Vfaba.Tiffany.R1.2g140680.1

Transcript Overview
NameVfaba.Tiffany.R1.2g140680.1
Unique NameVfaba.Tiffany.R1.2g140680.1_tif_v1
TypemRNA
OrganismVicia faba (Faba bean)
Sequence length690
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr2chromosomechr2:1110879964..1110883046 -Vicia faba cv. Tiffany genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
tifzwsR223Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
tifzwsR244Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
astifL573Vigna angularis Jingnong 6 genome v1.1Vigna angularis
astifL576Vigna angularis Jingnong 6 genome v1.1Vigna angularis
catifL285Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
catifL400Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
catifL607Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
crtifL055Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crtifL867Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
tiftifR146Vicia faba cv. Tiffany genome v1.0Vicia faba
pvtifL359Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pstifL488Pisum sativum Cameor genome v1aPisum sativum
pstifL569Pisum sativum Cameor genome v1aPisum sativum
pvtifL789Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
tifvfhR144Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvfhR153Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvfhR160Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvuR297Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
tifvuR332Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
antifL0329Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
caitifL552Cicer arietinum ICC 4958 genome v2Cicer arietinum
caitifL574Cicer arietinum ICC 4958 genome v2Cicer arietinum
antifL0379Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
caitifL819Cicer arietinum ICC 4958 genome v2Cicer arietinum
antifL0737Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
tifvrvR257Vigna radiata cv. VC1973A genome v6.0Vigna radiata
tifvuaR273Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
tifvssR251Vicia sativa cv. Studenica genome v1.0Vicia sativa
tifvssR269Vicia sativa cv. Studenica genome v1.0Vicia sativa
tifvssR288Vicia sativa cv. Studenica genome v1.0Vicia sativa
cantifL342Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cantifL541Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
Ca_14910.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
jg55153.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Cr_02885.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
rna-XM_004501396.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
rna-TanjilR_30665Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Ca_15106.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
LR48_mrnaVigan04g233700Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Ca_01645Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Psat05G0124500-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vfaba.Hedin2.R1.2g174280.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.2g140680Vfaba.Tiffany.R1.2g140680_tif_v1Vicia fabagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.2g140680.1_tif_v1-exonVfaba.Tiffany.R1.2g140680.1_tif_v1-exon-chr2_tif_v1:1110879964..1110880058Vicia fabaexon
Vfaba.Tiffany.R1.2g140680.1_tif_v1-exonVfaba.Tiffany.R1.2g140680.1_tif_v1-exon-chr2_tif_v1:1110881537..1110881618Vicia fabaexon
Vfaba.Tiffany.R1.2g140680.1_tif_v1-exonVfaba.Tiffany.R1.2g140680.1_tif_v1-exon-chr2_tif_v1:1110881913..1110881974Vicia fabaexon
Vfaba.Tiffany.R1.2g140680.1_tif_v1-exonVfaba.Tiffany.R1.2g140680.1_tif_v1-exon-chr2_tif_v1:1110882271..1110882553Vicia fabaexon
Vfaba.Tiffany.R1.2g140680.1_tif_v1-exonVfaba.Tiffany.R1.2g140680.1_tif_v1-exon-chr2_tif_v1:1110882639..1110882757Vicia fabaexon
Vfaba.Tiffany.R1.2g140680.1_tif_v1-exonVfaba.Tiffany.R1.2g140680.1_tif_v1-exon-chr2_tif_v1:1110882998..1110883046Vicia fabaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.2g140680.1_tif_v1-cdsVfaba.Tiffany.R1.2g140680.1_tif_v1-cds-chr2_tif_v1:1110879964..1110880058Vicia fabaCDS
Vfaba.Tiffany.R1.2g140680.1_tif_v1-cdsVfaba.Tiffany.R1.2g140680.1_tif_v1-cds-chr2_tif_v1:1110881537..1110881618Vicia fabaCDS
Vfaba.Tiffany.R1.2g140680.1_tif_v1-cdsVfaba.Tiffany.R1.2g140680.1_tif_v1-cds-chr2_tif_v1:1110881913..1110881974Vicia fabaCDS
Vfaba.Tiffany.R1.2g140680.1_tif_v1-cdsVfaba.Tiffany.R1.2g140680.1_tif_v1-cds-chr2_tif_v1:1110882271..1110882553Vicia fabaCDS
Vfaba.Tiffany.R1.2g140680.1_tif_v1-cdsVfaba.Tiffany.R1.2g140680.1_tif_v1-cds-chr2_tif_v1:1110882639..1110882757Vicia fabaCDS
Vfaba.Tiffany.R1.2g140680.1_tif_v1-cdsVfaba.Tiffany.R1.2g140680.1_tif_v1-cds-chr2_tif_v1:1110882998..1110883046Vicia fabaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.2g140680.1_tif_v1Vfaba.Tiffany.R1.2g140680.1_tif_v1Vicia fabapolypeptide
Vfaba.Tiffany.R1.2g140680.1_tif_v1Vfaba.Tiffany.R1.2g140680.1_tif_v1-proteinVicia fabapolypeptide


Homology
[Close]
BLAST of Vfaba.Tiffany.R1.2g140680.1 vs. UniProtKB/TrEMBL
Match: tr|G7J8B6|G7J8B6_MEDTR (Putative nucleotide-binding alpha-beta plait domain-containing protein OS=Medicago truncatula OX=3880 GN=11429869 PE=4 SV=1)

HSP 1 Score: 388.267 bits (996), Expect = 4.257e-135
Identity = 190/214 (88.79%), Postives = 198/214 (92.52%), Query Frame = 0 
Query:   14 SDGANFARSSYAGYIPSEAPSLASPRPKSTEFPGYGTDYLHKDVSLFRTEPYGVDDIRGSRVHSEPNVVGYSPLEDPKLSTKRDTLPGVDPSIPDAIANNERSISKSSYDALPVSAAESNILFVGSLPKDCTRREVGHLFRPFIGYKDIKVVHKEPRRSGDKAMIFCFVEFTEPKCALTAMEALQGYKFDDKKPDSPTLKIQFAHFPFRPPTDD 227
            SDGA+FARSSYAGYIPSEAPSLASP PKST+FPGYG+DYL+KDVSLFR EPYGVDD RGSRVHSE N   Y+PLED  LSTKRD L GV   +PD IANNERSISKS+YDALPVSAAESNILFVG LPKDCTRREVGHLFRPFIGYKDIKVVHKEPRRSGDKAMIFCFVEFTEPKCALTAMEALQGYKFDDKKPDSPTLKI+FAHFPFRPPTDD
Sbjct:   14 SDGASFARSSYAGYIPSEAPSLASPLPKSTDFPGYGSDYLNKDVSLFRMEPYGVDDTRGSRVHSEHNATSYNPLEDVDLSTKRDALLGVSTGVPDPIANNERSISKSNYDALPVSAAESNILFVGGLPKDCTRREVGHLFRPFIGYKDIKVVHKEPRRSGDKAMIFCFVEFTEPKCALTAMEALQGYKFDDKKPDSPTLKIKFAHFPFRPPTDD 227
[Close]
BLAST of Vfaba.Tiffany.R1.2g140680.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2YAJ0|A0A1S2YAJ0_CICAR (U1 small nuclear ribonucleoprotein A-like OS=Cicer arietinum OX=3827 GN=LOC101507724 PE=4 SV=1)

HSP 1 Score: 379.793 bits (974), Expect = 7.460e-132
Identity = 188/227 (82.82%), Postives = 204/227 (89.87%), Query Frame = 0 
Query:    1 MADPYYPYPTSAPSDGANFARSSYAGYIPSEAPSLASPRPKSTEFPGYGTDYLHKDVSLFRTEPYGVDDIRGSRVHSEPNVVGYSPLEDPKLSTKRDTLPGVDPSIPDAIANNERSISKSSYDALPVSAAESNILFVGSLPKDCTRREVGHLFRPFIGYKDIKVVHKEPRRSGDKAMIFCFVEFTEPKCALTAMEALQGYKFDDKKPDSPTLKIQFAHFPFRPPTDD 227
            MADPY+PYPT APSDGA F+R+SYAG+IPSE PSLASP PKST+FPGYG+DYLHKDVSLFR EPYGVDD RGSRVHSE N  GYS  EDP+LSTKRDT  GV+P +PD   NNE S+ KS+YDA+PV+AAESNILFVG LPKDCTRREVGHLFRPFIGYKDIK+VHKEPRRSGDK+MI CFVEFTEPKCALTAMEALQGYKFDDKKPDS  LKIQFAHFPFRPPT+D
Sbjct:    1 MADPYHPYPTPAPSDGATFSRTSYAGFIPSETPSLASPHPKSTDFPGYGSDYLHKDVSLFRMEPYGVDDTRGSRVHSEHNATGYSHPEDPELSTKRDTPLGVNPGVPDL--NNE-SMPKSNYDAVPVTAAESNILFVGGLPKDCTRREVGHLFRPFIGYKDIKLVHKEPRRSGDKSMILCFVEFTEPKCALTAMEALQGYKFDDKKPDSSILKIQFAHFPFRPPTND 224
[Close]
BLAST of Vfaba.Tiffany.R1.2g140680.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3PR17|A0A2K3PR17_TRIPR (RNA-binding protein with multiple splicing OS=Trifolium pratense OX=57577 GN=L195_g014489 PE=4 SV=1)

HSP 1 Score: 343.199 bits (879), Expect = 1.476e-117
Identity = 172/204 (84.31%), Postives = 182/204 (89.22%), Query Frame = 0 
Query:    1 MADPYYPYPTSAPSDGANFARSSYAGYIPSEAPSLASPRPKSTEFPGYGTDYLHKDVSLFRTEPYGVDDIRGSRVHSEPNVVGYSPLEDPKLSTKRDTLPGVDPSIPDAIANNERSISKSSYDALPVSAAESNILFVGSLPKDCTRREVGHLFRPFIGYKDIKVVHKEPRRSGDKAMIFCFVEFTEPKCALTAMEALQGYKFDD 204
            MADPYY YPT A SD A+FARSSYAGY+PSEAPSLASP PKST+FPGYG+DY HK+ SLFR EPYGVDD RGSRVHSE NV  YSPLEDP LSTKRDT  GV+PS+PDAI NNER ISKSSYD +PVSAAESNILFVG LPKDCTRREVGHLFRPFIGYKDIK+VHKEPRRSGDKAMIFCFVEFTEPKCALTAMEALQG+   D
Sbjct:    1 MADPYYSYPTPATSD-ASFARSSYAGYLPSEAPSLASPHPKSTDFPGYGSDYPHKEGSLFRMEPYGVDDTRGSRVHSEHNVTSYSPLEDPGLSTKRDTPLGVNPSVPDAIVNNERLISKSSYDPVPVSAAESNILFVGGLPKDCTRREVGHLFRPFIGYKDIKLVHKEPRRSGDKAMIFCFVEFTEPKCALTAMEALQGWARSD 203
[Close]
BLAST of Vfaba.Tiffany.R1.2g140680.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6N593|A0A2Z6N593_TRISU (RRM domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_315090 PE=4 SV=1)

HSP 1 Score: 336.265 bits (861), Expect = 5.247e-115
Identity = 169/199 (84.92%), Postives = 177/199 (88.94%), Query Frame = 0 
Query:    1 MADPYYPYPTSAPSDGANFARSSYAGYIPSEAPSLASPRPKSTEFPGYGTDYLHKDVSLFRTEPYGVDDIRGSRVHSEPNVVGYSPLEDPKLSTKRDTLPGVDPSIPDAIANNERSISKSSYDALPVSAAESNILFVGSLPKDCTRREVGHLFRPFIGYKDIKVVHKEPRRSGDKAMIFCFVEFTEPKCALTAMEALQG 199
            MADPYYPY T A SD A+FARSSYAGYIPSEAPSLAS  PKST+FPGYG+DY HK+ SLFR EPY VDD RGSRVHSE NV  YSPLEDP LSTKRD   GV+PS+PDAIANNER ISKSSYD +PVSAAESNILFVG LPKDCTRREVGHLFRPFIGYKDIK+VHKEPRRSGDKAMIFCFVEF EPKCALTAMEALQG
Sbjct:    1 MADPYYPYLTPATSD-ASFARSSYAGYIPSEAPSLASSHPKSTDFPGYGSDYAHKEGSLFRMEPYSVDDTRGSRVHSEHNVTSYSPLEDPGLSTKRDIPLGVNPSVPDAIANNERLISKSSYDPVPVSAAESNILFVGGLPKDCTRREVGHLFRPFIGYKDIKLVHKEPRRSGDKAMIFCFVEFNEPKCALTAMEALQG 198
[Close]
BLAST of Vfaba.Tiffany.R1.2g140680.1 vs. UniProtKB/TrEMBL
Match: tr|A0A072V248|A0A072V248_MEDTR (RNA recognition motif OS=Medicago truncatula OX=3880 GN=11429869 PE=4 SV=1)

HSP 1 Score: 330.872 bits (847), Expect = 1.166e-112
Identity = 174/202 (86.14%), Postives = 182/202 (90.10%), Query Frame = 0 
Query:    1 MADPYYPYPTSAPSDGANFARSSYAGYIPSEAPSLASPRPKSTEFPGYGTDYLHKDVSLFRTEPYGVDDIRGSRVHSEPNVVGYSPLEDPKLSTKRDTLPGVDPSIPDAIANNERSISKSSYDALPVSAAESNILFVGSLPKDCTRREVGHLFRPFIGYKDIKVVHKEPRRSGDKAMIFCFVEFTEPKCALTAMEALQGYKF 202
            M DPYYPYPT APSDGA+FARSSYAGYIPSEAPSLASP PKST+FPGYG+DYL+KDVSLFR EPYGVDD RGSRVHSE N   Y+PLED  LSTKRD L GV   +PD IANNERSISKS+YDALPVSAAESNILFVG LPKDCTRREVGHLFRPFIGYKDIKVVHKEPRRSGDKAMIFCFVEFTEPKCALTAMEALQ  K+
Sbjct:    1 MTDPYYPYPTPAPSDGASFARSSYAGYIPSEAPSLASPLPKSTDFPGYGSDYLNKDVSLFRMEPYGVDDTRGSRVHSEHNATSYNPLEDVDLSTKRDALLGVSTGVPDPIANNERSISKSNYDALPVSAAESNILFVGGLPKDCTRREVGHLFRPFIGYKDIKVVHKEPRRSGDKAMIFCFVEFTEPKCALTAMEALQVSKY 202
[Close]
BLAST of Vfaba.Tiffany.R1.2g140680.1 vs. UniProtKB/TrEMBL
Match: tr|A0A392MCG4|A0A392MCG4_9FABA (RNA-binding protein with multiple splicing (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0005680 PE=4 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 2.607e-107
Identity = 157/181 (86.74%), Postives = 165/181 (91.16%), Query Frame = 0 
Query:   18 NFARSSYAGYIPSEAPSLASPRPKSTEFPGYGTDYLHKDVSLFRTEPYGVDDIRGSRVHSEPNVVGYSPLEDPKLSTKRDTLPGVDPSIPDAIANNERSISKSSYDALPVSAAESNILFVGSLPKDCTRREVGHLFRPFIGYKDIKVVHKEPRRSGDKAMIFCFVEFTEPKCALTAMEALQ 198
            +FARSSYAGYIPSEAPSLASP PKST+FPGYG+DY HK+ SLFR EPYGVDD RGS VHSE NV  YSPLEDP LSTKRDT  GV+PS+PDAI NNER ISKSSYD +PVSAAESNILFVG LPKDCTRREVGHLFRPFIGYKDIK+VHKEPRRSGDKAMIFCFVEFTEPKCALTAMEALQ
Sbjct:    1 SFARSSYAGYIPSEAPSLASPHPKSTDFPGYGSDYPHKEGSLFRMEPYGVDDTRGSXVHSEHNVKSYSPLEDPGLSTKRDTPLGVNPSVPDAIVNNERLISKSSYDPVPVSAAESNILFVGGLPKDCTRREVGHLFRPFIGYKDIKLVHKEPRRSGDKAMIFCFVEFTEPKCALTAMEALQ 181
[Close]
BLAST of Vfaba.Tiffany.R1.2g140680.1 vs. UniProtKB/TrEMBL
Match: tr|A0A371GFY6|A0A371GFY6_MUCPR (RNA-binding protein 1 (Fragment) OS=Mucuna pruriens OX=157652 GN=RBP1 PE=4 SV=1)

HSP 1 Score: 308.916 bits (790), Expect = 6.287e-104
Identity = 164/226 (72.57%), Postives = 180/226 (79.65%), Query Frame = 0 
Query:    1 MADPYYPYPTSAPSDGANFARSSYAGYIPSEAPSLASPRPKSTEFPGYGTDYLHKDVSLFRTEPYGVDDIRGSRVHSEPNVVGYSPLEDPKLSTKRDTLPGVDPSIPDAIANNERSISKSSYDALPVSAAESNILFVGSLPKDCTRREVGHLFRPFIGYKDIKVVHKEPRRSGDKAMIFCFVEFTEPKCALTAMEALQGYKFDDKKPDSPTLKIQFAHFPFRPPTD 226
            MADPYY Y T A +DGA+ ARSS+AGYIPSE PS       STE  G G+DYL +D+ LF    Y VDD  GSRVHSEP V GYSP EDP LS KRDT  G++ ++PD   N+ER ISKSSYD LP+SAA+SNILFVG +P DCTRREVGHLFRPFIGYKDIKVVHKEPRRSGDKAM  CFVEF + K ALTAMEALQGYKFDDKKPDSPTLKIQFAHFPFR P+D
Sbjct:    1 MADPYYSYGTPAAADGASIARSSFAGYIPSE-PS------NSTELRGIGSDYLQRDIGLF----YSVDDPVGSRVHSEP-VKGYSPREDPDLSKKRDTPLGINHAVPDV--NSERPISKSSYDGLPISAADSNILFVGGVPNDCTRREVGHLFRPFIGYKDIKVVHKEPRRSGDKAMTLCFVEFVDSKFALTAMEALQGYKFDDKKPDSPTLKIQFAHFPFRLPSD 212
[Close]
BLAST of Vfaba.Tiffany.R1.2g140680.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445KWY1|A0A445KWY1_GLYSO (RNA-binding protein 1 OS=Glycine soja OX=3848 GN=D0Y65_008851 PE=4 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 2.865e-101
Identity = 158/227 (69.60%), Postives = 175/227 (77.09%), Query Frame = 0 
Query:    1 MADPYYPYPTSAPSDGANFARSSYAGYIPSEAPSLASPRPKSTEFPGYGTDYLHKDVSLFRTEPYGVDDIRGSRVHSEPNVVGYSPLEDPKLSTKRDTLP-GVDPSIPDAIANNERSISKSSYDALPVSAAESNILFVGSLPKDCTRREVGHLFRPFIGYKDIKVVHKEPRRSGDKAMIFCFVEFTEPKCALTAMEALQGYKFDDKKPDSPTLKIQFAHFPFRPPTD 226
            MADPYY Y     +DGA+ ARSS+AGYIPSE PS       STE  G G+DYL +D+ LF    Y  DD  GSRVHSEP V GYSPL DP LS KRDT P G++  +PD   ++ER  SKSSYD LP+SAA+SNILFVG LPKDCTRREVGHLFRPFIGYKDI+VVHKEPRRSGDKAM  CFVEF +  CALTA+E LQGYKFDDKKPDSPTLKIQ AHFPFR P+D
Sbjct:    1 MADPYYSYGAPVGADGASIARSSFAGYIPSE-PS------NSTELRGIGSDYLQRDIGLF----YSADDTLGSRVHSEP-VKGYSPLADPGLSKKRDTTPLGINNGVPDV--SSERPASKSSYDGLPISAADSNILFVGGLPKDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMTLCFVEFVDSNCALTALETLQGYKFDDKKPDSPTLKIQLAHFPFRLPSD 213
[Close]
BLAST of Vfaba.Tiffany.R1.2g140680.1 vs. UniProtKB/TrEMBL
Match: tr|I1K8E6|I1K8E6_SOYBN (RRM domain-containing protein OS=Glycine max OX=3847 GN=100809186 PE=4 SV=1)

HSP 1 Score: 299.671 bits (766), Expect = 5.103e-100
Identity = 157/227 (69.16%), Postives = 173/227 (76.21%), Query Frame = 0 
Query:    1 MADPYYPYPTSAPSDGANFARSSYAGYIPSEAPSLASPRPKSTEFPGYGTDYLHKDVSLFRTEPYGVDDIRGSRVHSEPNVVGYSPLEDPKLSTKRDTLP-GVDPSIPDAIANNERSISKSSYDALPVSAAESNILFVGSLPKDCTRREVGHLFRPFIGYKDIKVVHKEPRRSGDKAMIFCFVEFTEPKCALTAMEALQGYKFDDKKPDSPTLKIQFAHFPFRPPTD 226
            MADPYY Y   A +DGA+ ARSS+AGYIPSE      P   +TE    G+DYL +D+ LF    Y  DD  GSRVHSEP V GYSPL DP  S KRDT P  +   +PD   N+ER  SKSSYD LP+SAA+SNILFVG LP DCTRREVGHLFRPFIGYKDI+VVHKEPRRSGDKAM  CFVEF + KCALTAMEALQGYKFDDKKPDSPTLKI+FAHFPFR P+D
Sbjct:    1 MADPYYSYGAPAAADGASIARSSFAGYIPSE------PSNSTTELRSIGSDYLQRDIGLF----YSADDTFGSRVHSEP-VKGYSPLADPDPSKKRDTTPLSITHGVPDV--NSERPASKSSYDGLPISAADSNILFVGGLPNDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMTLCFVEFVDSKCALTAMEALQGYKFDDKKPDSPTLKIEFAHFPFRLPSD 214
[Close]
BLAST of Vfaba.Tiffany.R1.2g140680.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0B2RFY0|A0A0B2RFY0_GLYSO (RNA-binding protein 1 isoform A OS=Glycine soja OX=3848 GN=D0Y65_013813 PE=4 SV=1)

HSP 1 Score: 299.671 bits (766), Expect = 5.103e-100
Identity = 157/227 (69.16%), Postives = 173/227 (76.21%), Query Frame = 0 
Query:    1 MADPYYPYPTSAPSDGANFARSSYAGYIPSEAPSLASPRPKSTEFPGYGTDYLHKDVSLFRTEPYGVDDIRGSRVHSEPNVVGYSPLEDPKLSTKRDTLP-GVDPSIPDAIANNERSISKSSYDALPVSAAESNILFVGSLPKDCTRREVGHLFRPFIGYKDIKVVHKEPRRSGDKAMIFCFVEFTEPKCALTAMEALQGYKFDDKKPDSPTLKIQFAHFPFRPPTD 226
            MADPYY Y   A +DGA+ ARSS+AGYIPSE      P   +TE    G+DYL +D+ LF    Y  DD  GSRVHSEP V GYSPL DP  S KRDT P  +   +PD   N+ER  SKSSYD LP+SAA+SNILFVG LP DCTRREVGHLFRPFIGYKDI+VVHKEPRRSGDKAM  CFVEF + KCALTAMEALQGYKFDDKKPDSPTLKI+FAHFPFR P+D
Sbjct:    1 MADPYYSYGAPAAADGASIARSSFAGYIPSE------PSNSTTELRSIGSDYLQRDIGLF----YSADDTFGSRVHSEP-VKGYSPLADPDPSKKRDTTPLSITHGVPDV--NSERPASKSSYDGLPISAADSNILFVGGLPNDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMTLCFVEFVDSKCALTAMEALQGYKFDDKKPDSPTLKIEFAHFPFRLPSD 214
[Close]
BLAST of Vfaba.Tiffany.R1.2g140680.1 vs. UniProtKB/Swiss-Prot
Match: sp|G7ID19|RBP2_MEDTR (RNA-binding protein 2 OS=Medicago truncatula OX=3880 GN=RBP2 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.726e-28
Identity = 47/107 (43.93%), Postives = 72/107 (67.29%), Query Frame = 0 
Query:  116 SISKSSYDALPVSAAESNILFVGSLPKDCTRREVGHLFRPFIGYKDIKVVHKEPRRSGDKAMIFCFVEFTEPKCALTAMEALQGYKFDDKKPDSPTLKIQFAHFPFR 222
            ++S+   + +P+    S+ L+V  LP D T+REV H+FRPF+GY+++++V KE +  G   +I CFV+F  P CA TA+ ALQGYK D+  P+S  L++QF+  P R
Sbjct:  135 AVSRPGPETIPLPRDASSTLYVEGLPSDSTKREVAHIFRPFVGYREVRLVAKESKHRGGDPLILCFVDFANPACAATALSALQGYKVDEINPESSYLRLQFSRSPGR 241
[Close]
BLAST of Vfaba.Tiffany.R1.2g140680.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q8H0P8|RBP1_MEDTR (RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 4.228e-28
Identity = 46/89 (51.69%), Postives = 65/89 (73.03%), Query Frame = 0 
Query:  132 SNILFVGSLPKDCTRREVGHLFRPFIGYKDIKVVHKEPRRSGDKAMIFCFVEFTEPKCALTAMEALQGYKFDDKKPDSPTLKIQFAHFP 220
            S  L++  LP DCTRREV H+FRPF+GY+++++V KE +  GD  +I CFV+F  P CA TA+ ALQGYK D+  P+S  L++QF+ +P
Sbjct:  150 SPTLYIEGLPSDCTRREVAHIFRPFVGYREVRLVSKEAKHRGDP-LILCFVDFANPACAATALSALQGYKVDEINPESSHLRLQFSRYP 237
[Close]
BLAST of Vfaba.Tiffany.R1.2g140680.1 vs. UniProtKB/Swiss-Prot
Match: sp|A1A6K6|NSRA_ARATH (Nuclear speckle RNA-binding protein A OS=Arabidopsis thaliana OX=3702 GN=NSRA PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.036e-26
Identity = 42/89 (47.19%), Postives = 64/89 (71.91%), Query Frame = 0 
Query:  132 SNILFVGSLPKDCTRREVGHLFRPFIGYKDIKVVHKEPRRSGDKAMIFCFVEFTEPKCALTAMEALQGYKFDDKKPDSPTLKIQFAHFP 220
            SN L+V  LP +C+RREV H+FRPF+GY+++++V K+ +      ++ CFV+FT P CA TA+ ALQGY+ D+ + DS  L++QF+  P
Sbjct:  135 SNTLYVEGLPSNCSRREVAHIFRPFVGYREVRLVTKDSKHRNGDPIVLCFVDFTNPACAATALSALQGYRMDENESDSKFLRLQFSRKP 223
[Close]
BLAST of Vfaba.Tiffany.R1.2g140680.1 vs. UniProtKB/Swiss-Prot
Match: sp|F4HWF9|NSRB_ARATH (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.503e-23
Identity = 50/133 (37.59%), Postives = 78/133 (58.65%), Query Frame = 0 
Query:   97 DTLPGVDPSIPDAIANNERSISKSSYDAL--------PVSAAESNILFVGSLPKDCTRREVGHLFRPFIGYKDIKVVHKEPR-RSGDKAMIFCFVEFTEPKCALTAMEALQGYKFDDKKPDSPTLKIQFAHFP 220
            + + G   S+P     N R +     D++        P+    SN L+V  LP +C+RREV H+FRPF+GY+++++V ++ + RSGD   + CFV+F    CA TA+ ALQ Y+ D+ +PDS  L++QF   P
Sbjct:  279 ELMAGCGGSLPSDFRPNGRDMGFGQLDSVGRPGREPHPLPPDVSNTLYVEGLPSNCSRREVSHIFRPFVGYREVRLVTQDSKHRSGDPT-VLCFVDFENSACAATALSALQDYRMDEDEPDSKILRLQFFRNP 410
[Close]
BLAST of Vfaba.Tiffany.R1.2g140680.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q6JB11|MEG5_MAIZE (Protein MATERNALLY EXPRESSED GENE 5 OS=Zea mays OX=4577 GN=MEG5 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.486e-19
Identity = 36/80 (45.00%), Postives = 54/80 (67.50%), Query Frame = 0 
Query:  132 SNILFVGSLPKDCTRREVGHLFRPFIGYKDIKVVHKEPRRSGDKAMIFCFVEFTEPKCALTAMEALQGYKFDDKKPDSPT 211
            S+ L++  LP +CTRREV H+FRPF+G++++++V+KE R  G    + CFV+F  P  A  A+EALQG+  DD    +P 
Sbjct:   37 SSTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFVDFDNPAQATIALEALQGHVTDDVNVSAPA 116
[Close]
BLAST of Vfaba.Tiffany.R1.2g140680.1 vs. Araport11
Match: AT1G76940.2 (| RNA-binding (RRM/RBD/RNP motifs) family protein | Chr1:28902707-28904085 REVERSE LENGTH=179 | 201606)

HSP 1 Score: 105.145 bits (261), Expect = 6.206e-28
Identity = 42/89 (47.19%), Postives = 64/89 (71.91%), Query Frame = 0 
Query:  132 SNILFVGSLPKDCTRREVGHLFRPFIGYKDIKVVHKEPRRSGDKAMIFCFVEFTEPKCALTAMEALQGYKFDDKKPDSPTLKIQFAHFP 220
            SN L+V  LP +C+RREV H+FRPF+GY+++++V K+ +      ++ CFV+FT P CA TA+ ALQGY+ D+ + DS  L++QF+  P
Sbjct:   81 SNTLYVEGLPSNCSRREVAHIFRPFVGYREVRLVTKDSKHRNGDPIVLCFVDFTNPACAATALSALQGYRMDENESDSKFLRLQFSRKP 169
[Close]
BLAST of Vfaba.Tiffany.R1.2g140680.1 vs. Araport11
Match: AT1G76940.1 (| RNA-binding (RRM/RBD/RNP motifs) family protein | Chr1:28902707-28904085 REVERSE LENGTH=233 | 201606)

HSP 1 Score: 105.916 bits (263), Expect = 1.060e-27
Identity = 42/89 (47.19%), Postives = 64/89 (71.91%), Query Frame = 0 
Query:  132 SNILFVGSLPKDCTRREVGHLFRPFIGYKDIKVVHKEPRRSGDKAMIFCFVEFTEPKCALTAMEALQGYKFDDKKPDSPTLKIQFAHFP 220
            SN L+V  LP +C+RREV H+FRPF+GY+++++V K+ +      ++ CFV+FT P CA TA+ ALQGY+ D+ + DS  L++QF+  P
Sbjct:  135 SNTLYVEGLPSNCSRREVAHIFRPFVGYREVRLVTKDSKHRNGDPIVLCFVDFTNPACAATALSALQGYRMDENESDSKFLRLQFSRKP 223
[Close]
BLAST of Vfaba.Tiffany.R1.2g140680.1 vs. Araport11
Match: AT1G21320.5 (| nucleic acid/nucleotide binding protein | Chr1:7462834-7463938 REVERSE LENGTH=210 | 201606)

HSP 1 Score: 100.138 bits (248), Expect = 1.083e-25
Identity = 50/133 (37.59%), Postives = 78/133 (58.65%), Query Frame = 0 
Query:   97 DTLPGVDPSIPDAIANNERSISKSSYDAL--------PVSAAESNILFVGSLPKDCTRREVGHLFRPFIGYKDIKVVHKEPR-RSGDKAMIFCFVEFTEPKCALTAMEALQGYKFDDKKPDSPTLKIQFAHFP 220
            + + G   S+P     N R +     D++        P+    SN L+V  LP +C+RREV H+FRPF+GY+++++V ++ + RSGD   + CFV+F    CA TA+ ALQ Y+ D+ +PDS  L++QF   P
Sbjct:   68 ELMAGCGGSLPSDFRPNGRDMGFGQLDSVGRPGREPHPLPPDVSNTLYVEGLPSNCSRREVSHIFRPFVGYREVRLVTQDSKHRSGDPT-VLCFVDFENSACAATALSALQDYRMDEDEPDSKILRLQFFRNP 199
[Close]
BLAST of Vfaba.Tiffany.R1.2g140680.1 vs. Araport11
Match: AT1G21320.2 (| nucleic acid/nucleotide binding protein | Chr1:7462834-7466164 REVERSE LENGTH=253 | 201606)

HSP 1 Score: 100.138 bits (248), Expect = 2.775e-25
Identity = 50/133 (37.59%), Postives = 78/133 (58.65%), Query Frame = 0 
Query:   97 DTLPGVDPSIPDAIANNERSISKSSYDAL--------PVSAAESNILFVGSLPKDCTRREVGHLFRPFIGYKDIKVVHKEPR-RSGDKAMIFCFVEFTEPKCALTAMEALQGYKFDDKKPDSPTLKIQFAHFP 220
            + + G   S+P     N R +     D++        P+    SN L+V  LP +C+RREV H+FRPF+GY+++++V ++ + RSGD   + CFV+F    CA TA+ ALQ Y+ D+ +PDS  L++QF   P
Sbjct:  111 ELMAGCGGSLPSDFRPNGRDMGFGQLDSVGRPGREPHPLPPDVSNTLYVEGLPSNCSRREVSHIFRPFVGYREVRLVTQDSKHRSGDPT-VLCFVDFENSACAATALSALQDYRMDEDEPDSKILRLQFFRNP 242
[Close]
BLAST of Vfaba.Tiffany.R1.2g140680.1 vs. Araport11
Match: AT1G21320.3 (| nucleic acid/nucleotide binding protein | Chr1:7462834-7464076 REVERSE LENGTH=256 | 201606)

HSP 1 Score: 98.9821 bits (245), Expect = 7.966e-25
Identity = 50/133 (37.59%), Postives = 78/133 (58.65%), Query Frame = 0 
Query:   97 DTLPGVDPSIPDAIANNERSISKSSYDAL--------PVSAAESNILFVGSLPKDCTRREVGHLFRPFIGYKDIKVVHKEPR-RSGDKAMIFCFVEFTEPKCALTAMEALQGYKFDDKKPDSPTLKIQFAHFP 220
            + + G   S+P     N R +     D++        P+    SN L+V  LP +C+RREV H+FRPF+GY+++++V ++ + RSGD   + CFV+F    CA TA+ ALQ Y+ D+ +PDS  L++QF   P
Sbjct:  114 ELMAGCGGSLPSDFRPNGRDMGFGQLDSVGRPGREPHPLPPDVSNTLYVEGLPSNCSRREVSHIFRPFVGYREVRLVTQDSKHRSGDPT-VLCFVDFENSACAATALSALQDYRMDEDEPDSKILRLQFFRNP 245
[Close]
BLAST of Vfaba.Tiffany.R1.2g140680.1 vs. Araport11
Match: AT1G21320.1 (| nucleic acid/nucleotide binding protein | Chr1:7462834-7465200 REVERSE LENGTH=421 | 201606)

HSP 1 Score: 100.138 bits (248), Expect = 2.560e-24
Identity = 50/133 (37.59%), Postives = 78/133 (58.65%), Query Frame = 0 
Query:   97 DTLPGVDPSIPDAIANNERSISKSSYDAL--------PVSAAESNILFVGSLPKDCTRREVGHLFRPFIGYKDIKVVHKEPR-RSGDKAMIFCFVEFTEPKCALTAMEALQGYKFDDKKPDSPTLKIQFAHFP 220
            + + G   S+P     N R +     D++        P+    SN L+V  LP +C+RREV H+FRPF+GY+++++V ++ + RSGD   + CFV+F    CA TA+ ALQ Y+ D+ +PDS  L++QF   P
Sbjct:  279 ELMAGCGGSLPSDFRPNGRDMGFGQLDSVGRPGREPHPLPPDVSNTLYVEGLPSNCSRREVSHIFRPFVGYREVRLVTQDSKHRSGDPT-VLCFVDFENSACAATALSALQDYRMDEDEPDSKILRLQFFRNP 410
The following BLAST results are available for this feature:
BLAST of Vfaba.Tiffany.R1.2g140680.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|G7J8B6|G7J8B6_MEDTR4.257e-13588.79Putative nucleotide-binding alpha-beta plait domai... [more]
tr|A0A1S2YAJ0|A0A1S2YAJ0_CICAR7.460e-13282.82U1 small nuclear ribonucleoprotein A-like OS=Cicer... [more]
tr|A0A2K3PR17|A0A2K3PR17_TRIPR1.476e-11784.31RNA-binding protein with multiple splicing OS=Trif... [more]
tr|A0A2Z6N593|A0A2Z6N593_TRISU5.247e-11584.92RRM domain-containing protein OS=Trifolium subterr... [more]
tr|A0A072V248|A0A072V248_MEDTR1.166e-11286.14RNA recognition motif OS=Medicago truncatula OX=38... [more]
tr|A0A392MCG4|A0A392MCG4_9FABA2.607e-10786.74RNA-binding protein with multiple splicing (Fragme... [more]
tr|A0A371GFY6|A0A371GFY6_MUCPR6.287e-10472.57RNA-binding protein 1 (Fragment) OS=Mucuna prurien... [more]
tr|A0A445KWY1|A0A445KWY1_GLYSO2.865e-10169.60RNA-binding protein 1 OS=Glycine soja OX=3848 GN=D... [more]
tr|I1K8E6|I1K8E6_SOYBN5.103e-10069.16RRM domain-containing protein OS=Glycine max OX=38... [more]
tr|A0A0B2RFY0|A0A0B2RFY0_GLYSO5.103e-10069.16RNA-binding protein 1 isoform A OS=Glycine soja OX... [more]
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BLAST of Vfaba.Tiffany.R1.2g140680.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt Swissprot)
Total hits: 5
Match NameE-valueIdentityDescription
sp|G7ID19|RBP2_MEDTR2.726e-2843.93RNA-binding protein 2 OS=Medicago truncatula OX=38... [more]
sp|Q8H0P8|RBP1_MEDTR4.228e-2851.69RNA-binding protein 1 OS=Medicago truncatula OX=38... [more]
sp|A1A6K6|NSRA_ARATH1.036e-2647.19Nuclear speckle RNA-binding protein A OS=Arabidops... [more]
sp|F4HWF9|NSRB_ARATH2.503e-2337.59Nuclear speckle RNA-binding protein B OS=Arabidops... [more]
sp|Q6JB11|MEG5_MAIZE2.486e-1945.00Protein MATERNALLY EXPRESSED GENE 5 OS=Zea mays OX... [more]
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BLAST of Vfaba.Tiffany.R1.2g140680.1 vs. Araport11
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs arabidopsis Araport11)
Total hits: 6
Match NameE-valueIdentityDescription
AT1G76940.26.206e-2847.19| RNA-binding (RRM/RBD/RNP motifs) family protein ... [more]
AT1G76940.11.060e-2747.19| RNA-binding (RRM/RBD/RNP motifs) family protein ... [more]
AT1G21320.51.083e-2537.59| nucleic acid/nucleotide binding protein | Chr1:7... [more]
AT1G21320.22.775e-2537.59| nucleic acid/nucleotide binding protein | Chr1:7... [more]
AT1G21320.37.966e-2537.59| nucleic acid/nucleotide binding protein | Chr1:7... [more]
AT1G21320.12.560e-2437.59| nucleic acid/nucleotide binding protein | Chr1:7... [more]
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InterPro
Analysis Name: InterProScan Analysis for Vicia faba cv. Tiffany genome v1.0 proteins
Date Performed: 2023-05-10
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 135..206
e-value: 3.2E-13
score: 49.3
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 133..219
score: 12.253338
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 127..219
e-value: 4.7E-20
score: 73.5
NoneNo IPR availablePANTHERPTHR10501U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN Bcoord: 43..221
NoneNo IPR availableCDDcd21618RRM_AtNSRA_likecoord: 132..217
e-value: 9.68816E-35
score: 117.365
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 92..206

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vfaba.Tiffany.R1.2g140680.1_tif_v1 ID=Vfaba.Tiffany.R1.2g140680.1_tif_v1; Name=Vfaba.Tiffany.R1.2g140680.1; organism=Vicia faba; type=mRNA; length=690bp
ATGGCGGATCCCTATTACCCATACCCAACTTCCGCCCCTTCCGACGGAGC
AAACTTTGCCAGAAGTAGCTATGCCGGTTACATTCCATCCGAGGCACCAT
CATTGGCGTCTCCTCGTCCTAAATCAACTGAATTTCCGGGTTACGGAACA
GATTACCTGCATAAAGACGTAAGCTTGTTTCGGACGGAGCCATATGGTGT
TGATGATATTAGGGGATCTAGAGTTCACTCCGAACCTAATGTTGTGGGTT
ATTCTCCTCTTGAAGATCCTAAATTAAGTACGAAAAGAGATACTCTGCCG
GGTGTTGATCCAAGCATTCCTGATGCGATTGCGAACAATGAAAGATCAAT
CTCTAAAAGCAGTTATGATGCTCTCCCGGTTTCAGCTGCGGAGTCAAATA
TTTTGTTTGTGGGCAGCCTTCCAAAAGACTGTACTAGAAGGGAAGTAGGC
CATCTTTTCCGTCCCTTTATTGGTTATAAGGATATCAAAGTTGTTCACAA
GGAGCCAAGACGAAGTGGGGACAAGGCTATGATTTTTTGTTTTGTGGAGT
TTACTGAACCCAAATGTGCTCTCACGGCTATGGAAGCTCTGCAAGGCTAC
AAGTTTGATGATAAAAAACCTGATTCGCCAACCTTAAAAATCCAGTTTGC
GCACTTTCCTTTCCGCCCGCCAACTGATGATCGACATTAA
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protein sequence of Vfaba.Tiffany.R1.2g140680.1_tif_v1

>Vfaba.Tiffany.R1.2g140680.1_tif_v1 ID=Vfaba.Tiffany.R1.2g140680.1_tif_v1; Name=Vfaba.Tiffany.R1.2g140680.1_tif_v1; organism=Vicia faba; type=polypeptide; length=229bp
MADPYYPYPTSAPSDGANFARSSYAGYIPSEAPSLASPRPKSTEFPGYGT
DYLHKDVSLFRTEPYGVDDIRGSRVHSEPNVVGYSPLEDPKLSTKRDTLP
GVDPSIPDAIANNERSISKSSYDALPVSAAESNILFVGSLPKDCTRREVG
HLFRPFIGYKDIKVVHKEPRRSGDKAMIFCFVEFTEPKCALTAMEALQGY
KFDDKKPDSPTLKIQFAHFPFRPPTDDRH
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mRNA from alignment at chr2:1110879964..1110883046-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vfaba.Tiffany.R1.2g140680.1_tif_v1 ID=Vfaba.Tiffany.R1.2g140680.1_tif_v1; Name=Vfaba.Tiffany.R1.2g140680.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr2:1110879964..1110883046- (Vicia faba
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding