 32/41 (78.05%), Postives = 36/41 (87.80%), Query Frame = 0 Query: 1 MSSAAMPYTGGDIKRSGELGKMFDIPMDGSKSRKSGNLSAA 41 MSS AMPYTGGDIK+SGELGKMFDIP DG+KSRKSG ++ Sbjct: 30 MSSVAMPYTGGDIKKSGELGKMFDIPTDGTKSRKSGPITGG 70 The following BLAST results are available for this feature:
BLAST of Vfaba.Tiffany.R1.1g104240.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt TrEMBL) Total hits: 10
BLAST of Vfaba.Tiffany.R1.1g104240.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt Swissprot) Total hits: 1
BLAST of Vfaba.Tiffany.R1.1g104240.1 vs. Araport11
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs arabidopsis Araport11) Total hits: 2
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vfaba.Tiffany.R1.1g104240.1_tif_v1 ID=Vfaba.Tiffany.R1.1g104240.1_tif_v1; Name=Vfaba.Tiffany.R1.1g104240.1; organism=Vicia faba; type=mRNA; length=504bpback to top protein sequence of Vfaba.Tiffany.R1.1g104240.1_tif_v1 >Vfaba.Tiffany.R1.1g104240.1_tif_v1 ID=Vfaba.Tiffany.R1.1g104240.1_tif_v1; Name=Vfaba.Tiffany.R1.1g104240.1_tif_v1; organism=Vicia faba; type=polypeptide; length=167bpback to top mRNA from alignment at chr1S:908438519..908449115+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>Vfaba.Tiffany.R1.1g104240.1_tif_v1 ID=Vfaba.Tiffany.R1.1g104240.1_tif_v1; Name=Vfaba.Tiffany.R1.1g104240.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr1S:908438519..908449115+ (Vicia fababack to top |