Vfaba.Tiffany.R1.2g206680.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Vfaba.Tiffany.R1.2g206680.1 vs. UniProtKB/TrEMBL
Match: tr|A0A396HYZ6|A0A396HYZ6_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr4g0003631 PE=4 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 1.177e-39 Identity = 73/113 (64.60%), Postives = 81/113 (71.68%), Query Frame = 0 Query: 1 MGSLSRSQVSFRRSGSSGLVWDDRFLSGELNKLNQQQQQQHKSCVTDEYNNFKEHHAGTTTKRSRSTSAGRGYRTLKVSPTIYPPSPKLSMCGFFSLLTKKGRRSKSGNRRSR 113 M L RS+VSFRRSGSSGLVWDDRFLSGELNKL Q+++ + NN KE TT +RS ST AGRGYRT KVSP I PPSPK+S CGF S KKG+RSK G RRSR Sbjct: 1 MAGLPRSEVSFRRSGSSGLVWDDRFLSGELNKLKQEEED-------NTTNNSKELRVKTTVQRSHSTGAGRGYRTGKVSPAIEPPSPKVSACGFCSPFGKKGQRSKPGKRRSR 106
BLAST of Vfaba.Tiffany.R1.2g206680.1 vs. UniProtKB/TrEMBL
Match: tr|A0A072UGY9|A0A072UGY9_MEDTR (Plant/F18B13-26 protein OS=Medicago truncatula OX=3880 GN=MTR_4g011060 PE=4 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 8.949e-39 Identity = 72/112 (64.29%), Postives = 80/112 (71.43%), Query Frame = 0 Query: 1 MGSLSRSQVSFRRSGSSGLVWDDRFLSGELNKLNQQQQQQHKSCVTDEYNNFKEHHAGTTTKRSRSTSAGRGYRTLKVSPTIYPPSPKLSMCGFFSLLTKKGRRSKSGNRRS 112 M L RS+VSFRRSGSSGLVWDDRFLSGELNKL Q+++ + NN KE TT +RS ST AGRGYRT KVSP I PPSPK+S CGF S KKG+RSK G RRS Sbjct: 1 MAGLPRSEVSFRRSGSSGLVWDDRFLSGELNKLKQEEED-------NTTNNSKELRVKTTVQRSHSTGAGRGYRTGKVSPAIEPPSPKVSACGFCSPFGKKGQRSKPGKRRS 105
BLAST of Vfaba.Tiffany.R1.2g206680.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6LSI7|A0A2Z6LSI7_TRISU (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_261040 PE=4 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 3.226e-32 Identity = 76/113 (67.26%), Postives = 86/113 (76.11%), Query Frame = 0 Query: 1 MGSLSRSQVSFRRSGSSGLVWDDRFLSGELNKLNQQQQQQHKSCVTDEYNNFKEHHAGTTTKRSRSTSAGRGYRTLKVSPTIYPPSPKLSMCGFFSLLTKKGRRSKSGNRRSR 113 M SL RS+VSFRRSGSSGLVWDD+FLSGELNK+NQQQQQ+ K N KE H TT +RSRST +G+GYRT KVSP I PPSPKLS+CGF S KK ++SK G RRSR Sbjct: 1 MASLPRSEVSFRRSGSSGLVWDDKFLSGELNKINQQQQQKKK-------KNSKELHVRTTIQRSRSTGSGQGYRTGKVSPAIEPPSPKLSVCGFCSPFGKKDKQSKPGKRRSR 106
BLAST of Vfaba.Tiffany.R1.2g206680.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2YMD1|A0A1S2YMD1_CICAR (MAPK kinase substrate protein At1g80180-like OS=Cicer arietinum OX=3827 GN=LOC101506342 PE=4 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 1.061e-31 Identity = 71/117 (60.68%), Postives = 79/117 (67.52%), Query Frame = 0 Query: 1 MGSLSRSQVSFRRSGSSGLVWDDRFLSGELNKLNQQQQQQHKSCVTDEYNNFKEHHAGTTTKRSRSTSAGRGYRTLKVSPTIYPPSPKLSMCGFFSLLTK----KGRRSKSGNRRSR 113 M L RS+VSFRRSGSSGLVWDDR+LSGELNKL ++Q Q+ + KE GTT +RSRST AGR YRT KVSP I PPSPKLS CGF S K KG+RSK RSR Sbjct: 1 MAGLPRSEVSFRRSGSSGLVWDDRYLSGELNKLKEEQNQEQQQQNNIN----KEIQQGTTIQRSRSTGAGRNYRTGKVSPAIDPPSPKLSACGFCSAFGKKTGEKGQRSKPSKHRSR 113
BLAST of Vfaba.Tiffany.R1.2g206680.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2P5BQC1|A0A2P5BQC1_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_219840 PE=4 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 2.379e-30 Identity = 62/124 (50.00%), Postives = 76/124 (61.29%), Query Frame = 0 Query: 1 MGSLSRSQVSFRRSGSSGLVWDDRFLSGELNKLNQQQQQQHKSCVTDEYNN----FKEHHAGTTTKRSRSTSAGRGYRTLKVSPTIYPPSPKLSMCGFFSLLTKKGR-------RSKSGNRRSR 113 M L RS SFRR GSSGLVWDDRFLSGELN++NQ+++Q+ D+ N K + T RSRS GRGYRT KVSP I PPSPK+S CGF + K + ++ +G RRSR Sbjct: 1 MAGLQRSATSFRRQGSSGLVWDDRFLSGELNQVNQKEEQEKPQDQDDQINKPEIMVKAPRSINTVDRSRSNGGGRGYRTGKVSPAIEPPSPKVSACGFCTPFGKPPKNKTSQRTKAITGKRRSR 124
BLAST of Vfaba.Tiffany.R1.2g206680.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2P5EV16|A0A2P5EV16_TREOI (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_147310 PE=4 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.098e-29 Identity = 62/124 (50.00%), Postives = 75/124 (60.48%), Query Frame = 0 Query: 1 MGSLSRSQVSFRRSGSSGLVWDDRFLSGELNKLNQQQQQQHKSCVTDEYNN----FKEHHAGTTTKRSRSTSAGRGYRTLKVSPTIYPPSPKLSMCGFFSLLTKKGR-------RSKSGNRRSR 113 M L RS SFRR GSSGLVWDDRFLSGELN++NQ+++Q+ D+ N K + T RSRS GRGYRT KVSP I PPSPK+ CGF S K + ++ +G RRSR Sbjct: 1 MAGLQRSATSFRRQGSSGLVWDDRFLSGELNQVNQKEEQEKPQDQYDQINKPEVMVKVPRSINTVDRSRSNGGGRGYRTGKVSPAIEPPSPKVPACGFCSPFGKPPKNKTSQRTKTTTGKRRSR 124
BLAST of Vfaba.Tiffany.R1.2g206680.1 vs. UniProtKB/TrEMBL
Match: tr|A0A4U5QW41|A0A4U5QW41_POPAL (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000034190 PE=4 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 7.131e-29 Identity = 61/126 (48.41%), Postives = 75/126 (59.52%), Query Frame = 0 Query: 1 MGSLSRSQVSFRRSGSSGLVWDDRFLSGELNKLNQQQQQQHKSCVTDEYNNFKEHH-----------AGTTTKRSRSTSAGRGYRTLKVSPTIYPPSPKLSMCGFFSLLTK--KGRRSKSGNRRSR 113 M L RS VSFRR GSSGLVWDD+ +SGELNK+NQ+Q+ + + D+ + K + T +RSRS RGYRT +VSP I PPSPK+S CGF K K RR K+G RSR Sbjct: 1 MAGLQRSAVSFRRQGSSGLVWDDKLISGELNKVNQKQEHEEQEPQHDQKTDIKLQNDVRPTSRSSTTPSITIERSRSNGGQRGYRTGRVSPAIEPPSPKVSACGFCGAFGKPAKNRRKKAGMGRSR 126
BLAST of Vfaba.Tiffany.R1.2g206680.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K2B2D7|A0A2K2B2D7_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_003G062200 PE=4 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 7.131e-29 Identity = 61/126 (48.41%), Postives = 75/126 (59.52%), Query Frame = 0 Query: 1 MGSLSRSQVSFRRSGSSGLVWDDRFLSGELNKLNQQQQQQHKSCVTDEYNNFKEHH-----------AGTTTKRSRSTSAGRGYRTLKVSPTIYPPSPKLSMCGFFSLLTK--KGRRSKSGNRRSR 113 M L RS +SFRR GSSGLVWDD+ +SGELNK+NQ+Q+ + + D+ + K + T +RSRS RGYRT +VSP I PPSPK+S CGF K K RR KSG RSR Sbjct: 1 MAGLQRSAMSFRRQGSSGLVWDDKLISGELNKVNQKQEHEEQEPQHDQKTDIKLENDVRPTSRSSTTPSITIERSRSNGGQRGYRTGRVSPAIEPPSPKVSACGFCGAFGKPAKNRRKKSGKGRSR 126
BLAST of Vfaba.Tiffany.R1.2g206680.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6J1BGQ3|A0A6J1BGQ3_9ROSI (MAPK kinase substrate protein At1g80180-like OS=Herrania umbratica OX=108875 GN=LOC110427427 PE=4 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 9.069e-29 Identity = 65/134 (48.51%), Postives = 75/134 (55.97%), Query Frame = 0 Query: 1 MGSLSRSQVSFRRSGSSGLVWDDRFLSGELNKLNQQQQQ-------------------QHKSCVTDEYNNFKEHHAGTTTKRSRSTSAGRGYRTLKVSPTIYPPSPKLSMCGFFSLLTKKGR--RSKSGNRRSR 113 M L RS VSFRR GSSGLVWDDRFLSGELN++ Q+QQ+ Q K V + + T +RSRS RGYRT KVSP I PPSPK+S CGF S K+ + R K G RRSR Sbjct: 1 MAGLQRSAVSFRRQGSSGLVWDDRFLSGELNQVKQEQQEGETKQQLQQEEQGQLRDNNQEKVDVIKDVKPTRNIGPINTIERSRSNGERRGYRTGKVSPAIEPPSPKVSACGFCSAFGKQAKNHRKKPGKRRSR 134
BLAST of Vfaba.Tiffany.R1.2g206680.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6A4NB96|A0A6A4NB96_LUPAL (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr25g0279471 PE=4 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.204e-28 Identity = 66/120 (55.00%), Postives = 76/120 (63.33%), Query Frame = 0 Query: 1 MGSLSRSQVSFRRSGSSGLVWDDRFLSGELNKLNQQ-QQQQHKSC-VTDEYNNFKEHHAGTTTKRSRSTSAG-RGYRTLKVSPTIYPPSPKLSMCGFFSLLTKKG----RRSKSGNRRSR 113 M L RS VSFRR GSSG VWDD+FL+ E NK+NQQ ++QQHK +T + TT RSRST G RGYR KVSP I PPSPKLS CGF S K G +RS+ G RR+R Sbjct: 1 MAGLQRSAVSFRRQGSSGFVWDDKFLTEEFNKVNQQNEEQQHKQGEITTSLGSVN-----TTMDRSRSTGGGSRGYRIGKVSPAIDPPSPKLSACGFCSAFGKHGDKGSQRSRPGKRRTR 115
BLAST of Vfaba.Tiffany.R1.2g206680.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9SSC1|Y1801_ARATH (MAPK kinase substrate protein At1g80180 OS=Arabidopsis thaliana OX=3702 GN=At1g80180 PE=1 SV=1) HSP 1 Score: 65.0846 bits (157), Expect = 1.600e-13 Identity = 51/142 (35.92%), Postives = 67/142 (47.18%), Query Frame = 0 Query: 1 MGSLSRSQVSFRRSGSSGLVWDDRFLSGELNKLNQQ----------QQQQHKSCVTDEYNN----------FKEHHAGTTTKRSRSTSAG--RGYR-TLKVSPTIYPPSPKLSMCGFFSLLTKK------GRRSKSGNRRSR 113 M L RS +SFRR GSSG+VWDDR ++ +L+QQ QQ + +T E + K +RSRS G R +R T +VSP + PPSP+LS G S KK +R + RRSR Sbjct: 1 MAGLQRSTISFRRQGSSGIVWDDRLIA----ELSQQAANDRKGETLQQDEQAKLITSEVQDQTTKPIAGEGLKPIRTDGGMERSRSNGGGAIRHHRNTGRVSPAVDPPSPRLSAFGCCSAFGKKQPGKKVNQRKRPAKRRSR 138
BLAST of Vfaba.Tiffany.R1.2g206680.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9XI29|Y1540_ARATH (Uncharacterized protein At1g15400 OS=Arabidopsis thaliana OX=3702 GN=At1g15400 PE=1 SV=2) HSP 1 Score: 62.3882 bits (150), Expect = 2.802e-12 Identity = 46/122 (37.70%), Postives = 61/122 (50.00%), Query Frame = 0 Query: 1 MGSLSRSQVSFRRSGSSGLVWDDRFLSGELNKLNQQQQ-------QQHKSC--------VTDEYNNFKEHHAGTTT----KRSRSTSAG--RGYRTL-KVSPTIYPPSPKLSMCGFFSLLTK 100 M L RS +SFRR GSSG+V+DDR ++ ELNK +Q +Q K DE + + G +RSRS G R +RT +VSP + PPSP++S CG S K Sbjct: 1 MEGLQRSTISFRRQGSSGIVFDDRLIA-ELNKSGNNEQKDESQRDEQPKPMSESSEQVKPIDEKDKLRPIKTGGGAPGGIERSRSNGGGAQRHHRTTGRVSPAVDPPSPRISSCGCCSAFGK 121
BLAST of Vfaba.Tiffany.R1.2g206680.1 vs. Araport11
Match: AT5G20100.1 (| plant/protein | Chr5:6790153-6790494 FORWARD LENGTH=113 | 201606) HSP 1 Score: 69.3218 bits (168), Expect = 2.195e-16 Identity = 47/107 (43.93%), Postives = 63/107 (58.88%), Query Frame = 0 Query: 3 SLSRSQVSFRRSGSSGLVWDDRFLSGELNKLNQQQQQQHKSCVTDEYNNFKE-HHAGTTTKRSRSTS---AGRGYRTLKVSPTIYPPSPKLSM--CGFFSLLTKKGR 103 +L RS SFRR GSSGL+W+DRFLSGE+ N ++Q+ D N+ ++ A TT RS S G G R ++SP + PPSPK+S CGF SL + G+ Sbjct: 2 ALQRSTASFRRQGSSGLIWNDRFLSGEIR--NDERQE-------DRCNDHRDGSMAATTATVKRSASDGGCGHGGRLGELSPALDPPSPKISAVGCGFCSLFSSNGK 99
BLAST of Vfaba.Tiffany.R1.2g206680.1 vs. Araport11
Match: AT1G80180.1 (| hypothetical protein | Chr1:30157057-30157473 REVERSE LENGTH=138 | 201606) HSP 1 Score: 65.0846 bits (157), Expect = 1.637e-14 Identity = 51/142 (35.92%), Postives = 67/142 (47.18%), Query Frame = 0 Query: 1 MGSLSRSQVSFRRSGSSGLVWDDRFLSGELNKLNQQ----------QQQQHKSCVTDEYNN----------FKEHHAGTTTKRSRSTSAG--RGYR-TLKVSPTIYPPSPKLSMCGFFSLLTKK------GRRSKSGNRRSR 113 M L RS +SFRR GSSG+VWDDR ++ +L+QQ QQ + +T E + K +RSRS G R +R T +VSP + PPSP+LS G S KK +R + RRSR Sbjct: 1 MAGLQRSTISFRRQGSSGIVWDDRLIA----ELSQQAANDRKGETLQQDEQAKLITSEVQDQTTKPIAGEGLKPIRTDGGMERSRSNGGGAIRHHRNTGRVSPAVDPPSPRLSAFGCCSAFGKKQPGKKVNQRKRPAKRRSR 138
BLAST of Vfaba.Tiffany.R1.2g206680.1 vs. Araport11
Match: AT1G15400.1 (| hypothetical protein | Chr1:5296033-5296824 REVERSE LENGTH=145 | 201606) HSP 1 Score: 62.3882 bits (150), Expect = 2.275e-13 Identity = 46/122 (37.70%), Postives = 61/122 (50.00%), Query Frame = 0 Query: 1 MGSLSRSQVSFRRSGSSGLVWDDRFLSGELNKLNQQQQ-------QQHKSC--------VTDEYNNFKEHHAGTTT----KRSRSTSAG--RGYRTL-KVSPTIYPPSPKLSMCGFFSLLTK 100 M L RS +SFRR GSSG+V+DDR ++ ELNK +Q +Q K DE + + G +RSRS G R +RT +VSP + PPSP++S CG S K Sbjct: 1 MEGLQRSTISFRRQGSSGIVFDDRLIA-ELNKSGNNEQKDESQRDEQPKPMSESSEQVKPIDEKDKLRPIKTGGGAPGGIERSRSNGGGAQRHHRTTGRVSPAVDPPSPRISSCGCCSAFGK 121
BLAST of Vfaba.Tiffany.R1.2g206680.1 vs. Araport11
Match: AT1G15400.2 (| hypothetical protein | Chr1:5296402-5296824 REVERSE LENGTH=140 | 201606) HSP 1 Score: 62.3882 bits (150), Expect = 2.285e-13 Identity = 46/122 (37.70%), Postives = 61/122 (50.00%), Query Frame = 0 Query: 1 MGSLSRSQVSFRRSGSSGLVWDDRFLSGELNKLNQQQQ-------QQHKSC--------VTDEYNNFKEHHAGTTT----KRSRSTSAG--RGYRTL-KVSPTIYPPSPKLSMCGFFSLLTK 100 M L RS +SFRR GSSG+V+DDR ++ ELNK +Q +Q K DE + + G +RSRS G R +RT +VSP + PPSP++S CG S K Sbjct: 1 MEGLQRSTISFRRQGSSGIVFDDRLIA-ELNKSGNNEQKDESQRDEQPKPMSESSEQVKPIDEKDKLRPIKTGGGAPGGIERSRSNGGGAQRHHRTTGRVSPAVDPPSPRISSCGCCSAFGK 121
BLAST of Vfaba.Tiffany.R1.2g206680.1 vs. Araport11
Match: AT1G15400.3 (| hypothetical protein | Chr1:5296019-5296824 REVERSE LENGTH=148 | 201606) HSP 1 Score: 62.3882 bits (150), Expect = 2.867e-13 Identity = 46/122 (37.70%), Postives = 61/122 (50.00%), Query Frame = 0 Query: 1 MGSLSRSQVSFRRSGSSGLVWDDRFLSGELNKLNQQQQ-------QQHKSC--------VTDEYNNFKEHHAGTTT----KRSRSTSAG--RGYRTL-KVSPTIYPPSPKLSMCGFFSLLTK 100 M L RS +SFRR GSSG+V+DDR ++ ELNK +Q +Q K DE + + G +RSRS G R +RT +VSP + PPSP++S CG S K Sbjct: 1 MEGLQRSTISFRRQGSSGIVFDDRLIA-ELNKSGNNEQKDESQRDEQPKPMSESSEQVKPIDEKDKLRPIKTGGGAPGGIERSRSNGGGAQRHHRTTGRVSPAVDPPSPRISSCGCCSAFGK 121 The following BLAST results are available for this feature:
BLAST of Vfaba.Tiffany.R1.2g206680.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of Vfaba.Tiffany.R1.2g206680.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt Swissprot) Total hits: 2 Position : 0 Zoom : x 1
BLAST of Vfaba.Tiffany.R1.2g206680.1 vs. Araport11
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs arabidopsis Araport11) Total hits: 5 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Vicia faba cv. Tiffany genome v1.0 proteins
Date Performed: 2023-05-10 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vfaba.Tiffany.R1.2g206680.1_tif_v1 ID=Vfaba.Tiffany.R1.2g206680.1_tif_v1; Name=Vfaba.Tiffany.R1.2g206680.1; organism=Vicia faba; type=mRNA; length=342bpback to top protein sequence of Vfaba.Tiffany.R1.2g206680.1_tif_v1 >Vfaba.Tiffany.R1.2g206680.1_tif_v1 ID=Vfaba.Tiffany.R1.2g206680.1_tif_v1; Name=Vfaba.Tiffany.R1.2g206680.1_tif_v1; organism=Vicia faba; type=polypeptide; length=113bpback to top mRNA from alignment at chr2:1645978855..1645979196+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>Vfaba.Tiffany.R1.2g206680.1_tif_v1 ID=Vfaba.Tiffany.R1.2g206680.1_tif_v1; Name=Vfaba.Tiffany.R1.2g206680.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr2:1645978855..1645979196+ (Vicia fababack to top Annotated Terms
The
following terms have been associated with
this mRNA:
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