Vfaba.Tiffany.R1.2g208080.1
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Vfaba.Tiffany.R1.2g208080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3U7J3|A0A1S3U7J3_VIGRR (uncharacterized protein LOC106762540 OS=Vigna radiata var. radiata OX=3916 GN=LOC106762540 PE=4 SV=1) HSP 1 Score: 196.823 bits (499), Expect = 9.030e-59 Identity = 85/153 (55.56%), Postives = 119/153 (77.78%), Query Frame = 0 Query: 25 TINPIHPFYIHPRENPSVTIVTPPLDDNNYHNWSKSMRHALTSKNKLSFINESLPKPSTYDPTYDQWEHTNSMVLSWINRTLSPHIAQSKICFDSTFELWEDLRERFTKGNHFRFSNLLRELHSIQQGDRSLSAYFTAMKILWDELEDLRHTP 177
T NP PFY+HPRENP +T++T L++NNY +WS++MR AL SKNK+ FI+ S+ +P D TYD WE N M+LSW+ +TLSPHIA+S I + ELW++L+ERF+KG++F+ SNLL+++HSI+QG+R +S +FT +KILW+ELE LR P
Sbjct: 7 TFNPASPFYLHPRENPGLTLITQVLNENNYSSWSRAMRRALVSKNKVKFIDGSIKRPQKSDDTYDAWERCNVMILSWMTKTLSPHIAESVIYVEEAKELWDELKERFSKGDYFKISNLLQDIHSIKQGERGVSQFFTDLKILWEELESLRPIP 159
BLAST of Vfaba.Tiffany.R1.2g208080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3UK63|A0A1S3UK63_VIGRR (uncharacterized protein LOC106766184 OS=Vigna radiata var. radiata OX=3916 GN=LOC106766184 PE=4 SV=1) HSP 1 Score: 193.741 bits (491), Expect = 1.293e-58 Identity = 86/164 (52.44%), Postives = 121/164 (73.78%), Query Frame = 0 Query: 22 TATTINPIHPFYIHPRENPSVTIVTPPLDDNNYHNWSKSMRHALTSKNKLSFINESLPKPSTYDPTYDQWEHTNSMVLSWINRTLSPHIAQSKICFDSTFELWEDLRERFTKGNHFRFSNLLRELHSIQQGDRSLSAYFTAMKILWDELEDLRHTPSLFLQHTL 185
T T NP PFY+HP ENP +T++T L++NNY +WS+SMR AL SKNK+ FI+ ++ +P D YD WE N M+LSWI +TLSPHIA+S I + +LWE+L+ERF+KG++F+ S+LL+++HSI+QG+R +S +FT +KILW+ELE LR PS + T
Sbjct: 4 TDQTSNPNSPFYLHPGENPGLTLITQILNENNYASWSRSMRRALLSKNKVKFIDGTIKRPKKTDTMYDAWERCNMMILSWITKTLSPHIAESVIYIEEAKDLWEELKERFSKGDYFKISDLLQDIHSIKQGERGVSQFFTDLKILWEELESLRPVPSCTCEITC 167
BLAST of Vfaba.Tiffany.R1.2g208080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A151SJI1|A0A151SJI1_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_001116 PE=4 SV=1) HSP 1 Score: 190.274 bits (482), Expect = 1.396e-58 Identity = 82/156 (52.56%), Postives = 117/156 (75.00%), Query Frame = 0 Query: 27 NPIHPFYIHPRENPSVTIVTPPLDDNNYHNWSKSMRHALTSKNKLSFINESLPKPSTYDPTYDQWEHTNSMVLSWINRTLSPHIAQSKICFDSTFELWEDLRERFTKGNHFRFSNLLRELHSIQQGDRSLSAYFTAMKILWDELEDLRHTPSLFLQ 182
NP+ P+Y+HPRENP +V+ L+ NYH+WS+ ++ AL SKNK +F++ S+P P+ D YD WE N MV+SWI R++S IAQS I D+ ELW+DL++RF+KG++FR +LL+E+HSI+QGDR++S++FT +KILW+ELE LR PS Q
Sbjct: 1 NPLSPYYLHPRENPGAVLVSTQLEGGNYHSWSRFIKRALQSKNKFTFVDGSIPMPTPEDELYDAWERCNVMVISWITRSVSAQIAQSTIYIDNAQELWQDLKDRFSKGDYFRTFDLLQEIHSIRQGDRNISSFFTDLKILWEELESLRPIPSCLCQ 156
BLAST of Vfaba.Tiffany.R1.2g208080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A151RQ00|A0A151RQ00_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_033837 PE=4 SV=1) HSP 1 Score: 194.512 bits (493), Expect = 3.363e-58 Identity = 84/156 (53.85%), Postives = 117/156 (75.00%), Query Frame = 0 Query: 27 NPIHPFYIHPRENPSVTIVTPPLDDNNYHNWSKSMRHALTSKNKLSFINESLPKPSTYDPTYDQWEHTNSMVLSWINRTLSPHIAQSKICFDSTFELWEDLRERFTKGNHFRFSNLLRELHSIQQGDRSLSAYFTAMKILWDELEDLRHTPSLFLQ 182
NP+ P+Y+HPREN +V+ L+ NYH+WS+SM+ AL SKNK F++ S+P P+ D YD WE N MV+SWI +++S IAQS I D+ ELW+DL++RF+KG++FR SNLL+E+HSI+QGDR++S++FT +KILW+ELE LR PS Q
Sbjct: 9 NPLSPYYLHPRENSGAVLVSTQLEGGNYHSWSRSMKRALQSKNKFKFVDGSIPMPTPEDELYDAWELCNVMVISWITKSVSAQIAQSTIYIDNAQELWQDLKDRFSKGDYFRTSNLLQEIHSIRQGDRNISSFFTDLKILWEELESLRPIPSYLCQ 164
BLAST of Vfaba.Tiffany.R1.2g208080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3UKV9|A0A1S3UKV9_VIGRR (uncharacterized protein LOC106766445 OS=Vigna radiata var. radiata OX=3916 GN=LOC106766445 PE=4 SV=1) HSP 1 Score: 192.586 bits (488), Expect = 7.000e-58 Identity = 84/161 (52.17%), Postives = 122/161 (75.78%), Query Frame = 0 Query: 19 HIETATTINPIHPFYIHPRENPSVTIVTPPLDDNNYHNWSKSMRHALTSKNKLSFINESLPKPSTYDPTYDQWEHTNSMVLSWINRTLSPHIAQSKICFDSTFELWEDLRERFTKGNHFRFSNLLRELHSIQQGDRSLSAYFTAMKILWDELEDLRHTPSL 179
H++ +T NP PFY+HP ENP +T++T L++NNY +WS++M+ AL SKNK+ FI+ S+ KP D TYD WE N M+LSWI +TLSPHIA+S I + ELW++L+ERF+KG++F+ S+LL+++HSI+QG+R +S +F +KILW+ELE LR P+
Sbjct: 3 HLDQST--NPASPFYLHPGENPGLTLITQTLNENNYSSWSRAMKRALLSKNKIKFIDGSIKKPQKTDATYDTWERCNVMILSWITKTLSPHIAESVIYVEEAKELWDELKERFSKGDYFKISDLLQDIHSIKQGERGVSQFFIDLKILWEELESLRPIPTC 161
BLAST of Vfaba.Tiffany.R1.2g208080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3T9S8|A0A1S3T9S8_VIGRR (uncharacterized protein LOC106753251 OS=Vigna radiata var. radiata OX=3916 GN=LOC106753251 PE=4 SV=1) HSP 1 Score: 189.889 bits (481), Expect = 1.467e-56 Identity = 82/157 (52.23%), Postives = 117/157 (74.52%), Query Frame = 0 Query: 25 TINPIHPFYIHPRENPSVTIVTPPLDDNNYHNWSKSMRHALTSKNKLSFINESLPKPSTYDPTYDQWEHTNSMVLSWINRTLSPHIAQSKICFDSTFELWEDLRERFTKGNHFRFSNLLRELHSIQQGDRSLSAYFTAMKILWDELEDLRHTPSLFL 181
T NP P+Y+HP ENP +T++T L++NNY +WS+S+R AL SKNK+ FI+ S+ +P YD WE N M+LSWI +TLSPHIA+S I + ELW++L+ERF+KG++F+ S+LL+E+HSI+QG+R +S +FT +KILW+ELE LR P+
Sbjct: 7 TSNPASPYYLHPGENPGLTLITQMLNENNYSSWSRSLRRALLSKNKVKFIDGSIKRPQESGAVYDAWERCNVMILSWITKTLSPHIAESVIYIEDAKELWDELKERFSKGDYFKISDLLQEIHSIRQGERGVSQFFTDLKILWEELESLRPIPTCVC 163
BLAST of Vfaba.Tiffany.R1.2g208080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A151TBK0|A0A151TBK0_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_019026 PE=4 SV=1) HSP 1 Score: 189.889 bits (481), Expect = 1.974e-56 Identity = 82/156 (52.56%), Postives = 116/156 (74.36%), Query Frame = 0 Query: 27 NPIHPFYIHPRENPSVTIVTPPLDDNNYHNWSKSMRHALTSKNKLSFINESLPKPSTYDPTYDQWEHTNSMVLSWINRTLSPHIAQSKICFDSTFELWEDLRERFTKGNHFRFSNLLRELHSIQQGDRSLSAYFTAMKILWDELEDLRHTPSLFLQ 182
NP+ P+Y+HPREN +V+ L+ NYH+WS+SM+ AL SKNK F++ S+P P+ D YD WE N MV+SWI +++S IAQS I D+ ELW+DL++RF+KG++FR +LL+E+HSI+QGDR++S++FT +KILW+ELE LR PS Q
Sbjct: 9 NPLSPYYLHPRENSGAVLVSTQLEGGNYHSWSRSMKRALQSKNKFKFVDGSIPMPTPEDELYDAWELCNVMVISWITKSVSAQIAQSTIYIDNAQELWQDLKDRFSKGDYFRTFDLLQEIHSIRQGDRNISSFFTDLKILWEELESLRPIPSYLCQ 164
BLAST of Vfaba.Tiffany.R1.2g208080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3TT29|A0A1S3TT29_VIGRR (uncharacterized protein LOC106758503 OS=Vigna radiata var. radiata OX=3916 GN=LOC106758503 PE=4 SV=1) HSP 1 Score: 189.889 bits (481), Expect = 2.047e-56 Identity = 82/157 (52.23%), Postives = 118/157 (75.16%), Query Frame = 0 Query: 21 ETATTINPIHPFYIHPRENPSVTIVTPPLDDNNYHNWSKSMRHALTSKNKLSFINESLPKPSTYDPTYDQWEHTNSMVLSWINRTLSPHIAQSKICFDSTFELWEDLRERFTKGNHFRFSNLLRELHSIQQGDRSLSAYFTAMKILWDELEDLRHTP 177
++ T NP PFY+HP ENP +T++T L++NNY +WS++MR AL SKNK FI+ S+ +P D TYD WE N M+ SW+ +TLSPHIA+S I + ELW++L+ERF+KG++F+ S+LL+++HSI+QG+R +S +FT +KILW+ELE LR P
Sbjct: 3 QSDQTFNPASPFYLHPGENPGLTLITQVLNENNYSSWSRAMRRALVSKNKAKFIDGSIRRPQKNDDTYDAWERCNVMIXSWMTKTLSPHIAESVIYIEEAKELWDELKERFSKGDYFKISDLLQDIHSIKQGERGVSQFFTDLKILWEELESLRPIP 159
BLAST of Vfaba.Tiffany.R1.2g208080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3T9X1|A0A1S3T9X1_VIGRR (uncharacterized protein LOC106753288 OS=Vigna radiata var. radiata OX=3916 GN=LOC106753288 PE=4 SV=1) HSP 1 Score: 186.422 bits (472), Expect = 1.047e-55 Identity = 82/154 (53.25%), Postives = 116/154 (75.32%), Query Frame = 0 Query: 21 ETATTINPIHPFYIHPRENPSVTIVTPPLDDNNYHNWSKSMRHALTSKNKLSFINESLPKPSTYDPTYDQWEHTNSMVLSWINRTLSPHIAQSKICFDSTFELWEDLRERFTKGNHFRFSNLLRELHSIQQGDRSLSAYFTAMKILWDELEDLR 174
+T NP PFY+HP ENP +T++T L++NNY +WS+SMR AL SKNK+ FI+ S+ +P D YD WE N M+LSWI +TLSPHIA+S I + +LW++L+ERF+KGN+F+ S+LL+++HSI+QG+R +S +FT +KIL +ELE LR
Sbjct: 3 QTDQASNPTSPFYLHPGENPGLTLITQVLNENNYSSWSRSMRRALLSKNKVKFIDGSIKRPQKTDVVYDAWERCNMMILSWITKTLSPHIAESVIYVEEAKKLWDELKERFSKGNYFKISDLLQDIHSIRQGERGVSQFFTDLKILSEELESLR 156
BLAST of Vfaba.Tiffany.R1.2g208080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3V0N0|A0A1S3V0N0_VIGRR (uncharacterized protein LOC106770416 OS=Vigna radiata var. radiata OX=3916 GN=LOC106770416 PE=4 SV=1) HSP 1 Score: 193.741 bits (491), Expect = 2.474e-55 Identity = 88/158 (55.70%), Postives = 119/158 (75.32%), Query Frame = 0 Query: 22 TATTINPIHPFYIHPRENPSVTIVTPPLDDNNYHNWSKSMRHALTSKNKLSFINESLPKPSTYDPTYDQWEHTNSMVLSWINRTLSPHIAQSKICFDSTFELWEDLRERFTKGNHFRFSNLLRELHSIQQGDRSLSAYFTAMKILWDELEDLRHTPSL 179
T T NP P+Y+HP ENP +++++ LD++NY +WS+SMR AL SKNKL FIN + KP D YD WE N MVLSWI +TLS HIA+S + + ELWE+L+ERF+KG+HF+FS+LL+E+HSI+QG+R+++ YFT +KILW+ELE LR PS
Sbjct: 4 TEQTNNPSSPYYLHPGENPGISLISQILDESNYTSWSRSMRRALLSKNKLKFINGEIKKPKREDALYDAWERNNMMVLSWIIKTLSVHIAESVVYVEDAQELWEELKERFSKGDHFKFSDLLQEIHSIKQGERTVNQYFTYLKILWEELEFLRPIPSC 161
BLAST of Vfaba.Tiffany.R1.2g208080.1 vs. Araport11
Match: AT1G21280.1 (| Copia-like polyprotein/retrotransposon | Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606) HSP 1 Score: 91.2781 bits (225), Expect = 1.314e-22 Identity = 48/155 (30.97%), Postives = 79/155 (50.97%), Query Frame = 0 Query: 25 TINPIHPFYIHPR-ENPS-VTIVTPPLDDNNYHNWSKSMRHALTSKNKLSFINESLPKPSTYDPTYDQWEHTNSMVLSWINRTLSPHIAQSKICFDSTFELWEDLRERFTKGNHFRFSNLLRELHSIQQGDRSLSAYFTAMKILWDELEDLRHTP 177
T +P P+Y+ P +PS +I D++NY W R L K FI+ +LPKP + P Y WE N+MV+ W+ +++ + +S + ++ ++WEDLR F + L R L +++QG S+ YF + +W EL + P
Sbjct: 11 TSDPDSPYYLPPDIHHPSDFSIQKLSKDEDNYVAWKIRFRSFLRVTKKFGFIDGTLPKPDPFSPLYQPWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQLRRRLATLRQGGDSVEEYFGKLSKVWMELSEYAPIP 165 The following BLAST results are available for this feature:
BLAST of Vfaba.Tiffany.R1.2g208080.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of Vfaba.Tiffany.R1.2g208080.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of Vfaba.Tiffany.R1.2g208080.1 vs. Araport11
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs arabidopsis Araport11) Total hits: 1 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Vicia faba cv. Tiffany genome v1.0 proteins
Date Performed: 2023-05-10 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vfaba.Tiffany.R1.2g208080.1_tif_v1 ID=Vfaba.Tiffany.R1.2g208080.1_tif_v1; Name=Vfaba.Tiffany.R1.2g208080.1; organism=Vicia faba; type=mRNA; length=564bpback to top protein sequence of Vfaba.Tiffany.R1.2g208080.1_tif_v1 >Vfaba.Tiffany.R1.2g208080.1_tif_v1 ID=Vfaba.Tiffany.R1.2g208080.1_tif_v1; Name=Vfaba.Tiffany.R1.2g208080.1_tif_v1; organism=Vicia faba; type=polypeptide; length=187bpback to top mRNA from alignment at chr2:1656775114..1656775677+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>Vfaba.Tiffany.R1.2g208080.1_tif_v1 ID=Vfaba.Tiffany.R1.2g208080.1_tif_v1; Name=Vfaba.Tiffany.R1.2g208080.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr2:1656775114..1656775677+ (Vicia fababack to top |